The seq2struc alignment: my_fasta_file ---> 2VZ9_B align_len=2114 ene=1504.00 identity=1.040681 hpc_err=7.379375 size_err=0.000000 ins=0 del=1809 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRR 2VZ9_B XXXBBBBBBBBBXXXXXXXXAAAAAAAXXXXXBBXXXXXXXXXXXXXXXX hcchhhhphppchhcpcphcchhhphhpphchhphcccchchphhphhcc 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file MGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASL 2VZ9_B BBXXXXXXXXXXXXXXXXAAAAAXXXAAAAAAAAAAAAAAXXXXXXXXXX hpchcchpchchphhphhpcphpphchphchhhchphchhhcpphphhph 51- 100dddddddddddddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDF 2VZ9_B XXXXXBBBBBBXXXAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAXX cppppphhhphpppchpchhpcchcphhphphhphpchhhhpchphhhch 101- 150dddddddddddddddddddddddddddddddddddddddddddddddddd 151- 200.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file KGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQF 2VZ9_B XXXBBBBXXXXXXAAAAAAAAAAAAAXXXXXBBBBBBBBXXXXAAAAAAA cphphphcphhppphhhhpphhphhcppchphhhhpphphhhchppphph 151- 200dddddddddddddddddddddddddddddddddddddddddddddddddd 201- 250.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file MKLGMLSQDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLARRVYATILNAG 2VZ9_B AXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBBBBXXXXXXXXBBBBBBB hchphhppcpphcphchcppphhchchhhhhhhpccphhcchhhphhphp 201- 250dddddddddddddddddddddddddddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file TNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVG 2VZ9_B BBBXXXXXXXXXXXXAAAAAAAAAAXXXXXXXXXXXXXXBBXXXXXXXXA pppcppccpphphhppchpcphhcphhhhhphchcphchhchhppppchp 251- 300dddddddddddddddddddddddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file DPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEH 2VZ9_B AAAAAAAAAAAAXXXXXXXXXXXXXAAAAXXXXXXAAAAAAAAAAAAAAX chpchpphhphhhhpccchhhhpppcpphphhchhpphhhhhchhhphch 301- 350dddddddddddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file GVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPIRGGNVGINSFGFGGSNV 2VZ9_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBBXXXBBB phhhhphhhhphphchhhhpcpchphhcchhhhcppphphpphphpppph 351- 400dddddddddddddddddddddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file HVILQPNSRPAPPPAQHAALPRLLQASGRTLEAVQTLLEQGLRHSRDLAF 2VZ9_B BBBBBBXXXXXXXXXXXXXXXBBBBBBBXXAAAAAAAAAAAAAXXXXAAA hhhhphppchhhhhhphhhhhchhphppcphchhpphhcpphchpcchhh 401- 450dddddddddddddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file VGMLNEIAAVSPVAMPFRGYAVLGGEAGSQEVQQVPGSKRPVWFICSGMG 2VZ9_B AAAAAAAAXXXXXXXXBBBBBBBXXXXXXXXBBBXXXXXXXBBBBBXXXX hphhpchhhhphhhhhhcphhhhppchpppchpphhppcchhhhhhpphp 451- 500dddddddddddddddddddddddddddddddddddddddddddddddddd 501- 550.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file AQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIV 2VZ9_B XXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXAAAAAAXXXXXXXXXAA hphpphphphhchcchccphhcpcphhchhphchpchhhppcchhhcchh 501- 550dddddddddddddddddddddddddddddddddddddddddddddddddd 551- 600.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SSFVSLTSIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAV 2VZ9_B AAAAAAAAAAAAAAAAAAAXXXXXXBBBBXXXAAAAAAAAXXXXXAAAAA pphhphpphphhhhchhpphphphcphhphphpchhhphhcphhppcchh 551- 600dddddddddddddddddddddddddddddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file LSSYWRGYCIKEANVLPGAMAAVGLSWEECKQRCPPGIVPACHNSKDTVT 2VZ9_B AAAAAAAAAAAAXXXXXXBBBBBXXXAAAAAAAXXXXXBBBBBXXXXXBB hpphhcphhhcchphhhphhhhhphphcchcpchhhphhhhhhppccphp 601- 650dddddddddddddddddddddddddddddddddddddddddddddddddd 651- 700.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file ISGPQAAMSEFLQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRK 2VZ9_B BBBXXAAAAXXXAAAAXXXXXXXBBXXXXXXXXXXXXXXXAAAAAAAAAA hpphphhhpchhpphcccchhhcchcppphhhhphhhcphhhphhcphcc 651- 700dddddddddddddddddddddddddddddddddddddddddddddddddd 701- 750.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file VILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQ 2VZ9_B AXXXXBBXXXXBBXXXXXXXXXXXXXXXBBXAAAAAAAAAXXBBAAAAAA hhhchchcpcchhppphhchphppphhcphphchphpphhphhhhpchhp 701- 750dddddddddddddddddddddddddddddddddddddddddddddddddd 751- 800.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file HVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHRDNLEFFLSNV 2VZ9_B XXXXXXBBBBXXXXXXXAAAAAAXXXXXXBBBXXXXXXXXXAAAAAAAAA hhhhhhhhhchhhhhhhphhhccphcpphphhhhhccchccphchhhpph 751- 800dddddddddddddddddddddddddddddddddddddddddddddddddd 801- 850.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file GRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADF 2VZ9_B AAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX pchhhhphphphpphhhhhchhhhcpphhhphhhchchpphhchhphhch 801- 850dddddddddddddddddddddddddddddddddddddddddddddddddd 851- 900.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file PSGSSCSSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLA 2VZ9_B XXXXXXXXBBBBBBBXXXXXXXXXXXXBBBXXBBBBXAAAAAAAAAAAAA hpppphpphhhhchchphcphchhhhchhhcpchhhhppphhhhphcphh 851- 900dddddddddddddddddddddddddddddddddddddddddddddddddd 901- 950.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RALSQNLEETPVVFEDVTLHQATILPKTGTVSLEVRLLEASHAFEVSDSN 2VZ9_B AAXXXXXXXXXBBBBBBBBXXXBBBXXXXBBBBBBBBBXXXXBBBBBBXX chhppphccphhhhcchphhphphhhcppphphchchhchphhhchpcpp 901- 950dddddddddddddddddddddddddddddddddddddddddddddddddd 951-1000.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file GSLIASGKVYQWESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRG 2VZ9_B XXBBBBBBBBBXXXXXXXXXXXXXXXXXXXXXXXXXBBAAAAAAAAAAAX pphhhppchhphcphchchhcpchhhchhcpphchchpppchhcchchcp 951-1000dddddddddddddddddddddddddddddddddddddddddddddddddd 1001-1050.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file YDYGPFFQLVLESDLEGNRGRLQWNDSWVSFLDAMLHMSILAPGQLGLYL 2VZ9_B BBBXXXXXXBBBBXXXXXBBBBBXXXXAAAAAAAAAAAAAXXXXXXXXBB hchphhhphhhcpchcppcpchphpcphhphhchhhhhphhhhpphphhh 1001-1050dddddddddddddddddddddddddddddddddddddddddddddddddd 1051-1100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file PTRFTSIRIDPVTHRQKLYTLQDTTQAADVVVDRNLNTVVAGGALFLGAH 2VZ9_B BXXXXXXBBXAAAAAAAXBBXXXXXBBBBBBBXXXXXXBBBXXBBXXXXX hpchpphchchhphcpchhphpcppphhchhhccphpphhhpphhhhphh 1051-1100dddddddddddddddddddddddddddddddddddddddddddddddddd 1101-1150.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SSVAPRRPQEHLKPILEKFCFTPHVESGCLAGNTALQEELQLCRGLAQAL 2VZ9_B BBBXXXXXXXXXXXBBBBXXXXXXBBBBBXXXXXXXXAAAAXXXXXXAAA pphhhcchpchhchhhcchhhphhhcpphhhppphhpcchphhcphhphh 1101-1150dddddddddddddddddddddddddddddddddddddddddddddddddd 1151-1200.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file QTKVAQQGLKMVVPGLDGAQAPREAPQQSLPRLLAAACQLQLNGNLQLEL 2VZ9_B AXXXXXXAAAAAAAAAAAXXXXXXXAAAAXXXXXXXXXXXXXXXXXAAAA ppchhppphchhhhphcphphhcchhppphhchhhhhhphphppphphch 1151-1200dddddddddddddddddddddddddddddddddddddddddddddddddd 1201-1250.........:.........:.........:.........:.........: h ph hh hp X BB XX XX -----------M-----TW-------------------LP--------LN my_fasta_file + +| GQVLAQERPLLCDDPLLSGLLDAPALKACVDTALENMASPKMKVVEVLAG 2VZ9_B AAAAAAAXXXXXBBBBBBBXXXXXXXXXXAAAAAAXXXXXBBBBBBBBXX pphhhpcchhhhcchhhpphhchhhhchhhcphhcphhphchchhchhhp 1201-1250ddddddddddd.ddddd..ddddddddddddddddddd.:dddddddd.: 1251-1300.........:.........:.........:.........:.........: hhhhcc chphhhh php phch XXXXXX XXBBBBB XXX BBBB PIPLKD-------RVSMIFL------------QYG-QIDV---------- my_fasta_file +++|+ ++ +| + ++++ DGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWD 2VZ9_B XXXXXXAAAAAAAXXBBBBBXXXXXXXXXXXXXXXBBBBBXXXXXXXXAA cpphhpchhhhhppphhhchchphpccphphhchhphchcphhhpppphc 1251-1300......ddddddd......:dddddddddddd...d...:dddddddddd 1301-1350.........:.........:.........:.........:.........: hcp hhhhhc XXX BBBBBB -----------IDG-AFVLID----------------------------- my_fasta_file |+ + + PANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLL 2VZ9_B AAAAAAXXXXXXXXBBBBBBBXXXXAAAAAXXXXXAAAAXXXXXXXAAAA hhphhhpphpchchhhhphhhhphpchhhhhpphhhphccpphhhhhphh 1301-1350ddddddddddd...d....:.ddddddddddddddddddddddddddddd 1351-1400.........:.........:.........:.........:.........: c pph cphhh hpph hh X XXX BBBBB XXXX BB --------K--------TGI--RTHIP----VGSV-AC------------ my_fasta_file + |+ + +++ + AGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALKRSFYGSV 2VZ9_B AAAAXXXXXBBBBBBBBXXXBBBBBBBXXXXXXXXBBBXXXXXXXXAAAA hphhhpchhphhpphcpppchhhppcphcphhhphphhhhhhccphhpph 1351-1400dddddddd.dddddddd..:dd.....dddd....d..dddddddddddd 1401-1450.........:.........:.........:.........:.........: hhhc hppchp h BBBB XXXXXX A ------------IMLE--PGTRVS-------H------------------ my_fasta_file + + | LFLCRQQTPQDSPVFLSVEDTSFRWVDSLKDILADASSRPVWLMAVGCST 2VZ9_B AAAXXXXXXXXXBBBBXXXXXXXXAAAAAAAAXXXXXXXXXXBBBBBBXX hhhhcppphpcphhhhphccpphchhcphcchhhchppchhhhhhhphpp 1401-1450dddddddddddd....dd.:....ddddddd.dddddddddddddddddd 1451-1500.........:.........:.........:.........:.........: hhhchhhp hpp h AAAAAAAA XXX B -------------AAVRLAAQ----------------------VGT-L-- my_fasta_file ++++ ++ + + + SGVVGMVNCLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGD 2VZ9_B XXXXXXXXXXXXXAAAAAAAAXXXBBBBBXXBBBXXXXBBXXXXXXBBXX pphhphhphhccchpphchchhhhpphpppphhhchhhpppchpchhppc 1451-1500ddddddddddddd......:.dddddddddddddddddddddd...d.dd 1501-1550.........:.........:.........:.........:.........: hhhh pchphchhh ppphp phcpcchh BBBB XXXXXBBBB XXXXX XXAAAAAA ---LVWV---GEAGVRVYA-----------SGQPG-------GARSDKLL my_fasta_file +| + + |+++ +++++ |++++ LVMNVYRDGAWGAFRHFPLEQDRPEKQTEHAFVNVLSRGDLSSIRWVCSP 2VZ9_B XXXBBBBXXXXXXXXBBBBXXAAAAXXXXXXXXXXBBBBBBBXXAAAAAA hhhphhccphhphhchhhhcpcchccppchhhhphhpcpchpphchhhph 1501-1550ddd....ddd.........ddddddddddd.....ddddddd.......: 1551-1600.........:.........:.........:.........:.........: hp AA YQ------------------------------------------------ my_fasta_file + LHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLG 2VZ9_B AAXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXXBBBBBXXXXXXXXXXXX hhhhhhhphpcchhphhhpphphcchhhhppchphcphhpchhpcchhhp 1551-1600..dddddddddddddddddddddddddddddddddddddddddddddddd 1601-1650.........:.........:.........:.........:.........: hchh hc cchc AAAA XX AAAA -------------AKLA-LD-------EDLR------------------- my_fasta_file ++++ MEFSGRDASGRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPI 2VZ9_B XXXXBBBXXXXXXAAAAXXXAAAAAAAAAAAXXXXXXXXBBBBBBBXXXX hchppcchppcchhphhhhcphhpphhhhphhphchhpphphcchhphhh 1601-1650ddddddddddddd....d.:ddddddd..:.ddddddddddddddddddd 1651-1700.........:.........:.........:.........:.........: hchhcchhchch pch hhhccphc ph AAAAAAAAAAAA XXX AAAAAAAA AA LKVVRKMFELRF--------GEP--APARRSVE---------------QL my_fasta_file +++++ ++ ++ ++ +++ + ++ ++ VYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG 2VZ9_B AAAAAAAAAAAAXXBBBBBBXXXAAAAAAAAAAXXXXXXXXBBXXXXXAA hhpphhhphhhcpchphpcphhhhppppphpphhhhhhhpcphchhpphp 1651-1700.........:..dddddddd...dd....:...ddddddddddddddd.: 1701-1750.........:.........:.........:.........:.........: cphcpp chchphhh hhcp AAAAAA AAAAAAAA AAAA RGIEGS---------------RVRATYAL--------------LAKQ--- my_fasta_file ++ + +|+|+ + SAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAE 2VZ9_B AAAAAAXXXXXXBBBBBBXXXAAAAAAAAXXBBBBBBBBBXXXAAAAXXX phccchhhphchhphccphhhppccpphcphhhchphpcphchhhpphhc 1701-1750......ddddddddddddddd........dddddddddddddd....ddd 1751-1800.........:.........:.........:.........:.........: hphphppc chchcchccpc phpphhphhpphhh XXXXXXXX XXXXXXXXXXX AAAAAAAAAAAAAA ---YGVTWNGR----RYDPKDWEKGD-TINQCISAATSCLY--------- my_fasta_file ++++++++ + + + + + + EKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLF 2VZ9_B XXXXXXXXXXXBBBBXXXXXXXXXXXAAAAAAAAAAAAAAAXXXXXXXXB cchphphchhhphpchhchpchchppphhhphhhhhcphphhphhhcphh 1751-1800ddd......:.dddd....:......d..:.........:.ddddddddd 1801-1850.........:.........:.........:.........:.........: phpchhhhhhphhhh hph hh AAAAAAAAAXXXXXX BBB BB -------GVTEAAILAAGYAPA--IGF-------------------VH-- my_fasta_file ++ + +|+++++ ++ +| EEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIG 2VZ9_B BBBBXXXAAAAAAAAAXXXXXXBBBBBXXXXXXXXXXXXXXXXXXXBBXX ccpphphpchpchhchphpcphhphhchphhhcpchchhhchhhppchhp 1801-1850ddddddd..:.........:..dd...ddddddddddddddddddd..dd 1851-1900.........:.........:.........:.........:.........: pp chhp hhhchhchh c XX XXXX AAAAAAAAA X -----TG-----KPLS---FVYDIADII---------------K------ my_fasta_file + + ++++++ KVVIQVREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQL 2VZ9_B XXXXXXXBBBBBXXXXAAAAAAAAAAAAXXXXBBBBBXXXXXXXAAAAAA chhhphccccpphhhcphhhhhhpphpcphhhhhcphhhppphpphphph 1851-1900ddddd..ddddd....ddd:........ddddddddddddddd.dddddd 1901-1950.........:.........:.........:.........:.........: h cphhhchhchhc A AAAAAAAAAAAA -----F--------------DTVVPKAFEIAR------------------ my_fasta_file |+ ++++++++ AQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLD 2VZ9_B AAAAAAXXXBBBBBXXXXXXAAAAAAAAAAAAXXXXBBBBBBXXXXXXXX hphhchcphpchhhppcpphcpphphcphcchccpphphhhpppphpphc 1901-1950ddddd.dddddddddddddd.........:..dddddddddddddddddd 1951-2000.........:.........:.........:.........:.........: cphp chc cchchh hcch XXXX XXX AAAAAA AAAA --RNPG--------EPD--------REVRLA------------CRDI--- my_fasta_file | + ++ | +|+ ++ GARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTA 2VZ9_B XXXXXXAAAAAAAAXXXAAAAAAAAAAAAAAXXXXXBBBBBBBAAAAXXX phcphhpchpphphhpphhphhhhhcchhhcppphchhpchpchchppph 1951-2000dd....dddddddd...dddddddd....:.dddddddddddd....ddd 2001-2050.........:.........:.........:.........:.........: hcppcphhchhhhhcchhh h pchphh AAAAAAAAAAAAAAAAAAA X XXXXXX ---FRSSKTLAKLIPLIEDVLA----------------A-----GEIQPP my_fasta_file ++ + |+ ++++ + +|+ + NLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAMERICEKRRH 2VZ9_B XXXAAAAAAAAAAAAAAAAAAAXXXXXBBBBBXXXXXXXAAAAAXXXXXX phcchpcchhhchchhhhhpphphpcpphpphphphhpphhcchhcccch 2001-2050ddd......:.........:..dddddddddddddddd.ddddd.....: 2051-2100.........:.........:.........:.........:.........: hhhc chp hhhhh hhhp h XXXX XXX XXXXX XXXX X APPE--DAQ------------PVAIP-------LPVS------------L my_fasta_file ++ + + | + +++ ||+ + DGLPGLAVQWGAIGDVGVVLETMGTNDTVIGGTLPQRIASCLEVLDLFLS 2VZ9_B XXXXBBXXXAAAAAAAAAAAAXXXXXBBBBBBBXXXXAAAAAAAAAAAAX cphhphhhphphhpchphhhcphpppcphhppphhpchhphhchhchhhp 2051-2100....dd...dddddddddddd.....ddddddd....dddddddddddd: 2101-2114.........:.... pchp hcpp XXXX XXXX GDAG------HRSS my_fasta_file + + + QPHPVLSSFVLAEK 2VZ9_B XXXXAAAAAAXXXX phhhhhpphhhhcc 2101-2114....dddddd.... The seq2struc alignment: my_fasta_file ---> 2IFY_A align_len=508 ene=-45.00 identity=5.708661 hpc_err=31.102362 size_err=0.000000 ins=0 del=203 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccchphhhhphp phchhcphhhhhccpphc X BBXXXXXXXXXXXXBBBBBXXX BBBBXXXBBBBBBXXXXB --M---TWLPLNPIPLKDRVSMIFLQYG----QIDVIDGAFVLIDKTGIR my_fasta_file + |++++ ++ ++ +++ +++++ ++|+++ + RKPTALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHTTLTACGEAV 2IFY_A XXXBBBBBXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXXBBBBXXXXXXX cchphhhhhcphphcccphpphhhphcchphcphhpchhhpphphhpchh 1- 50dd.ddd...:.........:........dddd.......:.........: 51- 100.........:.........:.........:.........:.........: phhhhpphh hhhhchppchphhhhchhhphpphhhh BBBBXXXXB BBBBBXXXXXXAAAAAAAAAXXXBBBB THIPVGSVA------CIMLEPGTRVSHAAVRLAAQVGTLLVW-------- my_fasta_file ++ +++ +|+ +++++| ++| | +| +++ GLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIK 2IFY_A XXXXXXXXXAAAAAAAAAAXXXXXXAAAAAAAAAAXXXXXXXAAAAAAAA phhcpphpppchphhphphpchhhpphpchphhhccpchccpcphpphhc 51- 100.........dddddd....:.........:.........:..dddddddd 101- 150.........:.........:.........:.........:.........: hpchphchhh ppphpph cpcchhhphchh BXXXXXBBBB XXXXXXX AAAAAAAAAAAA ----VGEAGVRVYA--SGQPGGA--RSDKLLYQAKLA------------- my_fasta_file +| |+ + + | + ++++||++|+++ SVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDG 2IFY_A AAAAAXXXBBBBBBXXXXXXXXXAAAAAAAAAAAAAAXXXXBBBBBBBXX phcccpphhhhhphhpcpphhphhphhhhhhchhhccphcchhhhhhhcp 101- 150dddd.....:....dd...:...dd....:.......ddddddddddddd 151- 200.........:.........:.........:.........:.........: hccchchchhcchhchchpch hhhc cphcphcp XXAAAAAAAAAAAAAAAAXXX AAAA AAAAAAAA ----LDEDLRLKVVRKMFELRFGEP-------APAR------RSVEQLRG my_fasta_file ++ ++ + ++ +|++ + + ++ +++ RDVGPKTAQSYIDATNEVIKETGVGQFATISGRYYSMDRDKRWDRVEKCY 2IFY_A XXXXXXXAAAAAAAAAAAAAAAXXXBBBBBBBAAAAXXXXXXAAAAAAAA cchphcphpphhchppchhccpphpphhphppchhphccccchcchcchh 151- 200dddd.....:.........:.....ddddddd....dddddd.......: 201- 250.........:.........:.........:.........:.........: hcpp chchphhhhh cphphphppcch AAAA AAAAAAAAAA AAXXXXXXXXXX IEGS---------RVRATYALLA---------------KQYGVTWNGRRY my_fasta_file ++++ ++ ++++ | + + + + RAMVNGEGPTYKSAEECVEDSYANGIYDEFVLPSVIVNEDNTPVATINDD 2IFY_A AAAAXXXXXBBXXAAAAAAAAAAXXXXXXXXXXBBBXXXXXXXXXXXXXX chhhppcphphcphcchhccphhpphhcchhhhphhhpccpphhhphpcc 201- 250....ddddddddd......:...ddddddddddddddd.:.........: 251- 300.........:.........:.........:.........:.........: c hcchccpcphpphhph X XXXXXXXXAAAAAAAA D----PKDWEKGDTINQCISA----------------------------- my_fasta_file | +++ ++++++ ++ DAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPEFVCMTHFSETV 2IFY_A XBBBBXXXXXXXXAAAAAAAAXXXXXXXXXXXXXXXXXXBBBXXXXXXXX chhhhhphchcchhphhchhpppchcchccpcchhhhhchhhhphhpcph 251- 300.dddd....:.........:.ddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: hpphhhp hpch hhhhhphh AAAAAAA AAAA AAAAXXXX --------------ATSCLYG-------------VTEA----AILAAGYA my_fasta_file ++ +++++++ DGYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGREAEF 2IFY_A XXBBXXXXXXXXXXAAAAAAAXXXXBBBBBBXXXAAAAXXXXXXXXXXXX cphhhhchhphcpphpchhhphphcphchhcpcchhhhphhhpppcchch 301- 350dddddddddddddd.....:.ddddddddddddd....dddd.......: 351- 400.........:.........:.........:.........:.........: hhhphhhppchhphhhchhchhchcphhhchhchhccphpc hc c XXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXX XX A PAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGE-----PD-R my_fasta_file |++ + + |++ +|| +++ + |+++ + ++ + + PGEERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANC 2IFY_A XXBBBBBBXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXBBBBBXXAA hpccchhhpphchhphchchchphhchpchhhpchcpcchchhhhphhph 351- 400.........:.........:.........:.........:.ddddd..d: 401- 450.........:.........:.........:.........:.........: chch hhcchhcppcphhchhhhhcchhh AAAA AAAAAAAAAAAAAAAAAAAAAAAA EVRL----ACRDIFRSSKTLAKLIPLIEDVLA------------------ my_fasta_file ++ ++ |+++ +|+++|++ |+ || DMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADEEL 2IFY_A AAAAXXXXAAAAAAAAAAAAAAAAAAAAAAAAXXXBBBBBXXXXXXXXXX chhphpphhchphchhchpcchhpchhchhhhccphhhhphchpphccch 401- 450....dddd.:.........:.........:..dddddddddddddddddd 451- 500.........:.........:.........:.........:.........: hp chphhhhhcchphhh hhhhhph XX XXXXXXXXXXXXXXX XXXXXXX ------------AG-----EIQPPAPPEDAQPVA---------IPLPVSL my_fasta_file ++ + + + +||++ ++ + ++ + TSEGEPMTAHTTNPVPFIVTKNDVELREDGILGDIAPTMLTLLGVEQPKE 2IFY_A XXXXXXXXXXXXXXBBBBBXXXXXXXXXXXXXXXAAAAAAAAAXXXXXXX ppcpchhphhppphhhhhhpcpchchcccphhpchhhphhphhphcphcc 451- 500dddddddddddd..ddddd:.........:....ddddddddd......: 501- 508........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + + +++ MTGKTIIK 2IFY_A XXXXXXXX hppcphhc 501- 508........ The seq2struc alignment: my_fasta_file ---> 2V7Y_A align_len=504 ene=-27.00 identity=5.158730 hpc_err=29.166666 size_err=0.000000 ins=0 del=199 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphc hhcphh hhhccpphcph XBBXXXXXXXXXXXXBBBBBXXXBBB BXXXBB BBBBXXXXBBB MTWLPLNPIPLKDRVSMIFLQYGQID-----VIDGAF-VLIDKTGIRTH- my_fasta_file | + +++ ++ + + + +++ ++ + | +| |+|+ MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVG 2V7Y_A XXXBBBBBBXXXBBBBBBBBXXBBBBXXXXXXXXXBBXBBBBXXXXBBBX hpchhphchppppphhhhhcppchchhhphcppcpphphhhhcppcchhp 1- 50.........:.........:......ddddd......d.:.........d 51- 100.........:.........:.........:.........:.........: hhhpphhhh hhchp p chphhhhchhhphp BBXXXXBBB BBBXX X XXXAAAAAAAAAXX ------IPVGSVACI-----------MLEPG---T-RVSHAAVRLAAQVG my_fasta_file + +++ | +++| | +++| ++ ++ EVAKRQAITNPNTIISIKRHMGTDYKVEIEGKQYTPQEISAIILQYLKSY 2V7Y_A AAAAXXXXXXXXBBBXXXXXXXXXXXBBBXXBBBXAAAAAAAAAAAAAAA chhccphhpphpphhphcchhppchchchcpcphphpchphhhhphhcph 51- 100dddddd...:.....ddddddddddd...:.ddd.d...:.........: 101- 150.........:.........:.........:.........:.........: phhhhhpchphchhhppphpphcpcchhhphchh hc cchchc XBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAA XX AAAAAA TLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLA-LD-------EDLRLK my_fasta_file +++ + + ++| ++++ + ++ ++ | + ++ |+++ + AEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAA 2V7Y_A AAAAAXXXXXBBBBBBXXXXXAAAAAAAAAAAAAXXXBBBBBBBAAAAAA hcchhpchhpchhhphhhhhpchpcphpcchpchhphchcchhpchphhh 101- 150.........:.........:.........:....d..ddddddd.....: 151- 200.........:.........:.........:.........:.........: hh cch AA AAA VV---------------------------------------------RKM my_fasta_file + LAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDD 2V7Y_A AAXXXXXXXXBBBBBBBBXXXXBBBBBBBBBXXBBBBBBBBBBXXXXAAA hhhphcccccpphhhhchpppphchphhchpcphhchchphpcphhppcc 151- 200..ddddddddddddddddddddddddddddddddddddddddddddd..: 201- 250.........:.........:.........:.........:.........: hchchpchhhhccphcp hcphcppchchphhhhhcphphph AAAAAXXXAAAAAAAAA AAAAAAAAAAAAAAAAAAAXXXXX FELRFGEPAPARRSVEQ-----LRGIEGSRVRATYALLAKQYGVTW---- my_fasta_file | ++ + + + +|+ + ++ | ++ ++ +| +++ FDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQI 2V7Y_A AAAAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAXXXXXBBBB hcphhhchhhpphcpchphchpccchhhpchcchhcchccchpphpppph 201- 250.........:.......ddddd.......:.........:......dddd 251- 300.........:.........:.........:.........:.........: ppcchchcchccpcphpphhp hhpph hhphpchhhhh hp XXXXXXXXXXXXXXAAAAAAA AAAAA AAAAAAAAAAA XX ------NGRRYDPKDWEKGDTINQCIS-AATSC--LYGVTEAAILA--AG my_fasta_file + ++ ++++ + ++++ | +++ ++| | ++| ++ SLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTP 2V7Y_A BBBBBBBBXXBBBBBBBBBBAAAAAAAXAAAAAXXAAAAAAAAAAAXXXX phhhhphpcpphhhhchphpchchcchphhhhccphphhcphhpchphph 251- 300dddddd...:.........:.......d.:...dd....:......dd.: 301- 350.........:.........:.........:.........:.........: hhhhhphhhppchhp hhhchhchh c hcphhhchhch XXXXBBBBBXXXXXX AAAAAAAAA X AAAAAAAAAAA YAPAIGFVHTGKPLS--FVYDIADII-----------K-FDTVVPKAFEI my_fasta_file + +++ | +++ +++|+ + +++ +++ ADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGV 2V7Y_A XXXXBBBBBXXXXXXAAAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAAAA hchcchhhhppppchhhhpchhccchpcchhcphphcchhhhphhhppph 301- 350.........:.....dd..:......ddddddddddd.d:.........: 351- 400.........:.........:.........:.........:.........: hc cp hpchccc hchhh AA XX XXXXXAA AAAAA AR---------------------RN------PGEPDRE-------VRLAC my_fasta_file + + + ++ + |+ IAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAAD 2V7Y_A AAXXXXXXXXXXXXXXBBBBBBXXXBBBBBBXXXXXXXBBBBBBBXXXXX hhpchcchhhhchphhphphcphpphhpchhccppphhppcpphhpphhc 351- 400..ddddddddddddddddddddd..dddddd.......ddddddd....: 401- 450.........:.........:.........:.........:.........: cch hcppcphh chhhhhcchhh hpc AAA AAAAAAAA AAAAAAAAAAA XXX RDI---------FRSSKTLA---------KLIPLIEDVLA-------AGE my_fasta_file + +|++++++ | | + ++ NQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDAN 2V7Y_A XXXBBBBBBBBBXXXXXXXXBBBBBBBBBXXXXXXXXXXXBBBBBBBXXX pppphchhhhppcchhhhcpcphpchphpphhhhhcphhphchphchchp 401- 450...ddddddddd.......:ddddddddd:.........:ddddddd..: 451- 500.........:.........:.........:.........:.........: hp hhhhh cchphhhh hhhhphpchp XX XXXXX XXXXXXXX XXXXXXXXXX IQ-------PPAPP------EDAQPVAI------------PLPVSLGDAG my_fasta_file ++ ++++ + + ++ + + + + GIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKE 2V7Y_A XXBBBBBBBXXXXXBBBBBBXXXXXXXXAAAAAAAAAAAAXXXXXXXXXX phhhhchcchpppccpphphcpppphpccchpchhcchccphchcccccc 451- 500..ddddddd:....dddddd........dddddddddddd.........: 501- 504.... hcpp XXXX HRSS my_fasta_file + + AAEL 2V7Y_A XXXX hhch 501- 504.... The seq2struc alignment: my_fasta_file ---> 1NUI_A align_len=314 ene=-60.00 identity=5.095541 hpc_err=36.305732 size_err=0.000000 ins=68 del=9 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccchphhhhphpphc hhcphh hhhccpphc X BBXXXXXXXXXXXXBBBBBXXXBBB BXXXBB BBBBXXXXB M-TWLPLNPIPLKDRVSMIFLQYGQID-VIDGAF-------VLIDKTGIR my_fasta_file + +++ + + + |+ ++ + | + ++ | VFLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKWTAGNEDTKERASKRKPS 1NUI_A XBBBBBXXXXXXXXXXBBBBXXXXBBBXXXXXBBXXAAAAAXXXXXXXXX hhhhhhhhcphpppcppphhpcphphhhhhcchphppccpccchpccchp 1- 50.d.......:.........:.......d.:....ddddddd........: 51- 100.........:.........:.........:.........:.........: phhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppph BBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXX THIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQP my_fasta_file ++|+ ++ + +|+ | | + |+ + + +++ + ++| | + + + GGKPGTYNVWNFGESNGRYSALTARGISKETCQKAGYWIAKVDGVMYQVA 1NUI_A XXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAXBBBBBBXXBBBBBBBBBX ppchpphphhphpcpppchphhphcphpccphpchphhhhchcphhhphh 51- 100.........:.........:.........:.........:.........: 101- 150...iiiiiiiiiiii..iiiiiiiiiiiiiiii...iiiiiiiiiiiiii pphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcphc XXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAA GGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIE my_fasta_file ++ + + DYR------------DQ----------------NGN-------------- 1NUI_A XXX XB BBB chc cp ppp 101- 150.........:.........:.........:.........:.........: 151- 200iiiiiiii.:.........:.........:.........:.........: ppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhphp AAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAA GSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVT my_fasta_file ++|++ + +|+ + ++ + +++ +++ + ++ + + + --------IVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGE 1NUI_A BBBXXXXXXBBBBXXXXXXXXXXXXXXXXXXXBBBXXAAAAA hhppchcccccphcpppphcpchhhpchhhpppcchhhpcpc 151- 200.........:.........:.........:.........:.........: 201- 250......i..:..iii....:...iiiiiiiii.......:.........: chhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphp AAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXX EAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPG my_fasta_file ++ + ++ ++ ++++ ++ ++ |+++ | + + IDMLTV-MELQD---CKYPVVSL---------GHGASAAKKTCAANYEYF 1NUI_A AAAAAA XXXXX BBXXXXXX XXAAAAAAAXAAAAXXXX hchhph hchpc hchhhhph phphphhccphhhphchh 201- 250.........:.........:.........:.........:.........: 251- 300...iiiii.:.........:.........:.........:.........: chccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhh XXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXX EPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAI my_fasta_file ++ ++++ + + + + +++++ + +++ | +++ ++ DQF-----EQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLPCKDANEC 1NUI_A XBB BBXXXXAAAAAAAAAAAAAXXXXXBBBXXXXXXXAAAAAXXX cph cphhhhhchcchpcchhcchhphhhhpchchhhhhhcchpch 251- 300.........:.........:.........:.........:.........: 301- 314.........:.... hhhhphpchphcpp XXXXXXXXXXXXXX PLPVSLGDAGHRSS my_fasta_file |++++ ++ ++ HLNGHDREIMEQVW 1NUI_A XAAAAAAAAXAAAA hhpphccchhcphh 301- 314.........:.... The seq2struc alignment: my_fasta_file ---> 3G6J_D align_len=912 ene=318.00 identity=2.850877 hpc_err=15.350877 size_err=0.000000 ins=0 del=607 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h X ------------------------------------------------M- my_fasta_file + DEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITT 3G6J_D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXB ccchhhccphhpcpchhcphhhphcchcchhcpphppchhphhhccphpp 1- 50dddddddddddddddddddddddddddddddddddddddddddddddd.d 51- 100.........:.........:.........:.........:.........: phhh hph hhh ccch phhhhphpphchhcp hhhh BBXX XXX XXX XXXX BBBBBXXXBBBBXXX BBBB -TWLP----LNP----IPL----KDRV-SMIFLQYGQIDVIDG---AFVL my_fasta_file | + + + ++ + + + ++ + +++ + || WEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVL 3G6J_D BBBXXBBBBXXXBBBBXXXBBBBXXXXBBBBBBXXXBBBXXXXBBBBBBB hchhhhphpcccphhhhchhchphhpchhhchchhhphhcpcphchchhh 51- 100d....dddd:..dddd...dddd....d.:.........:...ddd...: 101- 150.........:.........:.........:.........:.........: hc cpph cph hh hpph hhhhhchpp BB XXXX BBB BB XXXX BBBBBBXXX ID--KTGI----RTH-----IP----VGSV-ACIMLEPGT---------- my_fasta_file + + + + +++ ++|+ YNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIV 3G6J_D BBXXXXXXBBBBBBBXXXXXBBXXXXXXXXBBBBBBBXXXBBBBBBBBBB hphcpppchchchchhhphhhhphhppccchppphphhhcpphphhhhhh 101- 150..dd....dddd...ddddd..dddd...:d........:dddddddddd 151- 200.........:.........:.........:.........:.........: chp hhhh chh hphpphhh XXX AAAA AAA AAXXXBBB -RVS-----------HAAV------------RLA--AQVGTLLV------ my_fasta_file ++ +++ + + + PLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPER 3G6J_D BXXXBBBBBBBBBBBXXXXBBBBBBBBBBBBXXXBBXXXXXBBBXXXXXX hhcpphpchchchhhhhhhhpcphccphchhhcphchpcphhhcphchcc 151- 200d...ddddddddddd....dddddddddddd...dd...:....dddddd 201- 250.........:.........:.........:.........:.........: hh pchph chhh BB XXXXX BBBB ---------WV----------GEAGV--RVYA------------------ my_fasta_file + + + + + LGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLK 3G6J_D XXXXXXXXXBBXXXXXXXXXXXXXXXBBBBBBXXXXXXXXXXXXXXXXXX hpccphpccchhhhchpcphhcpcpcpchhhppphhhphpcchhchcchc 201- 250ddddddddd:.dddddddddd.....dd.:..dddddddddddddddddd 251- 300.........:.........:.........:.........:.........: ppphpph cpcchhhp hchh hc cchchchhcc XXXXXXX AAAAAAAA AAAA XX AAAAAAAAAA ----SGQPGGA-----------RSDKLLYQ--AKLA-LD-EDLRLKVVRK my_fasta_file + ++|+ ++++|++ + | ++| | HLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKK 3G6J_D XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAXXAAAAXXXAAAAAAAAAAA hhhhphpphpcpphhphphphhhhhhhccpcphcchphcccpphhchhcc 251- 300dddd.....:.ddddddddddd.......:dd....d..d.........: 301- 350.........:.........:.........:.........:.........: hhchch pch hhhccphcphcph cppch AAAAAA XXX AAAAAAAAAAAAA AAAAA MFELRF---------------GEP-APARRSVEQLRGI-------EGSRV my_fasta_file + + +++ ++++| + + ++ GYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLC 3G6J_D AAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXAAAAA phppphhhcphpphhhhhhcchhpphhphhhhchhphhhphhhhcpphhh 301- 350......ddddddddddddddd...d....:........ddddddd....: 351- 400.........:.........:.........:.........:.........: chphhhhhcp hphphppc AAAAAAAAAA XXXXXXXX RATYALLAKQ-------------------YGVTWNGR------------- my_fasta_file |++ | +| +| GAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISL 3G6J_D AAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA phhchhhhccpchcphhpcchhhhhpchhpphcpppccchhhphhhhhph 351- 400.........:ddddddddddddddddddd:.......ddddddddddddd 401- 450.........:.........:.........:.........:.........: chchcchccpc phpphhphhpp hhhphpchhhhh hp XXXXXXXXXXX AAAAAAAAAAA AAAAAAAAAAAA XX --RYDPKDWEKGD-----TINQCISAATS-----CLYGVTEAAILA--AG my_fasta_file ++| + + + |++ + ++| + + ++ +++ || + QEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGR 3G6J_D AAXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAXXXX pchcchhccphpphhpphpchpchhchphhphpcphphhhhphhhhphpc 401- 450dd.......:...ddddd.:.........ddddd.....:......dd.: 451- 500.........:.........:.........:.........:.........: hhh hhphhhppchhp hhhchhchhchc phh XXX XBBBBBXXXXXX AAAAAAAAAXAA AAA YAP---------AIGFVHTGKPLS------FVYDIADIIKFD-----TVV my_fasta_file ++ |+ ++++ |+ +++ + +++ + LKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPP 3G6J_D XXXAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXXXXXAAA hcphhhpchhpphcccpchcchpcphhphchpphhhhhhhphcchchhhh 451- 500...ddddddddd.......:....dddddd.........:..ddddd..: 501- 550.........:.........:.........:.........:.........: hchhchhc cphpchc cc AAAAAAAA XXXXXXX AA PKAFEIAR--RNPGEPD--------------RE----------------- my_fasta_file ++ +++ + +|++ VVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLP 3G6J_D AAAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXBBBBXBBXX hhchhpcpchhppphpppphphhhhphhhphpcchhchpchphchphphh 501- 550........dd.......dddddddddddddd..ddddddddddddddddd 551- 600.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAK 3G6J_D XXXXXXXBBBBXXXXXXBBBBBBXXXXXBBBXXXXXXXXXBBBXXXXBBX pcppchphchhhcphphhcpccpccpcphphphcpcpppphphhphhhhc 551- 600dddddddddddddddddddddddddddddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file AKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMS 3G6J_D XXXXXXXXXBBBBBBBBBXXXXXXBBBBBBBBBBXXXXXXXXBBBBBBXX hccphphpchchchphchhhcpccchpchcpphhhchhpchcpcpchphp 601- 650dddddddddddddddddddddddddddddddddddddddddddddddddd 651- 700.........:.........:.........:.........:.........: hchhhcchh cppcp AAAAAAAAA AAAAA ------VRLACRDIF-------RSSKT----------------------- my_fasta_file + +|++ + + ILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKV 3G6J_D XXBBBXAAAAAAAAAXXXBBXXAAAAAXXXXXXXBBBBBBXXXXXXXXBB hhchphhpphhhcpcchcphhpphcchhpchchcchhpccpphhhhhcch 651- 700dddddd...:.....ddddddd.....ddddddddddddddddddddddd 701- 750.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGK 3G6J_D BBBBBBBXXXXXXXXXBBBBBBBXXBBBBBBBBBBXXXXXXXXXXBBBBX phpccchhhhchhphhphchhphphhchhhhhphccphpchhhhccccpc 701- 750dddddddddddddddddddddddddddddddddddddddddddddddddd 751- 800.........:.........:.........:.........:.........: hhchhhhhc AAAAAAAAA ------------------LAKLIPLIE----------------------- my_fasta_file +|++++ LNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVK 3G6J_D XBBBBXXXXXXXXXXXXXAAAAAAAAAXXXXXXBBBBBBBBBBXXXXBBB hpchhccchhchhccphhhpcpccchphccchcchhchphchhhcpchhc 751- 800dddddddddddddddddd.:.......ddddddddddddddddddddddd 801- 850.........:.........:.........:.........:.........: chhh hpc AAAA XXX ------------------------------DVLA-------------AGE my_fasta_file + + + VQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKH 3G6J_D BBBBBBBBBBXXXXXXXXXXBBBBBBBXXXAAAAXXXXXXBBBBXXXXXX hphppchcchhhhhcpphcpppcchphpppcphhphhchcchhchcccch 801- 850dddddddddddddddddddddddddddddd....ddddddddddddd..: 851- 900.........:.........:.........:.........:.........: hphhhh hcchph hh hhhhh p XXXXXX XXXXXX XX XXXXX X --IQPPAP---PEDAQP----VA----IPLPV-----------------S my_fasta_file ++ ++ +| ++ + |+ + YLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGA 3G6J_D BBXXXXXXBBBXXXXXXBBBBXXAAAAXXXXXAAAAAAAAAAAAAAAAAX hhhhphppchhpcchphphhhpccphhchhhcccchpcccppcphpchph 851- 900dd......ddd......dddd..dddd..:..ddddddddddddddddd: 901- 912.........:.. hpc hphcpp XXX XXXXXX LGD---AGHRSS my_fasta_file ++++ FTESMVVFGCPN 3G6J_D XXXAAAXXXXXX hpcphhhhphhp 901- 912...ddd...:.. The seq2struc alignment: my_fasta_file ---> 3C6E_A align_len=398 ene=-30.00 identity=3.517588 hpc_err=41.457286 size_err=0.000000 ins=0 del=93 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhph hhhccch phhhhphp phchhc phh XBBX XXXX XXXXXXX BBBBBXXX BBBBXX XBB MTWL----PLNP-----IPLKDRV-SMIFLQYG--QIDVID------GAF my_fasta_file +++ + + + + +++ ++ + YFQGMRCIGMSNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELI 3C6E_A XXXXAAAAXXXXBBBBBXXXXXXXBBBBBBXXXBBBBBBXXBBBBBBBBB hhpphchhphppcchhcphpppphhchhhchpphhpphhcpchphchchh 1- 50....dddd.:..ddddd..:....d....:...dd....:.dddddd..: 51- 100.........:.........:.........:.........:.........: hhhccpp hcphhhhpphhhhhhchppchphhhhchhhphp phh BBBBXXX XBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXX XBB VLIDKTG---IRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVG----TLL my_fasta_file ++++| + + + |+ +++++++ +++ + + + +++ + ++ KTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFVCKHSM 3C6E_A BBBBXXXBBBBBBBBBBBBBBBBBBBXXXXXXXXXXXXXXXXXBBBBBBB cpchcphhphcchhhchchpppppcpchhpppchphpccpccchhhchph 51- 100.......ddd.........:.........:.........:...dddd..: 101- 150.........:.........:.........:.........:.........: hhh pchph chhhppphp phc BBB XXXXX BBBBXXXXX XXA VWV----GEAGV-----------------RVYASGQPG---------GAR my_fasta_file |++ |+++ ++ + ++ ++ VDRGWGNGCGLFGKGGIVTCAMFRCKKNMEGKVVQPENLEYTIVITPHSG 3C6E_A BBBXXXXXXXXXBBBBBBBBBBBBBBBBBBBBBXXXXXBBBBBBBBBXXX hccphppphphhpcpphhphhhhchccphcpchhphcphchphhhphhpp 101- 150...dddd..:..ddddddddddddddddd:........ddddddddd..: 151- 200.........:.........:.........:.........:.........: pcchhhph chhhcc chc hchhcch hchc AAAAAAAA AAAXXA AAA AAAAAAA AAAA SDKLLYQA-----KLALDE-----DLR--------LKVVRKM----FELR my_fasta_file + + + |+ ++ ++ +++ ++ | ++ EEHAVGNDTGKHGKEIKITPQSSITEAELTGYGTVTMECSPRTGLDFNEM 3C6E_A XXXXXXXXBBBBBXXXXXXBBBBBXXXBBBBBBBBXXXXXXXBBBBBXXX cchhhppcppchpcchchphppphpchchpphpphphchphcpphchpch 151- 200........ddddd......ddddd...dddddddd....:..dddd...: 201- 250.........:.........:.........:.........:.........: hpchhhhccphcphcphcppchchphhhhhcphphphppcchchcchccp AXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXX FGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKG my_fasta_file +++ ++ ++ +++ + + ++ + + + ++ + ++ + | ++ VLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAK 3C6E_A XBBBBBXXXXXXXXXXBBBXXXXXXXXXXXXXXXBBBXXXXXXXXXBBBX hhhphcpchhhhhcphhhchhhhhhhphcppppphhpccphhphcphhhc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: cphpphhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhchh XAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAA DTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADII my_fasta_file +++ ++ + +|++ ++++++ +|++++| +++ + ++++ KQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKG 3C6E_A XXXAAAAAAAAXXXXBBXBBXXBBBXXXBBBBBBBXXXXXXXXXXXXXXX cpchhhhpppcphhhphhpphpchphpppphhhpphhchchchcchphcp 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: chcphhhch hchhc cphpchccchchhhc chhcppcph hch XAAAAAAAA AAAAA XXXXXXXAAAAAAAA AAAAAAAAA AAA KFDTVVPKA--FEIAR---RNPGEPDREVRLACR--DIFRSSKTL--AKL my_fasta_file +++ + + ++++ ++ + +|++++++ ++ ++ +++ + MSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRH 3C6E_A XXXXXXXXXBBXXXXXBBBXXXXXXXXXXXXXXXBBXXXXXXXXXBBXXX hphphhppchchhcchhcpphpphhhchphcpcpphhchhhchhchccch 301- 350.........dd.....ddd:.........:....dd...:.....dd..: 351- 398.........:.........:.........:.........:........ hhhhcchhhhpc hph hhhhcchphhhhhhhhphpchphcpp AAAAAAAAAXXX XXX XXXXXXXXXXXXXXXXXXXXXXXXXX IPLIEDVLAAGE----IQP---PAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++++ + ++ ++ +||+ + |+ + ++ + VLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK 3C6E_A XXXXXXXXXXXXBBBBXXXBBBBBBBXXXXXXBBBBBBBXBBBBBBBX hhpchhphphhhpcccphhphchchhhpcphhhhphchpphchphhcc 351- 398.........:..dddd...ddd.......:.........:........ The seq2struc alignment: my_fasta_file ---> 1TYT_A align_len=487 ene=-23.00 identity=4.312115 hpc_err=29.158109 size_err=0.000000 ins=0 del=182 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhh phhhhccchphhhhphpphchhcphhhh X BBXXX XXXXXXXXXBBBBBXXXBBBBXXXBBBB ---M----TWLPL--------NPIPLKDRVSMIFLQYGQIDVIDGAFVL- my_fasta_file + + + | +|+ ++ +++ + ++| + MSRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGG 1TYT_A XXXXBBBBBBXXXAAAAAAAAAAAAAAXXXBBBBBXXXXXXXXXXXXXXA hpchhchhhhphpppphchphphhphhccchhhhchpchhphhhhhhhpp 1- 50ddd.dddd.:...dddddddd........:.........:.........d 51- 100.........:.........:.........:.........:.........: h ccpphcphhhhpphh hhhhc B BXXXXBBBBBXXXXB BBBBB -----I--------------------DKTGIRTHIPVGSVA----CIMLE my_fasta_file + + +| ++++++ + + TCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKN 1TYT_A AAAAAXAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAAA phhphphhhcchhhpphphhcphccphphphchcccphchphchhhhhcp 51- 100ddddd.dddddddddddddddddddd...:.........:.dddd....: 101- 150.........:.........:.........:.........:.........: hppchphhhhchhhp h pphhhhh pchph XXXXXXAAAAAAAAA X XXBBBBB XXXXX PGTRVSHAAVRLAAQ---------V------GTLLVWV---GEAGV---- my_fasta_file +++ +++++ + + + ++ + ++ KAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLET 1TYT_A AAAAAAAAAAAAAAAXXXXBBBBBXBBBBBBXXBBBBBXXXXXXXXBBBB chhpphpcphcphhhcpcphphhpphphhpcphphhhccphchpphhhcp 101- 150.........:.....ddddddddd.dddddd.......ddd.....dddd 151- 200.........:.........:.........:.........:.........: c hhh ppphpphcpcchhhphchhhc cchchc B BBB XXXXXXXAAAAAAAAAAAAXX AAAAAA -------R---VYA----SGQPGGARSDKLLYQAKLALD-----EDLRLK my_fasta_file + + + + + + + + +| ++ LDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYIS 1TYT_A BBBBBBBBXXXBBBXXXXXXXXXXXXXAAAAXXXXXXXXBBBBBXXXAAA hcpchhhhhppphhphhphcpcchhhpppchhhhcchhcchhhhppphhp 151- 200ddddddd.ddd...dddd.:.........:.........ddddd.....: 201- 250.........:.........:.........:.........:.........: hhcchhchchpchhh hccphcphcphcppchchphhhhhcp AAAAAAAAAAXXXAA AAAAAAAAAAAAAAAAAAAAAAAAAA VVRKMFELRFGEPAP------ARRSVEQLRGIEGSRVRATYALLAKQ--- my_fasta_file ++++ +++ ++++ + + + ++ +|+ +++ + + + + IEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVR 1TYT_A AAAAAAAAAAXXXXXBBBBBBXXXXXXXXXXAAAAAAAAAAAAAXXXBBB hchhphhphhchcppphchhhcpchhhcphcpchccphpcphchpphphc 201- 250.........:.....dddddd........:.........:.......ddd 251- 300.........:.........:.........:.........:.........: hph phppc chch c chc cpcphpphhph XXX XXXXX XXXX X XXX XXXAAAAAAAA -YGV------TWNGR-----RYDP----K----DWE---KGDTINQCISA my_fasta_file + | + + | +++++ THENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAG 1TYT_A BXXXBBBBBBXXXXXBBBBBXXXXBBBBXBBBBXXXBBBXXXXXXAAAAX phcphhchpcphcppchhhhcpphchchchhhhhhpchhcppphphcchp 251- 300d...dddddd.....ddddd....dddd.dddd...ddd:.........: 301- 350.........:.........:.........:.........:.........: hpphhhphpchhhhhhphhhhhph hhppchhphhhchhchhchcphhh AAAAAAAAAAAAAAAXXXXXXBBB BBXXXXXXAAAAAAAAAXAAAAAA ATSCLYGVTEAAILAAGYAPAIGF--VHTGKPLSFVYDIADIIKFDTVVP my_fasta_file + ++| + + ++ + ++|+ + | ++ +|+ + +|+ +| VEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVF 1TYT_A XXXXXXXXXXXXXXXXXXXXXBBBXXXXXXXXXXAAAAAAAAAAAAAAAA hchhcpphhchchhpcpphcphhhhpchpcchhhphhhhpcphhhhcphh 301- 350.........:.........:....dd...:.........:.........: 351- 400.........:.........:.........:.........:.........: c hhchhccphp chcc A AAAAAAXXXX XXXA K--------------------------AFEIARRNPG---------EPDR my_fasta_file + +|+|+ |++ ANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLM 1TYT_A AXXXXXXXXXXXXBBBXXXXXBBBBBXXAAAAXXXXXBBBBBBBBBXXXA hpchchpchpchhhhhhphhhhphhphhccchhcchcphhhhcpphphhh 351- 400.dddddddddddddddddddddddddd..:.......ddddddddd...: 401- 450.........:.........:.........:.........:.........: chch hhcchhcppcphhchhhhh AAAA AAAAAAAAAAAAAAAAAAA EVRL---------------------------ACRDIFRSSKTLAKLIPLI my_fasta_file ++++ ++ ++ + |++ ++ + + HNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAK 1TYT_A AAAAXXXXXXBBBBBBBBXXXXXBBBBBBBXXXAAAAAAAAAAAAAAXXX hphpppphcchhhchhpphhcpchhphhhhpcpphchhpphhhhhchphc 401- 450....ddddddddddddddddddddddddddd........:.........: 451- 487.........:.........:.........:....... cchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + + +++ |++ | ++ ++| ++ + + ISDFYNTIGVHPTSAEELCSMRTPAYFYQKGKRVEKI 1TYT_A AAAAAXXXXXXXXXXXXXXXXXXXXBBBBXXBBBXXX hpchhpphphhhpphcchhphcphhhhhpcpcchcch 451- 487.........:.........:.........:....... The seq2struc alignment: my_fasta_file ---> 1Y3Q_A align_len=491 ene=-56.00 identity=3.054990 hpc_err=32.790223 size_err=0.000000 ins=1 del=186 begin1=0 begin2=0 1- 50.i.......:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcp hhhhhccpph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXX BBBBBBXXXX MTWLPLNPIPLKDRVSMIFLQYGQIDVIDG----------AFVLIDKTGI my_fasta_file + + + ++++ + +++ + + +++ + + +| ++ + R-EATWVTEKPLTLKIHMHFRDKWVWDENWPVAREVARLTNVKLVGVANR 1Y3Q_A X XXXXXXXXXBBBBBBBBBXXXBBXXXXXAAAAAAAAAAXBBBBBXXXX c chphhpcchhphchhhhhccchhhccphhhhcchhchpphchhphhpc 1- 50.........:.........:.........:dddddddddd.........: 51- 100.........:.........:.........:.........:.........: cphh hhpphhhhh hchppch BBBB BXXXXBBBB BBXXXXX RTHI-----------PVGSVACIM------------LEPGTRV------- my_fasta_file ++++ +++++ ++ + +++ AATNSQEQFNLMMASGQLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQN 1Y3Q_A XXXXAAAAAAAAAAAXXXXXBBBBXXXAAAAAAAAXXXXXXXXAAAAAAA hhppppcphphhhhppphhchhppcphccchhchphcphhhhhpchhcpp 51- 100....ddddddddddd....:....dddddddddddd...:...ddddddd 101- 150.........:.........:.........:.........:.........: p hh hhchhhp hpphhhhhpchph chhh X AA AAAAAAA XXXBBBBBXXXXX BBBB S-------HA-AVRLAAQ------VGTLLVWVGEAGV--RVYA------- my_fasta_file + ++ ++++|+ ++| ++ + + APNLKAFFKTHPEVQRAITAPDGNIYYLPYVPDGLVSRGYFIRQDWLDKL 1Y3Q_A XAAAAAAAAAXAAAAAAAXXXXXXXXXBBXXXXXXXXBBBBBBAAAAAAX hhphchhhcphhchpchhphhcpphhhhhhhhcphhpcphhhcpchhcch 101- 150.ddddddd.:d.......dddddd.....:.......dd:...ddddddd 151- 200.........:.........:.........:.........:.........: ppphpph cpcchhhphchh hc c XXXXXXX AAAAAAAAAAAA XX A SGQPGGA-RSDKLLYQAKLA------------------LD---E------ my_fasta_file ++ ++ + +++ |+++ HLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWG 1Y3Q_A XXXXXXXAAAAAAAAAAAAAXXXXXXXXXXXBBBXXXXXXAAAAXXXXXX hhcphpphcchhphhchhcccchppppchcchhhhpcchcchhchhphhp 151- 200.......d.:.........:dddddddddddddddddd.:ddd.dddddd 201- 250.........:.........:.........:.........:.........: chchchhcchhchch AAAAAAAAAAAAAAA -------------------------DLRLKVVRKMFELRF---------- my_fasta_file + ++ + + ++ ARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFT 1Y3Q_A XXXXXXXXXXXXBBBXXBBBXXXXXAAAAAAAAAAAAAAAXXXXXXXXXX hcpppppphhchhhcppchchhhhchhhccphchhhphhccphhchchhp 201- 250ddddddddddddddddddddddddd....:.........:dddddddddd 251- 300.........:.........:.........:.........:.........: pchhhhccph cphcp hcppc hch phhhhh XXXAAAAAAA AAAAA AAAAA AAA AAAAAA -GEPAPARRSV----------EQLRG-IEGSR-----VRA----TYALLA my_fasta_file +++++ ++ +++ + ++ +++ + ++ RKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINS 1Y3Q_A XXXXAAAAAAAXXXBBBBBBBAAAAAXAAAAAXXXXXXXXBBBBXXXXXX cchcpccpphppphpphphchhhpphhhpchhpcphhphchhhhhhhhpp 251- 300d........:.dddddddddd.....d..:..ddddd..:dddd.....: 301- 350.........:.........:.........:.........:.........: cphphphppcchchcc hccpcphpphhphhpphhhphpchhhhhhp AAXXXXXXXXXXXXXX XXXXXAAAAAAAAAAAAAAAAAAAAAAAXX KQYGVTWNGRRYDPKD----WEKGDTINQCISAATSCLYGVTEAAILAAG my_fasta_file | + + +| +++| ++ + +| + +++ + ++ ++ KGQRWEEDARQIPRPDGWAITATNKNPVETIKLFDFYFGPKGRELSNFGV 1Y3Q_A XXXXXXXXXXXXXXXXBBBBXXXXXXAAAAAAAAAAXXXAAAAAAAAAXX cppchccchcphhchcphhhphppcphhcphchhchhhphcpcchpphph 301- 350.........:......dddd.........:.........:.........: 351- 400.........:.........:.........:.........:.........: hhhh h phhhp pchh phhhc hhchh XXXX B BBBBX XXXX XAAAA AAAAA YAPA---I--GFVHT-----GKPL--SFVYD------------IADII-- my_fasta_file + + + | +++ + || ++++ PGLTYDIKNGKPVYKDTVLKAAQPVNNQMYDIGAQIPIGFWQDYEYERQW 1Y3Q_A XXXXBBBBXXBBBBXAAAAAXXXXAAAAAAAXXXXXXXXXXXXAAAAAXX hphphchcppchhhccphhchhphhppphhchphphhhphhpchchccph 351- 400....ddd.dd.....ddddd....dd...:.dddddddddddd.....dd 401- 450.........:.........:.........:.........:.........: chcphhhchhchhc cphpchccchchhhcchhcppcphhchhhhh XAAAAAAAAAAAAA XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAA -KFDTVVPKAFEIAR----RNPGEPDREVRLACRDIFRSSKTLAKLIPLI my_fasta_file +++ ++++ +|+ + + | ++++++++++ ++++ + + TNDVALQGIDMYIKNKYVLPQFTGVNLTVEEREIYDKYWPDVKTYMFEMG 1Y3Q_A XXAAAAAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAA ppchhhpphchhhcpchhhhphpphphphcccchhcchhhchcphhhchp 401- 450d........:.....dddd:.........:.........:.........: 451- 491.........:.........:.........:.........:. cchhhhpch phhhhhcchphhhhhhhhphpchphcpp AAAAAXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX EDVLAAGEI----QPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + +++ ++ ++ ++ + + |++| + QSWVMGTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQY 1Y3Q_A AAAAAXXXXAAAAAAAAAAAAAAXXAAAAAAAAAAAAAAAX pphhhppcchccphpchppphcpcphhphhhhhpchhccph 451- 491.........dddd......:.........:.........:. The seq2struc alignment: my_fasta_file ---> 1B89_A align_len=335 ene=-126.00 identity=5.373134 hpc_err=44.477612 size_err=0.000000 ins=0 del=30 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpph X BBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX M-TWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file + ++|+++ ++ + +++ + ++++ + + | +| + ++ +++ RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 1B89_A XAAAAXXXXXXXXXXXAAAAAAAXXXAAAAAAAAAXXXXAAAAAAAAAAA chhchcchhpphpphhhpphpcchhccchhchhchhhpphpphpchhpph 1- 50.d.......:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhhchppchphhh hchhhphpphhhhhpchphchhhppphpphcp BBBBBBXXXXXXAAA AAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAA ACIMLEPGTRVSHAA---VRLAAQVGTLLVWVGEAGVRVYASGQPGGARS my_fasta_file ++++++++ ++ +|+ + |++ |++ | ++ ++ ++ + VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 1B89_A XXAAAAAAAAAAAAAXXXAAAAAAXXXXXXXXAAAAAAAAAAAAAXXXAA hhhpchphhhcphcchpppcphcchhhhhhcpcchchhphhphhhhhhhc 51- 100.........:.....ddd.:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: cchhhphchhhccchchchhcchhchchpch hhhccphcp hcp AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXX AAAAAAAAA AAA DKLLYQAKLALDEDLRLKVVRKMFELRFGEP--APARRSVEQ-----LRG my_fasta_file +++ +++ ++ + ++ ++++ +| + + ++ ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1B89_A AAAAAAAAAXXXXXXXAAAAAAAAAAAAXXXAAAAAAAAAAAXXXXXAAA chcchhphhpccphhcchhphhchhhphcchhhphhpchhhhhpchchpc 101- 150.........:.........:.........:.dd......:..ddddd..: 151- 200.........:.........:.........:.........:.........: hcppch chphhhhhcphph phppcchchcchccpcphpphhphhp AAAAAA AAAAAAAAAAXXX XXXXXXXXXXXXXXXXAAAAAAAAAA IEGSRV----RATYALLAKQYGV-TWNGRRYDPKDWEKGDTINQCISAAT my_fasta_file +++ | + + + + ++ + + +|++ + +++ ++ ++ MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1B89_A AAAAAAXXXXAAAAAAAAAAXXXAAAAAAAAAAXXXXXXXAAAAAAAAAA hcchhchhhpchphhchhchhcphhhhhchhhhhcchcchcphhhphhph 151- 200......dddd.........:...d.....:.........:.........: 201- 250.........:.........:.........:.........:.........: phhhphpchhhhhhphh hhhphhhppchhphhhchhchh chcph AAAAAAAAAAAAAXXXX XXBBBBBXXXXXXAAAAAAAAA XAAAA ----SCLYGVTEAAILAAGYA-PAIGFVHTGKPLSFVYDIADII-KFDTV my_fasta_file ++++ ++ | + ++ + ++ ++ + + ++ PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD 1B89_A XXXXAAAAAAAAAAAAAXXXXAAAAAAAAXXXXXAAAAAAAAAAXXXXXX hpchhccpphcchhpchhphchhhchhphhhchchhhhpchhhhhphchc 201- 250dddd.....:.........:.d.......:.........:....d....: 251- 300.........:.........:.........:.........:.........: hhchhchhccphpchccchchhhcch hcppcphhch hhhhcch AAAAAAAAAXXXXXXXAAAAAAAAAA AAAAAAAAAA AAAAAAA VPKAFEIARRNPGEPDREVRLACRDI---FRSSKTLAKL----IPLIEDV my_fasta_file + | ++ +|++ +|+++ + + + |+ | ++ ++++ HTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 1B89_A XAAAAAAAAXXXXAAAAAAAAAAAAAXXXAAAAAAAAAAXXXXXAAAAAA hpchhphhpchcphhhhchhhcphpphppcphpcphpphhhpccchphhc 251- 300.........:.........:......ddd:.........dddd......: 301- 335.........:.........:.........:..... hhhpchp hhhhhcchphhhhhhhhphpchphcpp AAXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX LAAGEIQ-PPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ + ++ ++++ ++ +| +++ +|+ ++ TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFK 1B89_A AAXXXXXAAAAAAAAAAAXXXXAAAAAAAAAAAAA pphchhcphcphphhpchcchchhchcchhhhhhc 301- 335.......d.:.........:.........:..... The seq2struc alignment: my_fasta_file ---> 3CQF_B align_len=467 ene=-37.00 identity=3.854390 hpc_err=36.402568 size_err=0.000000 ins=0 del=162 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhh hphhhhccchphhhhphpp hchhcphhhh XBBXX XXXXXXXXXXBBBBBXXXB BBBXXXBBBB -----------MTWLP----LNPIPLKDRVSMIFLQYGQ-IDVIDGAFVL my_fasta_file +++ + |+ +++|+ ++ ++ + ++++++ KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREK 3CQF_B XXAAAAAAAAAXXXXXAAAAXXXXXXXXXXXXXBBXXBBXXBBXXBBBBB cphpchppphhphchcpcchhhhppcchcphhhccphppppchhhhcccc 1- 50ddddddddddd.....dddd.........:.........d.........: 51- 100.........:.........:.........:.........:.........: hc cpphcphhhhpphhhhhhchppchphhhh chhhphpphhhh BB XXXXBBBBBXXXXBBBBBBXXXXXXAAAA AAAAAXXXBBBB ID------KTGIRTHIPVGSVACIMLEPGTRVSHAAV-RLAAQVGTLLVW my_fasta_file + ++|+ + + + ++ + ++++ +| | + +|+ + KSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNIS 3CQF_B BBXXXXXXXXXXXXXXXXXXXXXXBBBXXXXXXXXXXBBXXXXXXXBBBB cphppphhchhhhcphhpcphhphhphhpchhhcpphphhhhccchhphp 51- 100..dddddd.:.........:.........:.......d.:.........: 101- 150.........:.........:.........:.........:.........: hpchphchhhppphpphcpcchhhphchhhccchchchhcchhc BXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAA -VGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFE----- my_fasta_file ++++++ ++++ ++ +++ + + ++ | + + + +++ + IDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYT 3CQF_B XXXXXXXXXXBBBBXXXXAAAAAAAAAAAAAAAAAAXXXXXXXXXBBBBB hchhphcccpphphpphphpphhphhcchhpphpcchppphphhhchphp 101- 150d........:.........:.........:.........:.....ddddd 151- 200.........:.........:.........:.........:.........: hchpchhhhccphcphcphcppchchphhhhhcphph AAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX LRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGV------------- my_fasta_file + ++++++++| + ++++ +++++ + + + + ESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYT 3CQF_B BBBXXXAAAAAAAAXXXAAAAAAAAXXXAAAAAXXXXBBBBBBBBBBBBB cphhhpcpphhphhphphchhcpphphchphhhppccchhhhhhcphhhp 151- 200.........:.........:.........:.......ddddddddddddd 201- 250.........:.........:.........:.........:.........: phppcchchcchccpcphpphhp XXXXXXXXXXXXXXXXAAAAAAA --TWNGRRYDPKDWEKGDTINQCIS------------------------- my_fasta_file ++++ ++++ + ++ +++ VSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLE 3CQF_B BBXXXXXXXXXXXXXXXXAAAAAAAXXXXXXXBBBBBBBBBBBBBBBBBB hphchhpphpchhcpphphcchpccphppphhhhhhpphhhpcphhhchc 201- 250dd.......:.........:.....ddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: hhpphhhphp chhhhhhphhhh hphhh ppchh ph AAAAAAAAAA AAAAAAXXXXXX BBBBB XXXXX XA -------AATSCLYGVT----EAAILAAGYAPA-IGFVH-TGKPL---SF my_fasta_file +++ + + |++++ + ++ +++ +| + + TTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGDAKEHNK 3CQF_B BXXXXXXAAAAAAAAAAXXXXXXXXXXXXXXXXBBBBBBXXXXXXBBBXX pppcpcchphhhchhhcppphcpppphcchhccpphphhhhppchcchpc 251- 300ddddddd..:.......dddd........:...d.....d.....ddd.: 301- 350.........:.........:.........:.........:.........: hhchhchhchcphhhchhchh ccphpchccchch hhc AAAAAAAAXAAAAAAAAAAAA AXXXXXXXAAAAA AAA VYDIADIIKFDTVVPKAFEIA--------RRNPGEPDREVRL-----ACR my_fasta_file | +++++++ + ++ |+++ + ++++| +++ + + VVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYI 3CQF_B AAAAAAAAAAXXXXXXXXXXXBBBBBBBBXXXXXXXXXXXXXBBBBBXXX hhpcchpchcphhccphchphcphhhhhphppphhccphphhhhpppchh 301- 350.........:.........:.dddddddd:.........:..ddddd..: 351- 400.........:.........:.........:.........:.........: chhc ppcph hchhh hhcchh hh AAAA AAAAA AAAAA AAAAAA AX DIFR-------SSKTL------------AKLIP-------LIEDVL--AA my_fasta_file ++ + + + + |++ + ++ ETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSG 3CQF_B XXXXBBBBBBBXXXXXBBBBBBBBBBBBXXXXXBBBBBBBXXXXXXBBXX cppppchpphchphchhphhhhphchphcchphcpppcchhphcphcppp 351- 400....ddddddd.....dddddddddddd.:...ddddddd......dd.: 401- 450.........:.........:.........:.........:.........: p chp hhh hhcchph hhhhhhh X XXX XXX XXXXXXX XXXXXXX G-------EIQ--PPA------PPEDAQP-------VAIPLPV------- my_fasta_file + ||+ + + |++++ KDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEI 3CQF_B XBBBBBBBXXXBBXXXBBBBBBXXXXXXXBBBBBBBXXXXXXXBBBBBBB cccphhhpphhhhhhppcphchhhcchpphhhchhcphhpcpphhhppch 401- 450.ddddddd.:.dd...dddddd.......ddddddd...:...ddddddd 451- 467.........:....... phpc hphcpp XXXX XXXXXX -SLGD------AGHRSS my_fasta_file +++ ++++|+ KVSIGGTTLYPTATISH 3CQF_B BXXXXBBBBBBXXXXXX chphpppphhhphphph 451- 467d....dddddd...... The seq2struc alignment: my_fasta_file ---> 3FKS_F align_len=471 ene=-88.00 identity=7.218684 hpc_err=30.997878 size_err=0.000000 ins=0 del=166 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhh hphhhhccchphhhh php phch X BBXX XXXXXXXXXXBBBBB XXX BBBB ----M------TWLP------LNPIPLKDRVSMIFL-QYG-----QIDV- my_fasta_file + + + ++ +++++ + + ++| + QSTPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHL 3FKS_F XXXXXBBBBBBBBXXBBBBBBXXXXXXXXXXBBBBBXXXXBBBBBBBBBX ppphhppchphhhphhhchhhcppchhhhhphhchcphppchhhchhphh 1- 50dddd.dddddd....dddddd........:......d..:ddddd....d 51- 100.........:.........:.........:.........:.........: hcphhhhhc cpph c phhh hpphhh XXXBBBBBB XXXX B BBBB XXXXBB IDGAFVLID-------KTGI---R-----THIP---VGSVAC-------- my_fasta_file + + ++|+ + |+ ++ + GENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPID 3FKS_F XXXBBBBBBXXXXXXXXXXXBBBBXXXXXBBBBXXXXXXXBBXXXXXXXX pcpphcphhhcppcphhcpcchhcppphhphhhpccphpchhphhpchhc 51- 100.........ddddddd...:ddd.ddddd:...ddd...:..dddddddd 101- 150.........:.........:.........:.........:.........: hhhc hpp chphhhhchhhp hpp hh BBBB XXX XXXAAAAAAAAA XXX BB --------IMLE-------------PGT--RVSHAAVRLAAQ--VGT-LL my_fasta_file +++ ++ + + | | |+ +| + ERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIG 3FKS_F XXXXXXXXBBBBXXXXXXXXXXXXXXXXBBXXXXAAAAAAXXBBXXXBBB ccphhcpchcchhhhchhphhcpppphchhcpphchhchhhhhhcppchp 101- 150dddddddd.:..ddddddddddddd...dd.........:..dd...d.: 151- 200.........:.........:.........:.........:.........: hhh pchphchhhppphpphcpcchhhphch BBB XXXXXBBBBXXXXXXXAAAAAAAAAAA VWV------------------GEAGVRVYASGQPGGARSDKLLYQAKL-- my_fasta_file + + |+++ |++ +| +|| +++ LFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKET 3FKS_F BBBXXXXXAAAAAAAAAXXXXXXXXXBBBBBBBXXXXAAAAAAAAAAAXX hhpphphpcphhhpchhpphhchhpphphhpphpccpccppchhcchccp 151- 200...dddddddddddddddddd........:.........:........dd 201- 250.........:.........:.........:.........:.........: hhc cchchchhcchhchch p AXX AAAAAAAAAAAAAAAA X ------------------ALD---EDLRLKVVRKMFELRF-----G---- my_fasta_file +++ +++ ++++ | ++ GVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLF 3FKS_F XXXXXXXXXXXBBBBBXXXXXAAAAAAAAAAAAAAAAAAAXXXXXXBBBB phhphcpcpchhhhhpphpchhphchchhhpphphhchhccccppchhhh 201- 250dddddddddddddddddd.:.ddd.....:.........:ddddd.dddd 251- 300.........:.........:.........:.........:.........: chhhhccphcphc phcppchchphhhhhcphphphppcchc XXAAAAAAAAAAA AAAAAAAAAAAAAAAAAXXXXXXXXXXX --EPAPARRSVEQLR------GIEGSRVRATYALLAKQYGVTWNGRRYD- my_fasta_file + ++ ++++ +++++ ++ ++++ +++ + IDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSV 3FKS_F BBXXAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAXXXXXXXXXXXXB hcphhchpphppchphhhpchhphhphphphhpchphhpcchpppccpph 251- 300dd.......:.....dddddd........:.........:.........d 301- 350.........:.........:.........:.........:.........: hcchccpcphpphh phh pphhhphpchhhhhhphhhhhp XXXXXXXXAAAAAA AAA AAAAAAAAAAAAAAXXXXXXBB -------PKDWEKGDTINQCI--SAA--TSCLYGVTEAAILAAGYAPAIG my_fasta_file +++ + |+ ++++ + + |+ ++| | +| |++ ++ TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSK 3FKS_F BBBBBBBXXXXXXXXAAAAAAXXXXXBBXXXXAAAAXXXXXXXXXXXXXX pphphhhhhhcchpchhhhpphhhhchpphhpcphpchphhhhhchhcpc 301- 350ddddddd..:.........:.dd...dd.:.........:.........: 351- 400.........:.........:.........:.........:.........: hhhppchhp hhhchhchhchcphhhc hhchhccphpchc cchchh BBBXXXXXX AAAAAAAAAXAAAAAAA AAAAAAXXXXXXX AAAAAA FVHTGKPLS--FVYDIADIIKFDTVVPK--AFEIARRNPGEPD-REVRLA my_fasta_file ++ + + + + || | + + +++ | +++||++ | +++ SRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTV 3FKS_F XXXXXXXXXAAAAAAAAAAAAAAAAAAAXXAAAAAAXXXXXXXAAAAAAA pchhchhhhppchhchhpchpcphpphcphpchhhhhphcchpcpcchph 351- 400.........dd........:........dd.........:...d.....: 401- 450.........:.........:.........:.........:.........: hcchhcppc phhc hhhhhcchhhhpchphhhhhc AAAAAAAAA AAAA AAAAAAAAAAXXXXXXXXXXX CRDIFRSSK--------TLAK--------LIPLIEDVLAAGEIQPPAPPE my_fasta_file +|++++ + |+++ + +| +|+ ++ || ERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPE 3FKS_F AAAAAAAAAXXXXXXXXAAAAXXXXXXXXAAAAAAAAAAAAAXXXXXXXX cchcchpchhpphhhhhchhpphhpchhchccphhphchhhcpchcphhc 401- 450.........dddddddd..:.dddddddd:.........:.........: 451- 471.........:.........:. chphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXX DAQPVAIPLPVSLGDAGHRSS my_fasta_file +|+ ++ +++ + | ++++ HAFYMVGGIEDVVAKAEKLAA 3FKS_F XXXXXXXXAAAAAAAAAAAAX hhhhhhpphcchhhchcchhh 451- 471.........:.........:. The seq2struc alignment: my_fasta_file ---> 3EWS_A align_len=421 ene=-87.00 identity=5.938242 hpc_err=35.866985 size_err=0.000000 ins=1 del=116 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhhccchphh hhphpphchhcphhhhh XBB XXXXXXXXXXXXBBB BBXXXBBBBXXXBBBBB MTW----------LPLNPIPLKDRVSMI---FLQYGQIDVIDGAFVLI-- my_fasta_file | + ++| ++ | + +++++++ + +|+ MEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQ 3EWS_A XXXAAAAAAAAAAAXXXXXXXXXXXBBBXXXXXXXXXXXXXXXXXXXXAA hccchhpphhpchhcpphhcpppphchhpcchpphhhphcphcchchchp 1- 50...dddddddddd......:........ddd........:........dd 51- 100.........:.........:.........:.........:.........: ccpphcphh hhpphhhhhhchppchphhhhchhhp BXXXXBBBB BXXXXBBBBBBXXXXXXAAAAAAAAA -------DKTGIRTHI--------PVGSVACIMLEPGTRVSHAAVRLAAQ my_fasta_file + + ++ +| + ++ + + ++| + |+ LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 3EWS_A AAAAAAAXXXXXXXXXAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAA hhpphhhhphpchpchpcphhhhhhhchhpphhhpppppppcphhhhhhh 51- 100ddddddd..:......dddddddd.....:.........:.........: 101- 150...i.....:.........:.........:.........:.........: hpphhhhhpchphchhhppphpphcpcchhhphc hhhccch chch XXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAA AAXXAAA AAAA VGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAK-LALDEDL----RLKV my_fasta_file + +++ |+ +|+ + ++ + +|++ ++ + LSQ-VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 3EWS_A AAA XXXXXXXXXBBBBXXXAAAAAAAAAAAAAAXXXXXXXXBBBBXXXX hpp hchhpchhphhhhphphchhhpppchhcphpchhhchchhhhhcpp 101- 150.........:.........:.........:....d....:..dddd...: 151- 200.........:.........:.........:.........:.........: hcchhchchpc hhhhccphc ph cphcppchch AAAAAAAAAXX XAAAAAAAA AA AAAAAAAAAA VRKMFELRFGE----PAPARRSVE----------QL----RGIEGSRVRA my_fasta_file ++ ++ +++ + ++++ + ++ +++ + KLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 3EWS_A XXXXXXXXXXXBBBBXAAAAAAAAXXXXXXXXXXXXBBBBXXAAAAXXXA chccppchpcphhhpphpphhchhpchchhchcchchhhhcchchhhhpp 151- 200.........:.dddd....:....dddddddddd..dddd.........: 201- 250.........:.........:.........:.........:.........: phhhhhcphphphppcchchcchccpcphpphhphhpphh hphpchhhh AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA AAAAAAAAA TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL-YGVTEAAIL my_fasta_file +++++ ++ + +++ ++++ + ++++ +++++ + ++ +++++ GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE 3EWS_A AAAAAAAAAAXXXXXXXBBBBBBXXXXAAAAAAAAAAXXXBBBBBXXXXX phpcpphchpchhhcphphhhhphphccphhchhpchhhchphhchcccc 201- 250.........:.........:.........:.........:d........: 251- 300.........:.........:.........:.........:.........: hhphhhhhphhhppc hhphhhchhchh chcphhhchh AXXXXXXBBBBBXXX XXXAAAAAAAAA XAAAAAAAAA AAGYAPAIGFVHTGK--PLSFVYDIADII-----------KFDTVVPKAF my_fasta_file +++++ +++ | + ++++ ++ ++ + | + +| ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 3EWS_A XXXXXBBBBBBBXXXAAAAAAAAAAAAAAXXXXXBBBBBXXAAAAAAAAA cphcphcphhhhhppcccchphhhphhphhphhphhhhhhpccphphhhh 251- 300.........:.....dd..:.........ddddddddddd.........: 301- 350.........:.........:.........:.........:.........: chhc cp hpchccchchhhcchhc ppc phhchhhhhcc AAAA XX XXXXXAAAAAAAAAAAA AAA AAAAAAAAAAA EIAR---RN---PGEPDREVRLACRDIFR--SSK-----TLAKLIPLIED my_fasta_file | + + +|| ++|+| | + +|| | +++ + | ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 3EWS_A AAAAXXXXXBBBXXXXXAAAAAAAAAAAAXXXXXBBBBBAAAAXXXXXXX chpccphphhhhppchhhcpchhhhcchccpccchhhppphhhcphchcp 301- 350....ddd..ddd.......:.........dd...ddddd:.........: 351- 400.........:.........:.........:.........:.........: hh hhpchphhhhhc chphh hh AA AXXXXXXXXXXX XXXXX XX VL----AAGEIQPPAPPE--------DAQPV-------AI---------- my_fasta_file |+ +++ ++++| + ++ + VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 3EWS_A XXBBBBXXXXXXXXXXXXAAAAAAAAXXXXXBBBBBBBXXAAAAAAAAAA hphhhphchhhcccpphcpcphhhchpcppchpccphhhphhcpchphph 351- 400..dddd...:........dddddddd...:.ddddddd.:dddddddddd 401- 421.........:.........:. hhhhp hpchphcpp XXXXX XXXXXXXXX ---PLPVS--LGDAGHRSS-- my_fasta_file ++ + ++ +++ LNRIQEHFNKKIERLDTDDLD 3EWS_A AAAXXXXXBBXXXXXXXXXAA hpchpchhpcchcchcpcchc 401- 421ddd.....dd.........dd The seq2struc alignment: my_fasta_file ---> 1DT6_A align_len=460 ene=-90.00 identity=4.347826 hpc_err=33.478260 size_err=0.000000 ins=0 del=155 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhcc chphhhh php phchhc XBBXXXXXXXXXX XXBBBBB XXX BBBBXX -------MTWLPLNPIPLKD------------RVSMIFL-QYG-QIDVID my_fasta_file + ++ ++|+ || + + + PPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHG 1DT6_A XXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAXXBBBBBXXXXBBBBBXX hhphphhhhhpphhphchcchpcphpchpchhphhhphhhphchphhhhp 1- 50ddddddd..:.........:dddddddddddd.......d...d.....: 51- 100.........:.........:.........:.........:.........: phhhhhccpphcphhhhpphhhhhhchppchp hhhhchhh XBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXX AAAAAAAA --------GAFVLIDKTGIRTHIPVGSVACIMLEPGTRVS--HAAVRLAA my_fasta_file ++ +++++ + + | + ++++ + + ++ + ++++ YEAVKEALVDLGEEFAGRGSVPILEKVSKGLGIAFSNAKTWKEMRRFSLM 1DT6_A AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAA hchhcchhhchpcchhpcpphhhhcchpcphphhhpphcphcchcchphh 51- 100dddddddd.:.........:.........:.........:dd.......: 101- 150.........:.........:.........:.........:.........: phpphhhhhpc hphchhhppphpphcpcchhhph AXXXBBBBBXX XXXBBBBXXXXXXXAAAAAAAAA QVGTLLVWVGE----------------AGVRVYASGQPGGARSDKLLYQA my_fasta_file + ++ + + + + ++++ +++ + + TLRNFGMGKRSIEDRIQEEARCLVEELRKTNASPCDPTFILGCAPCNVIC 1DT6_A AXXXXXXXXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAA phcphphpccphccchpcchchhhcchccpphphhchphhhphhhhphhh 101- 150.........:.dddddddddddddddd..:.........:.........: 151- 200.........:.........:.........:.........:.........: chh hccchchchhcchhchc hpchhhhccphcphcph AAA XXAAAAAAAAAAAAAAA AXXXAAAAAAAAAAAAA KLA-------LDEDLRLKVVRKMFELR------FGEPAPARRSVEQLRGI my_fasta_file +|| +++ + + + + ++ +++ + +|| SVIFHNRFDYKDEEFLKLMESLHENVELLGTPWLQVYNNFPALLDYFPGI 1DT6_A AAAXXXXXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAAAA phhhhpchchcccchhchhcphhcphchhpphhhphhpphhhhhchhhph 151- 200...ddddddd.........:.......dddddd......:.........: 201- 250.........:.........:.........:.........:.........: cppchchphhhhhcphphphpp cchchcchccpc p AAAAAAAAAAAAAAAXXXXXXX XXXXXXXXXXXX A EGSRVRATYALLAKQYGVTWNG------RRYDPKDWEKGD---------T my_fasta_file + + +++ ++++ +++ + ++++++++ + HKTLLKNADYIKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEQENNLEF 1DT6_A AAAAAAAAAAAAXXXXXXXXXXAAAAAAXXXXXXXXXXXXAAAAAAAAAA hcphhcphchhcphhhcchcchpchhchpphcchhchhhhchcpcpphch 201- 250.........:.........:..dddddd.:.........:ddddddddd: 251- 300.........:.........:.........:.........:.........: hpphhphhpphhhphpchhhhhh phhhhhphhhppchhphhhc AAAAAAAAAAAAAAAAAAAAAAX XXXXXBBBBBXXXXXXAAAA INQCISAATSCLYGVTEAAILAA------GYAPAIGFVHTGKPLSFVYD- my_fasta_file ++ + + |+|+| | ++++++ + + + +++++ + TLESLVIAVSDLFGAGTETTSTTLRYSLLLLLKHPEVAARVQEEIERVIG 1DT6_A AAAAAAAAAAAAAAAAAAAAAAXAAAAAAAAAAAAAAXXXXXXXXAAAAX phcphhhhhpchhphppcppppphchphhhhhchhchhhchpcchcchhp 251- 300.........:.........:...dddddd:.........:.........d 301- 350.........:.........:.........:.........:.........: hhchhchcphhhch hch AAAAAXAAAAAAAA AAA --IADIIKFDTVVPKA-------------------------------FEI my_fasta_file +++ + + |++ |+ RHRSPCMQDRSRMPYTDAVIHEIQRFIDLLPTNLPHAVTRDVRFRNYFIP 1DT6_A XXAAAAAAAAAAAAAAXXXXXXXXBBXXXXXXXXXXXXXXXXBBBBXAAA chcphhhpccpchhhpchhhhchpchhchhhpphhhhhpcchchcphhhh 301- 350dd.......:......ddddddddddddddddddddddddddddddd..: 351- 400.........:.........:.........:.........:.........: hc cphpchccchchhhcchhcppc AA XXXXXXXAAAAAAAAAAAAAAA AR--------------------------RNPGEPDREVRLACRDIFRSSK my_fasta_file + ++ |+ ++ ++ ++ | + | KGTDIITSLTSVLHDEKAFPNPKVFDPGHFLDESGNFKKSDYFMPFSAGK 1DT6_A AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAA cppchhpphpphhhccchhhphchhchphhhccppphccpchhhhhphpc 351- 400..dddddddddddddddddddddddddd.:.........:.........: 401- 450.........:.........:.........:.........:.........: phhchhhhhcch hhhpchphhhhhcchphhhhhhhhph pchp AAAAAAAAAAAA AAXXXXXXXXXXXXXXXXXXXXXXXX XXXX TLAKLIPLIEDV----LAAGEIQPPAPPEDAQPVAIPLPVSL----GDAG my_fasta_file ++++| ++ |+++++ + ++++++++ + + |++ ++ RMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDLDITAVVNGFVSVPPS 1DT6_A AAAAAAAAAAAABBBBXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBXXXX chhhpcphhchchhhhhpphhpphchpphhchcchchphhhpphhphhhp 401- 450.........:..dddd...:.........:.........:..dddd...: 451- 460.........: h cpp X XXX H------RSS my_fasta_file +++ YQLCFIPIHH 1DT6_A XBBBBBBXXX hphhhhhhhh 451- 460.dddddd..: The seq2struc alignment: my_fasta_file ---> 1GQQ_A align_len=459 ene=-73.00 identity=6.535948 hpc_err=34.858388 size_err=0.000000 ins=1 del=154 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphh hhccchphhhh p hpphc X BBXXXXXX XXXXXXBBBBB X XXBBB -M---TWLPLNPI--------PLKDRVSMIFL---Q---------YGQID my_fasta_file + + + + + + +++++++ ++ |+ VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIY 1GQQ_A XXBBBBBXXXXXXAAAAAAAAAAAXXBBBBBBXXXXAAAAAAAAAXXBBB hpphhhhphpphphpphhchhhpcphphpppchhcphhppchhphphchh 1- 50d.ddd....:...dddddddd........:..ddd.ddddddddd....: 51- 100.........:.........:.........:.........:.........: h hcphhhh hccp phcphhh hpp B XXXBBBB BBXX XXBBBBB XXX V--------IDGAFVL----IDKT--------GIRTHIP--------VGS my_fasta_file ++ | +| +++ |+ + IGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRF 1GQQ_A BXXXXXXXXXXXBBBBXXXXXXXXAAAAAAAAXXXXBBBAAAAAAAAAAX hphhcchhcphphhhhpphhcccphchhppcpcchhhhpchphhhchhch 51- 100.dddddddd:......dddd....dddddddd.......dddddddd..: 101- 150.........:.........:.........:.........:.........: hhhhhhchppc hphhhhchhhp hpphhhhh pchph XBBBBBBXXXX XXAAAAAAAAA XXXBBBBB XXXXX VACIMLEPGTR---VSHAAVRLAAQ-------VGTLLVWV-----GEAGV my_fasta_file + +| ++ + + ++ +| | +||++ +++++ RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGAS 1GQQ_A XBBBBBBXXXXAAAAAAAAAAAAAAXXXXXBBXXXBBBBBXXXXXXXXXX chphhhhpphpcpppphhhphhhpphchchphhppphhcphpcphhhphp 101- 150.........:.ddd.....:.....ddddddd.......:ddddd....: 151- 200.........:.........:.........:.........:.........: chhhppphpphcpcchhhphc h hhccchchchhcc BBBBXXXXXXXAAAAAAAAAA A AXXAAAAAAAAAA RVYASGQPGGARSDKLLYQAK-----L-----ALDEDLRLKVVRK----- my_fasta_file | + ++ ++|++ |++ + +++| +++| ++ RYLIAEADESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFL 1GQQ_A BBBBXXXXXAAAAAAAAAAAAXXXXXXBBBBBXXXAAAAAAAAAAXXBBB chhhhchccpchphhhhphhhphhpphchchhcphcpchcchchphhchh 151- 200.........:.........:.ddddd.ddddd.......:.....ddddd 201- 250.........:.........:.........:.........:.........: hhchc hpchhhhccphc AAAAA AXXXAAAAAAAA ---------------------------MFELR------FGEPAPARRSVE my_fasta_file + +++ ++ ++ ++ HNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGF 1GQQ_A BBBXXXXXXBBBBBBBBBXXBBBBBBBXXXXXBBBBBBXXXXAAAAAAAA hphhhhphhhhhhcchhhhchhhchpcphhphphpcphchchcchcppph 201- 250ddddddddddddddddddddddddddd..:..dddddd.:.........: 251- 300.........:.........:.........:.........:.........: phcphcp pchchphhhhhcphphphppcc hc hcc AAAAAAA AAAAAAAAAAAAAXXXXXXXXX XX XXX QLRGIEG-SRVRATYALLAKQYGVTWNGRR--------YD-------PKD my_fasta_file |++++++ + + +++ ||++++ + + + +++ QGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEAL 1GQQ_A AAAAAAAXXXXXAAAAAAAAAXXXXXXXXXBBBBBBBBXXBBBBBBBBXX pphhphhhhppcchphhhphhpchphhphphhhhhhcccphhpchhhchh 251- 300.......d.:.........:.........:dddddddd.:ddddddd..: 301- 350.........:.........:.........:.........:.........: hccpcphpphhphhpp hhhphpchhhhhhphhhhhp XXXXXAAAAAAAAAAA AAAAAAAAAAAAXXXXXXBB WEKGDTINQCISAATS--------------CLYGVTEAAILAAGYAPAIG my_fasta_file + ++ + + + ++ +|+|| ++ ++ ADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDK 1GQQ_A XXAAAAAAAAAAAAAAXXXXBBBBBBBXXXAAAAAAAAAAAAAAAXXXXB hchpphpcchcphpchhchppchchhcchphhhpchphphchhccphpcc 301- 350.........:......dddddddddddddd.........:.........: 351- 400.........i.........:.........:.........:.........: hhhppchhphhhchhchhchcphhhchhchhccph pchccchchhhcc BBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXX XXXXAAAAAAAAA FVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNP--GEPDREVRLACRD my_fasta_file + ++++ + +| ++ + ++|+|+ +++++|+++ ++ + + + RIVMIFQPH-RYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADS 1GQQ_A BBBXXXXXX XXXXXXXXXAAAAAAAAAAAXXXXXBBXXXXXXAAAAAAA chhhhhphh chpcpcchhcchhphhpphchhhhhchhhhpchhhhphcp 351- 400.........:.........:.........:.....dd..:.........: 401- 450.........:.........:.........:.........:.........: hhcpp cphhchhhhhcchhhhpchphhhhhcchphhhhhhhhp AAAAA AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXX IFRSS-------KTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVS my_fasta_file ++++ + + ++++ +++ |+++++ ++||+ ++ ++ | KSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKIS 1GQQ_A AXXXXBBBBBBBXXXAAAAAAAAAAAAAXAAAXXXXBBBBBXXXXAAAAA cphhcphcphpchchhhhpcppphpchhcphhpcpchhhhpphpphpchp 401- 450.....ddddddd.......:.........:.........:.........: 451- 459......... hpchphcpp XXXXXXXXX LGDAGHRSS my_fasta_file +|+| ++ RGLAESWKN 1GQQ_A AAAAAAAAA cphhcphcp 451- 459......... The seq2struc alignment: my_fasta_file ---> 1K62_B align_len=459 ene=-84.00 identity=5.228758 hpc_err=33.115467 size_err=0.000000 ins=0 del=154 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhcc chph hhh php XBBXXXXXXXXXX XXBB BBB XXX MTWLPLNPIPLKD-----RVSM----IFL------------------QYG my_fasta_file + ++ + +| ++++ + | + GKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLL 1K62_B XXXXXXXXXXXXXAAAAAXXXXAAAAXXXAAAAAAAAAAAAAAAAAAXXX pchhppchhphhchhhcchphphhhcchhhchchpppchhpcphcchphh 1- 50.........:...ddddd.:..dddd...dddddddddddddddddd..: 51- 100.........:.........:.........:.........:.........: p hchhcphhhhh ccpphcp B BBBXXXBBBBB BXXXXBB Q--------------------IDVIDGAFVLI-----------DKTGIRT my_fasta_file + ++ +++++ ++ +++ TKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAG 1K62_B XAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAAXXXXXXX pchchcphhhphcchhcchhppphchpppccchhphpccchcchhphphp 51- 100.dddddddddddddddddddd........:..ddddddddddd......: 101- 150.........:.........:.........:.........:.........: hhhhpph hhhhhchppchphhhhchhhp hpp h BBBXXXX BBBBBBXXXXXXAAAAAAAAA XXX B HIPVGSV----------------ACIMLEPGTRVSHAAVRLAAQ-VGT-L my_fasta_file + +| + ++ + ++ +++ | +|++ + + KLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLF 1K62_B XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXBB chhppcpcpcphhpchchhhcpphpphpphhhchhcphhcchchccchhh 101- 150.......dddddddddddddddd......:.........:....d...d: 151- 200.........:.........:.........:.........:.........: hhhhpchphchhh ppphpphcpcchhhphchhhccchc BBBBXXXXXBBBB XXXXXXXAAAAAAAAAAAAXXAAAA LVWVGEAGVRVYA-SGQPGGARSDKLLYQAKLALDEDLR----------- my_fasta_file + ++++ + |++ + +++++++ + | ++ ++ PGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA 1K62_B BBBBXXBBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXX hphphhpchphhchphhhhphhhhhpccpcchhchccchphhhhppphhh 151- 200.........:...d.....:.........:.........ddddddddddd 201- 250.........:.........:.........:.........:.........: hchhcch hchchpchhhhccphcphcphcppchc AAAAAAA AAAAAXXXAAAAAAAAAAAAAAAAAAA -------LKVVRKM---------FELRFGEPAPARRSVEQLRGIEGSRVR my_fasta_file + |++ +++++ |++ + + +++ + + +++| GNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSR 1K62_B XXXXXXXAAAAAAAXXXXXXXXXAAAAAAXXAAAAAAAAAAAAAAAAAAA pphhphccchhchchphphhphpphchppccchhhchhhhcphhhphhpc 201- 250ddddddd..:....ddddddddd......:.........:.........: 251- 300.........:.........:.........:.........:.........: hphhhhhc phphph ppcchc hcchccp c phpphhphhpphhh AAAAAAAA AXXXXX XXXXXX XXXXXXX X AAAAAAAAAAAAAA ATYALLAK-QYGVTW--NGRRYD--PKDWEKG--D-TINQCISAATSCLY my_fasta_file +++| + + + +| + + + + + +|+| + MAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFG 1K62_B AAAAAAAAXXXXXXXBBXXXXXXBBXXXXXXXBBXAAAAAAAAAAAAAAA hhcchhhhhpcchphhphpchhppppphhhcccphcphchhcpchpchhp 251- 300........d:.....dd..:...dd....:..dd.d...:.........: 301- 350.........:.........:.........:.........:.........: phpchhhhhhphhhhhphhhpp chhphhhchhchhchcphhhc AAAAAAAAAXXXXXXBBBBBXX XXXXAAAAAAAAAXAAAAAAA GVTEAAILAAGYAPAIGFVHTG----KPLSFVYDIADIIKFDTVVPK--- my_fasta_file + + +| ++ ++ + +++++++|+ ++ | + RCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQI 1K62_B AAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAXBB chhphhhphcphhpphpcchpcccchhhchpcphphhhphhpphhpphph 301- 350.........:.........:..dddd...:.........:.......ddd 351- 400.........:.........:.........:.........:.........: hhchhccphpchccchchhhcc hhcppcphhchhhhhcchhhhp AAAAAAXXXXXXXAAAAAAAAA AAAAAAAAAAAAAAAAAAAAXX -AFEIARRNPGEPDREVRLACRD-----IFRSSKTLAKLIPLIEDVLAAG my_fasta_file ++ + ++++ ++ ++ ++ + ++ +++| | ++ |+ HQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVAL 1K62_B XAAAAAAXXXXXXXAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAXXXXX hpcphpphhphchhhpchhhhhhccphhhcphhchppchhhhhcpcphhh 351- 400d........:.........:...ddddd.:.........:.........: 401- 450.........:.........:.........:.........:.........: chph hhhhcchphhhhhhh hphpchphcp XXXX XXXXXXXXXXXXXXX XXXXXXXXXX EIQP-----PAPPEDAQPVAIPLP-----VSLGDAGHRS----------- my_fasta_file +++ + +|+++ +| + + |+ |+ + NQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQV 1K62_B XXXXAAAAAXXXXXXXXXXXXXXXAAAAAXXXXXXXXXXAAAAAAAAAAA pphphpchpphphhhppchhhhhchchphcphphhppphcpphchphcph 401- 450....ddddd:.........:....ddddd:.........ddddddddddd 451- 459......... p X --------S my_fasta_file + RALLQAQQA 1K62_B AAAAAAAAX chhhphpph 451- 459dddddddd. The seq2struc alignment: my_fasta_file ---> 2QZV_B align_len=789 ene=197.00 identity=1.901141 hpc_err=19.518378 size_err=0.000000 ins=0 del=484 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhp hhhh cc XBB XXXX XXXX XX --------------------------MTW-LPLN-----PIPL-----KD my_fasta_file + +++| +|+ GCGCPCGCGAMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDN 2QZV_B XXXXXXXXXXXXXXXXXBBXXXXXXXXBBXXXXXBBBBBXXXXBBBBBXX phphhhphphhhpcchhhchhhhhhhhhhcpppphpchchphcphhcpcp 1- 50dddddddddddddddddddddddddd...d....ddddd:...ddddd.: 51- 100.........:.........:.........:.........:.........: ch ph hhh XX BB BBB RV-SM----IFL-------------------------------------- my_fasta_file + + + ERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEI 2QZV_B XXBBBXXXXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX cchhhhhhchhphhhchhhhhhphhpccpppphhhchppphchchhcpch 51- 100..d..dddd:..dddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: phpphch hcphhhh XXXBBBB XXXBBBB ---------------QYGQIDV----------------IDGAFVL----- my_fasta_file + +++ ++++ RLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAG 2QZV_B XXXXXXXXXXXXXXXXXXBBBBXXXXXXXXXXXXXXXXXXXBBBBXXXXX chhpchhhhhhpchhccchphhphhhhpphhhhchhhchcccppcchhhp 101- 150ddddddddddddddd....:..dddddddddddddddd.:.....ddddd 151- 200.........:.........:.........:.........:.........: hc cpph cphhh hpph hhhhhc BB XXXX BBBBB XXXX BBBBBB ----------ID------KTGI-RTHIP--------VGSV-ACIMLE--- my_fasta_file + ++ | ++ ++ + +++ DEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGR 2QZV_B XXXXXXXXXXBBXXXXXXXXXXBBBBBBXXXXXXXXXXXXBBBBBBBXXX cchhhcphpphhhpcchchhchhphphhcppphhchchccchhcccpcpc 151- 200dddddddddd..dddddd.:..d.....dddddddd...:d......ddd 201- 250.........:.........:.........:.........:.........: hppchphhhhchhhphpphh hhhpchphch hh XXXXXXAAAAAAAAAXXXBB BBBXXXXXBB BB --------PGTRVSHAAVRLAAQVGTLL----VWVGEAGVRV-----YA- my_fasta_file + + + ||+++ +++++ +++++ +++ + VTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRG 2QZV_B XXXXXXXXXXXXXXXXXXXXXXXXXXBBXXXXBBBXXXXBBBXXXXXBBX hppcchhhcphphhhhhhhcchhchhchhhhpccphhhhchhpphcchcp 201- 250dddddddd.:.........:........dddd.......:..ddddd..d 251- 300.........:.........:.........:.........:.........: ppphpphcpc XXXXXXXAAA ----------------------------------------SGQPGGARSD my_fasta_file +++ + + + VLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGP 2QZV_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAA hhhcppcchhhphpcpchhhhchhcchhphhhhpphphchhhhhhchhph 251- 300dddddddddddddddddddddddddddddddddddddddd.........: 301- 350.........:.........:.........:.........:.........: chhhph chhhccchchchhcchhc AAAAAA AAAXXAAAAAAAAAAAAA KLLYQA-KLALDEDLRLKVVRKMFE------------------------- my_fasta_file +++| ++ + + ++ +++ DGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPL 2QZV_B AAAAAAXXXXXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXBBBXXBBBBB cpcpphppcchhcpccphhhphpcchccphpchhhhpcppphhhchhphh 301- 350......d..:.........:.....ddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: h chpch hhhccph cphcphc A AAXXX AAAAAAA AAAAAAA ----------------L----RFGEP---APARRSV------EQLRGIE- my_fasta_file + + + +++ + |+ ||+ EEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYV 2QZV_B BBBXXXXBBBBXXXXXXBBBBXXXXXAAAAAAAAAAXXXXXXAAAAAAAX ccpcpccchphphpchhhhcphhchhhphchchhcccphhhhcppcphhh 351- 400dddddddddddddddd.dddd.....ddd:......dddddd.......d 401- 450.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file QDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNLGHDPLADRGQK 2QZV_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXBBXXXXXXBBXXXXXXXXXXXX pchcppchchhhppphhhppcchhhccchhpphcchhphphchhhccppc 401- 450dddddddddddddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: ppchch phhhhhcp AAAAAA AAAAAAAA --------------GSRVRA--------TYALLAKQ-------------- my_fasta_file +| + ++ GTAKPLQPSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLD 2QZV_B BBBXXBBBXXXXXXAAAAAAXXXXXXXXAAAAAAAAXXXXXXXXXXXXBB pphchhphphhcpcpchhphchhhphhhphhchchcchchhhphchhphc 451- 500dddddddddddddd.....:dddddddd.:......dddddddddddddd 501- 550.........:.........:.........:.........:.........: hphphppcchchcc hccpc phpphhphhpp XXXXXXXXXXXXXX XXXXX AAAAAAAAAAA ---------YGVTWNGRRYDPKD------WEKGD-----TINQCISAATS my_fasta_file ++ |+ ++ + ++ ++ ++ PEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQ 2QZV_B XXXXBBXXXXXXXXXXXXXXXXXAAAAAAXXXXXAAAAAAAAAAAAAAAA hccphphhphphpchcchhhcchhhhhhphchhpchhphcphchhchphp 501- 550ddddddddd:.........:...dddddd:....ddddd:.........: 551- 600.........:.........:.........:.........:.........: hh hphpchhhhh hphh AA AAAAAAAAAA XXXX CL---YGVTEAAILA--------------------------AGYA----- my_fasta_file +++ ++++ |+ + LAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDD 2QZV_B AAXXXAAAAAAAAAAXXXXXXXXXXXXXXXBBXXXXXXBBXXXXXBBBBB hhhphhhchcpcpchhchhchhphhchhpchhchhhpchcphhhphphcc 551- 600..ddd....:.....dddddddddddddddddddddddddd....ddddd 601- 650.........:.........:.........:.........:.........: hhhphhhppchhp hhhchhchhchcphhhchhchhccph XXBBBBBXXXXXX AAAAAAAAAXAAAAAAAAAAAAAXXX PAIGFVHTGKPLS----FVYDIADIIKFDTVVPKAFEIARRNP------- my_fasta_file + + +++ + ++|+++++ +++ + + + FHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDV 2QZV_B XXBBBBBXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXAAAAAAA hhcpphchhchhhhphchpccpphcpphhhchccphhhhppphhhpphch 601- 650.........:...dddd..:.........:.........:...ddddddd 651- 700.........:.........:.........:.........:.........: pchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhc XXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXX ------GEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPE my_fasta_file + | +++++ + + |++ + ++ ++ +++++ + QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLER 2QZV_B AAAAAAXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXX pphchhcpcpcchhpcphphhhchpppppchhhchchpchcpchcpchcc 651- 700dddddd...:.........:.........:.........:.........: 701- 750.........:.........:.........:.........:.........: chph hh hh hhhphpchphcpp XXXX XX XX XXXXXXXXXXXXX DAQP--------VA----------IP----------LPVSLGDAGHRSS- my_fasta_file ++ ++ ++++++++++ QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGS 2QZV_B XXXXAAAAAAAAXXAAAAAAAAAAXXAAAAAAAAAAXXXXXXXXXXXXXA pchhcppchcchccchhchchhphhhcpppphchchcpchchhchcpcpp 701- 750....dddddddd..dddddddddd..dddddddddd...:.........d 751- 789.........:.........:.........:......... --------------------------------------- my_fasta_file VLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 2QZV_B AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA hhphchchphhhhcpchchcchcchcchchhhhchphch 751- 789ddddddddddddddddddddddddddddddddddddddd The seq2struc alignment: my_fasta_file ---> 1DV2_A align_len=450 ene=-57.00 identity=3.111111 hpc_err=30.888888 size_err=0.000000 ins=0 del=145 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + ++ + +++++ ++ + + + ++ ++++ GSHMLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADE 1DV2_A XXXXXXBBBBXXXAAAAAAAAAAAAAAXXBBBBBBBXXXXXXAAAAAXXB pphhhcchhhhpcpchhhchhchhcchphcphhhhpphccchchhhhhcc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhc hppchp hhhhchhhphpphhhhhpchphch BBBBB XXXXXX AAAAAAAAAXXXBBBBBXXXXXBB CIMLE----PGTRVS--HAAVRLAAQVGTLLVWVGEAGVRV--------- my_fasta_file + + ++ + +++ ++ ++ + TVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVER 1DV2_A BBBBBXXXXXXXXXXAAAAAAAAAAAXXXBBBXXXXXXXXXAAAAAAAAA phhhphhhphcphhphhhhhphhchpphhhhhhphphhpcphphhcphcc 51- 100.....dddd:.....dd..:.........:.........:.ddddddddd 101- 150.........:.........:.........:.........:.........: hhppphpphcpcchhhp hchhhccchch chhcch BBXXXXXXXAAAAAAAA AAAAXXAAAAA AAAAAA YASGQPGGARSDKLLYQ-AKLALDEDLRL---------------KVVRKM my_fasta_file +++++ |+++ ++| +++| ++++ +++ SGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRA 1DV2_A XXXBBXXXXAAAAAAAAXAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAA pphhhhphchcphchhpcchphhhhhcchphhhhhppcphhpcchccpch 101- 150.........:.......d.:.........ddddddddddddddd.....: 151- 200.........:.........:.........:.........:.........: hchchpch hhhccphc phcphcppchchphhhhhcphphph AAAAAXXX AAAAAAAA AAAAAAAAAAAAAAAAAAAAXXXXX FELRFGEP-----APARRSVE----QLRGIEGSRVRATYALLAKQYGVTW my_fasta_file ++| |+| +++ + + ++++ |+|+ +++ + IAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM 1DV2_A AAAAAXXXBBBBBXXXXXXXXBBBBXXAAAAAAAAAAAAAAAAAAXXXXX hhcchphhhhhchppppppcphchhcpchchhpphphpchchchhhppch 151- 200........ddddd......:.dddd....:.........:.........: 201- 250.........:.........:.........:.........:.........: ppcch chcc hc cpcp XXXXX XXXX XX XXXA -----NGRRY----------DPKD-------------WE-------KGDT my_fasta_file ++ + ++ +++ VYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPG 1DV2_A BBBBBXXXXXBBBBBBBBBBXXXXBBBBBBBBBBBBBXXBBBBBBBXXXX hhhcchhcphchhchphhhcpppphhhhhccchphpcchpchhcchhhhp 201- 250ddddd....:dddddddddd....ddddddddddddd..ddddddd...: 251- 300.........:.........:.........:.........:.........: hpphhphhpphhhphpchhhhh hphhhhhphhhppchhph AAAAAAAAAAAAAAAAAAAAAA XXXXXXBBBBBXXXXXXA INQCISAATSCLYGVTEAAILA----------AGYAPAIGFVHTGKPLSF my_fasta_file | ++ + + ++ ++++ +|+ + ++ ++ +| ++ ITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIKMNTRIQVEH 1DV2_A XXAAAAAAAAAAAAAAAAAAXXBBBBBBBBBBBXXBBBBBBBBXXXXXXA hphchcchhpcchhchhhchphcphpphchhhcppchhhhchppchphch 251- 300.........:.........:..dddddddddd.......:.........: 301- 350.........:.........:.........:.........:.........: hhchhch hchcphhhchh AAAAAAA AXAAAAAAAAA VYDIADI-IKFDTVVPKAF------------------------------- my_fasta_file + ++ + ++ PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTF 1DV2_A AAAAAAAXXXAAAAAAAAAXXXXXXXXXXXXXXXXBBBBBBBBXXXXXXX hhpchhpphchhccphchhhpphhphcpcchhhcphhhchchphcchpph 301- 350.......d.:.........ddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: chhc cp hpchcc chchhh cchhcp pcphh AAAA XX XXXXXA AAAAAA AAAAAA AAAAA EIAR--RN---PGEPDR-----EVRLAC--RDIFRS---------SKTLA my_fasta_file + ++ + + ++ + + + ++ | + LPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDV 1DV2_A XXXXBBXXBBBXXXXXXBBBBBXXXXXXBBXXXXXXBBBBBBBBBXXAAA hhphpchpchhhhpphphchcphhhhphphhhhhcphhpchhhhpcpcch 351- 400....dd..ddd......ddddd......dd......ddddddddd....: 401- 450.........:.........:.........:.........:.........: chhhhhcchhhh pchph hhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAAX XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX KLIPLIEDVLAA---GEIQP----PAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + + + ++ |++ + + |+ + ++++ + + + + AIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQ 1DV2_A AAAAAAAAAAAXBBBXXXXXAAAAAAAAXXAAAAAXXXXXXAAAAAXXXX hhhchcphhpchhhcphcpphchphchhpccphphpppphhhhccchphp 401- 450.........:..ddd....:dddd.....:.........:.........: The seq2struc alignment: my_fasta_file ---> 2EYI_A align_len=305 ene=-90.00 identity=6.229508 hpc_err=36.065573 size_err=0.000000 ins=71 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++++| ++ + + + + + + A--GHMEKQQRKTFT-----AWC----NSH------LRKA-----GTQI- 2EYI_A X XAAAAAAAAAAA AAA AAA AXXX XXXX h phhccppccphp hhh pph hcch ppph 1- 50.........:.........:.........:.........:.........: 51- 100i........:.........:i..iiiii.:...iiii..:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ |+ +|+ + +| ++ + ||++ + +| -ENIEEDFRDGLKLMLLLEV-IS-----GERLA----KPERGKM------ 2EYI_A XXXXXXXXXXAAAAAAAAA AA XXXXX XXXXXXX cphccchccphchhhhhch hp pcchh chccpch 51- 100.........:.........:.........:.........:.........: 101- 150iii...ii.:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ + + ++ ++ + + ++++ + +++ ++ ---RVH--KISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 2EYI_A AAA AAAAAAAAAAAAAAXXXXXXXXXAAAAAXXXAAAAAAAAAAA chh chpphpchhchhhpcphchhphphcchhcpphchphphhhph 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiii.....:....iiiiiiiiii.....:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |+++ ++ | +++++ ++ ++++|+| ILRFA---------IQDISVEETS----------AKEGLLLWCQRKTAPY 2EYI_A AAAAA XXXXBBXXBB AAAAAAAAAAAAAXXX hhchh hpchphccpp hccphhhhhpccphhh 151- 200.........:.........:.........:.........:.........: 201- 250...iiii..:.........:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ ++ ++ +|+ ++ + ++|++ +|+++ |+ KNV----NIQNFHISWKDGLGFC-ALIHRHRPELIDYGKLRKDDPLTNLN 2EYI_A XXX XXXXXXXXXXXXAAAA AAAAAAXXXXXXXXXXXXXXAAAAAA cph phpphhhphccphphh hhhhchchchhchpchcccchhpphp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...ii....:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++++ + +++ ++ + || + |+++ ++++ ++ |++ + TAFDVAEKYLDIPKMLDAEDIVG--TARPDEKAIMTYVSSFYHAFSGAQE 2EYI_A AAAAAAAAAXXXXXXXXAAAAAA XXXXXAAAAAAAAAAAAAAAXXXXX phhchhcchhchhchhchcchhp phchccchhhphhpphhhhhpphpc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + + FLEPG 2EYI_A XXXXX hhchp 301- 305..... The seq2struc alignment: my_fasta_file ---> 1W25_B align_len=454 ene=-87.00 identity=4.625551 hpc_err=35.903084 size_err=0.000000 ins=0 del=149 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhph hhhccchphhhh php ph X BBXXXXX XXXXXXXBBBBB XXX BB -M---TWLPLNP-------IPLKDRVSMIFL-------------QYG-QI my_fasta_file + ++ + ++ + ++ + + SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIIL 1W25_B XXBBBBBXXXXXAAAAAAAAAAAXXXBBBBBXXAAAAAAAAAAAXXXBBB phchhhhcchchphchhchchphchhchpphhcphphhhhhhcchhchhh 1- 50d.ddd....:..ddddddd:.........:.ddddddddddddd...d.: 51- 100.........:.........:.........:.........:.........: ch hcphh hhhccpphcphhh hpp hhhh BB XXXBB BBBBXXXXBBBBB XXX XBBB DV--IDGAF----------VLIDKTGIRTHIP-VGS----------VACI my_fasta_file ++ +| + + + ++ ++ |+ +|++ LDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASD 1W25_B BBXXXXXXXAAAAAAAAAAXXXXXXXXBBBBBXXXXAAAAAAAAAAXXXB hchhhhphcphphhcchccchppchhhhhhhphhcpcpcchpphcpphpc 51- 100..dd.....dddddddddd:.........:..d...dddddddddd...: 101- 150.........:.........:.........:.........:.........: hhchppc hphhhhchhhphpphhhhhpchphchhhp BBBXXXX XXAAAAAAAAAXXXBBBBBXXXXXBBBBX MLEPGTR--------------VSHAAVRLAAQVGTLLVWVGEAGVRVYAS my_fasta_file | +++ ++ ++++++ ++ +|++++ ++ + FLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDG 1W25_B BBBXXXXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXX hhpchhcchhhhhchcphpchchhhcchcpcchppcchphhhphhhchcp 101- 150.......dddddddddddddd........:.........:.........: 151- 200.........:.........:.........:.........:.........: pph pphcpcchhhphch h hc cchchch XXX XXXAAAAAAAAAAA A XX AAAAAAA GQP-----GGARSDKLLYQAKL---A-----LD--EDLRLKV-------- my_fasta_file + + + +++ +| | +| ++++++ LGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIV 1W25_B XXXBBBBBXXXAAAAAAAAAAAXXXXBBBBBXXAAAAAAAAAXXXXBBBB hppchhhhccpccphpchhhchphchchhhcpchcchchphpphhchhhh 151- 200...ddddd.:.........:..ddd.ddddd..dd....:..dddddddd 201- 250.........:.........:.........:.........:.........: hcchhchch pchhhhccphcph AAAAAAAAA XXXAAAAAAAAAA --------VRKMFELRF---------------GEPAPARRSVEQL----- my_fasta_file ++ ++ ++ + ++++++ + NAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDI 1W25_B BXXXXXXXAAAAAAAAAXXXXXXXXXBBBBBXXXXAAAAAAAAAAXXXBB phhhcphcphchphhhcpcccpcphhhhhhhchcccpchhchhchphpch 201- 250dddddddd.:.......ddddddddddddddd.......:.....ddddd 251- 300.........:.........:.........:.........:.........: cphcppchchphhhhhcphphphppcchchcchccpcphpphhph AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA -----RGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA my_fasta_file ++|+|++++|+ +++ ++ ++| + + + ++ + + + LSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRR 1W25_B BBXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXAA hpchhchpchphchcpphpccchpchhcpphchphchhhpcphpphhpcc 251- 300ddddd....:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: hpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhch AAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAA ATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKA my_fasta_file + ++ +++++ + +|+ + + ++ + + ++ +++| + + +++| YMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFA 1W25_B AAAAAAAAAAAAAAXXXXXXBBBBBBBXXAAAAAAAXXAAAAAAAAAAAA hhppphcphhcchphppchhphhhhchchhcchpcphphchpcchhcchh 301- 350.........:.........:.........:.........:.........: 351- 400.........:.........:.........:.........:.........: hchhccphpch ccch chhhcchhcppcphhchhhhhcc AAAAAXXXXXX XAAA AAAAAAAAAAAAAAAAAAAAAAA FEIARRNPGEP----DREV------RLACRDIFRSSKTLAKLIPLIED-- my_fasta_file | +++++ + + +++ +++ + ++ + ++ + LRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFT 1W25_B AAAAAXXXXXXBBBBXXXXBBBBBBXXXXAAAAAAAAAAAAAAAAXXXBB hchhpphchhchhhchppcchhhhhhcphhhchhchhcchchhhppphhp 351- 400.........:.dddd....dddddd....:.........:........dd 401- 450.........:.........:.........:.........:.........: hhhhpc hph hhhhcch phhhhhhhhphpchp AAAXXX XXX XXXXXXX XXXXXXXXXXXXXXX VLAAGE--IQP-------PAPPEDA----------QPVAIPLPVSLGDAG my_fasta_file | + | +++ +|++ |+ + + ++ +++ | VAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVG 1W25_B XXXXXXBBXXXBBBBBBBXXXXXXXAAAAAAAAAAAAAAAAAXXXXBBBB hhhpcchhphphphphphphpcpcphchhhcchccphhphchppcphhhp 401- 450......dd.:.ddddddd.:.....dddddddddd....:.........: 451- 454.... hcpp XXXX HRSS my_fasta_file ++++ KAAH 1W25_B XXXX chhh 451- 454.... The seq2struc alignment: my_fasta_file ---> 1QVR_C align_len=847 ene=246.00 identity=2.833530 hpc_err=18.890201 size_err=0.000000 ins=0 del=542 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph XBB -----------------------MTW------------------------ my_fasta_file ++ ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKA 1QVR_C XXXXAAAAAAAAAAAAAAAAXXXXBBXAAAAAAAAXXXXXXAAAAAAAXX cchpphhcchhhphphhhpchchphhchhhhhhhhhccccphhhchhcch 1- 50ddddddddddddddddddddddd...dddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: hhhphhhhccchph XXXXXXXXXXXXBB ----------------LPLNPIPLKDRVSM-------------------- my_fasta_file + ++ + ++ GADPKALKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKD 1QVR_C XXXAAAAAAAAAAAAAXXXXXXXXXXXXBBXAAAAAAAAAAAAAAAAAXX phchchhcchpccchhchhchcphchpphhppchpphhpchcphhcchcc 51- 100dddddddddddddddd...:.........:dddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNAL 1QVR_C XXXXAAAAAAAAAAXXXXXXXXAAAAAAAXXXXXXXXXXXXXXXXXXXAA chhhhcphhhhhhchphphhphchhcphhcchcppcphppchhcpphphh 101- 150dddddddddddddddddddddddddddddddddddddddddddddddddd 151- 200.........:.........:.........:.........:.........: hhh phpph chhcphhhhhc BBB XXXBB BBXXXBBBBBB ---IFL-----------QYGQI------------DVIDGAFVLID----- my_fasta_file + + + + + ++ + ||| EQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVG 1QVR_C AAABBBAAAAAAXXXXXXXXXXAAAAAAAAAAAAXXXXXBBBBBBXXXXX cphphchpchhhcpchchhhpcccchcchhphhhccpcpphhhhpchphp 151- 200ddd...ddddddddddd..:..dddddddddddd.....:.....ddddd 201- 250.........:.........:.........:.........:.........: cpphcphhh hpph XXXXBBBBB XXXX --------------------KTGIRTHIP-----------------VGSV my_fasta_file + |+|+ + ++ KTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 1QVR_C AAAAAAAAAAAAAAXXXXXXXXXXBBBBBXXXAAAAAAAAAAAAAXXXXX cphhhcphhpchhcpchhcphcpcchhphphpphhhphchcpchccchch 201- 250dddddddddddddddddddd.........ddddddddddddddddd...: 251- 300.........:.........:.........:.........:.........: hhhhh c hppch p hhhhc hhhphpphhhhh pc BBBBB B XXXXX X AAAAA AAAAXXXBBBBB XX ACIML---E----PGTRV-----S--HAAVR---LAAQVGTLLVWV--GE my_fasta_file ++ ++ + +|+++ ++ ++++| +++ ++ VIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLI 1QVR_C BBBBBXXXXAAAAXXXXXBBBBBXAAAAAAAXXXAAAAXXBBBBBBXXXX hhpchhppppchhhhhcchhphhphpchcphhchpphhchhhhcpchchh 251- 300.....ddd.dddd.....ddddd.dd...:.ddd.....:......dd.: 301- 350.........:.........:.........:.........:.........: hphch hhpp XXXBB BBXX ------------------AGVRV----------------YASG------- my_fasta_file + + GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHG 1QVR_C AAAAAAAAAAAAAAAAAAXXXBBXAAAAAAAAAAAAAAXXXXXAAAAAAA phpphcchcchccchhhccchphhhhcchphccphphhcphccchchhhp 301- 350dddddddddddddddddd.:...dddddddddddddddd:...ddddddd 351- 400.........:.........:.........:.........:.........: phpph cpcch hhphchh hc XXXXX AAAAA AAAAAAA XX --------------QPGGA----RSDKL----LYQAKLA----LD----- my_fasta_file + ++|| +++|++ + VRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEI 1QVR_C AAAAAAAAAAAAAAXXXXXAAAAAAAAAXXXXAAAAAAAXXXXXXAAAAA hchpcphhhhhhphphchhpccchhcchhchhcchhhchchhhcphhcch 351- 400dddddddddddddd.....dddd.....dddd.......dddd..ddddd 401- 450.........:.........:.........:.........:.........: cchchchhcchhchchpc hhhhccphcphcphc AAAAAAAAAAAAAAAAXX XAAAAAAAAAAAAAA ------EDLRLKVVRKMFELRFGE--------PAPARRSVEQLRGIE--- my_fasta_file +++++++ + + + ++ +|+ + ++| + DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEW 1QVR_C AAAAAAAAAAAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAAAAAAAAXXX chhcccchphchccchhccccchcppcchchhchchhchpcchhchchch 401- 450dddddd...:.........:....dddddddd.......:.......ddd 451- 500.........:.........:.........:.........:.........: ppchchphhhhhcp hp h ph AAAAAAAAAAAAAA XX X XX --------------GSRVRATYALLAKQ------YG--V---------TW my_fasta_file + ++ ++ + + ++ ++ EREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAE 1QVR_C XXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXXBBXAAAAAAAAAXX ccccchhcchcchphchcchccchchhccphchpchhchchpchhchchc 451- 500dddddddddddddd.....:........dddddd..dd.ddddddddd.: 501- 550.........:.........:.........:.........:.........: ppc chch c chccpc phpphhphhp XXX XXXX X XXXXXX AAAAAAAAAA NGR----RYDP------K------DWEKGD----TINQCISAAT------ my_fasta_file + + ++ + + + ++ + + ++ VEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLE 1QVR_C XXXAAAAXXXXAAAAAAXAAAAAAXXXXXXAAAAAAAAAAAAAAXXXXXX hchhpcchcphchhchchpccchhchhpchpphhhpchhcpcccchhchc 501- 550...dddd..:.dddddd.dddddd.....:dddd.....:....dddddd 551- 600.........:.........:.........:.........:.........: phhhphpchhhhh AAAAAAAAAAAAA -----------------SCLYGVTEAAILA-------------------- my_fasta_file ++ ++ |+ ++ EELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 1QVR_C XXXXXBBBBBXXXXXXXAAAAAAAAAAAAAXXXXXBBBBXXXXXXXXXXX cchhcchhppcchhchhhchhcchchphcchpchhpphhhhphpphpcpc 551- 600ddddddddddddddddd..:.........:dddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: hph hhh h ph h XXX XXX B BB B -AGY-------APA----I---------------------GF-------V my_fasta_file | + +++ | ++ + LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT 1QVR_C XXXXAAAAAAAXXXBBBBBXXXXXXXAAAAAAAAAAAXXXBBXXXXXXXB hhcphhhphhcpcchhhchchpchhcchhhpchhphhhphhphccppphp 601- 650d...ddddddd...dddd.ddddddddddddddddddddd..ddddddd: 651- 700.........:.........:.........:.........:.........: h pp chhphhhchhchh c hcphhhch hchhc B XX XXXXAAAAAAAAA X AAAAAAAA AAAAA H-TG------KPLSFVYDIADII---K----FDTVVPKA-----FEIAR- my_fasta_file + + + + + ++ + +| + + + ++++ EAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTV 1QVR_C BXXXBBBBBBXXXXAAAAAAAAAXXXXAAAAAAAAAAAAXXXXXAAAAAX chhccchhphhhhcchcchhhchhphhhphhccpchpcphpcphchcpph 651- 700.d..dddddd.........:...ddd.dddd........ddddd.....d 701- 750.........:.........:.........:.........:.........: cphpchc cchchhhcchhcppcphh chhhhhcchh XXXXXXX AAAAAAAAAAAAAAAAAA AAAAAAAAAA ----RNPGEPD--REVRLACRDIFRSSKTLA---------KLIPLIEDVL my_fasta_file | | |+ ++ +++++ + + +|++|+|+| IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVV 1QVR_C XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXBBBBXAAAAAAAAAA hhhppphpphhhhcphpcphhhcchccchhchhpphhchchhpchcchhh 701- 750dddd.....:.dd......:.........:.ddddddddd.........: 751- 800.........:.........:.........:.........:.........: h hpc h phhhhhc chphhh A XXX X XXXXXXX XXXXXX A------AGE--------I----------QPPAPPE-----DAQPVA--- my_fasta_file ++ + +++ ++ + + FRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVF 1QVR_C AXXXXXXXXXAAAAAAAAXAAAAAAAAAAXXXXXXXBBBBBXXXXXXBBB hchhpccphcphhchphphhchchhccchphchpchhcchhhccphchhh 751- 800.dddddd..:dddddddd.dddddddddd:......ddddd......ddd 801- 847.........:.........:.........:.........:....... hhh hhphpch phc pp XXX XXXXXXX XXX XX IPL--------------------PVSLGDA------GHR------SS my_fasta_file + + ++++ + | + ++ GARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVPA 1QVR_C XXXAAAAAAAAAAAAAAAAAAAAXXXXXXXBBBBBBXXXBBBBBBXX phchhcchhpcchcphhhpchhhpchccpcchphchphhphhhhhhh 801- 847...dddddddddddddddddddd......:dddddd...dddddd.. The seq2struc alignment: my_fasta_file ---> 1PJT_B align_len=459 ene=-100.00 identity=3.050109 hpc_err=33.551198 size_err=0.000000 ins=2 del=154 begin1=0 begin2=0 1- 50.ii......:.........:.........:.........:.........: hphhhhphhhhccchphhhhphp phchhcphhhhhc XBBXXXXXXXXXXXXBBBBBXXX BBBBXXXBBBBBB MTWLPLNPIPLKDRVSMIFLQYG--------QIDVIDGAFVLID------ my_fasta_file | + |+ ++ + +| + ++ ++ + ++ M--DHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQ 1PJT_B X XXXXXXXXXXXXBBBBBXXXAAAAAAAAAAAAXXXBBBBBBXXXXAA h chhhhhhphcccchhhhpppchhccchchhhchphchphphhphhhp 1- 50.........:.........:...dddddddd........:....dddddd 51- 100.........:.........:.........:.........:.........: cpphcphh hhpphhhhhhchppc hphhhhchhhphpp XXXXBBBB BXXXXBBBBBBXXXX XXAAAAAAAAAXXX ------KTGIRTHI-----PVGSVACIMLEPGTR--VSHAAVRLAAQVGT my_fasta_file + + + + + + + | ++ + |+ + + FTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRI 1PJT_B AAAAAXXXXXBBBBXXXXXXXXXXXXBBBBXXXXAAAAAAAAAAAAAXXX hphhhpcphhphhcphhccphhcphhhhhhhpcccphppchpchhcpcch 51- 100dddddd...:....ddddd:.........:....dd...:.........: 101- 150.........:.........:.........:.........:.........: hhhh hpchph chhh p pphpph cpcchhhphchh BBBB BXXXXX BBBB X XXXXXX AAAAAAAAAAAA LLVW------VGEAGV-RVYA-S-----GQPGGA--RSDKLLYQAKLA-- my_fasta_file + + + + ++ + ++| + ++ +|++ + FCNVVDAPKAASFIMPSIIDRSPLMVAVSAGGTSPVLARLLREKLESLLP 1PJT_B BBBBXXXXXXXXXXXXBBBBBXXBBBBBXXXXXXAAAAAAAAAAAAAAXX hhphhchhchhphhhhphhccphhhhhhphpppphhhhchhccchcphhh 101- 150....dddddd......d..:.d.ddddd.:....dd...:........dd 151- 200.........:.........:.........:.........:.........: hc cchchchhcchhchchpch hhhccph cphcphcp pc XX AAAAAAAAAAAAAAAAXXX AAAAAAA AAAAAAAA AA LD--EDLRLKVVRKMFELRFGEP----APARRSV---EQLRGIEG---SR my_fasta_file ++ + | ++++ +++ ++++ ++ + |+ +++ QHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEK 1PJT_B XXAAAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAXXXAAAAAAAAXXXAA phhpphhchhpphchchccphhphpcccchhcchhhpcchhpphhphccc 151- 200..dd.....:.........:...dddd..:....ddd..:.....ddd.: 201- 250.........:.........:.........:.........:.........: hchphhhhhcphphphpp cchchcchccpcphpphhp AAAAAAAAAAAXXXXXXX XXXXXXXXXXXXAAAAAAA VRATYALLAKQYGVTWNG----RRYDPKDWEKGDTINQCIS--------- my_fasta_file +++++++ + ++ | + | | ++ ++ ++++ AVNATTERLFSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYD 1PJT_B AAAAAAAAAAAXXXXXXXBBBBBBXXXXXXXXXXAAAAAAAXXXXBBBBX hhphppcchhpchhchcpchhhhphphpchphhphcphpphpphchhhhc 201- 250.........:........dddd.......:.........:.ddddddddd 251- 300.........:.........:.........:.........:.........: hhpp hhhphpchhhhhhphhhhhphh AAAA AAAAAAAAAAAAXXXXXXBBBB ----AATS--------------------CLYGVTEAAILAAGYAPAIGFV my_fasta_file ++++ + ++ + |+++++++++ + RLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVR 1PJT_B XXXXAAAAXXXXXXXBBBBXXXXXXXXXAAAAAAAAAAAAAXXXBBBBBB chhpcchhphhccchcchhhpcchphhhhhpcchpphhhcchpcpcchhc 251- 300dddd....dddddddddddddddddddd.:.........:.........: 301- 350.........:.........:.........:.........:.........: hppchhphhhc hh chhchcphhhc h BXXXXXXAAAA AA AAAXAAAAAAA A ----HTGKPLSFVYD------IA----DIIKFDTVVPK-----------A my_fasta_file ++++ + +++ + + + +++ + LKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRD 1PJT_B XXXXXXXXXXXAAAAXXXXXXXXBBBBXXXXAAAAAAAXXXXXXXXXXXX hcppchhhhpcppcchcphhhhphhhphhhphphhpphphhpphhhphcc 301- 350dddd.....:.....dddddd..dddd..:........ddddddddddd: 351- 400.........:.........:.........:.........:.........: hc hhccphpchccchchhhcc hhcppcphhchhhhhcchh AA AAAXXXXXXXAAAAAAAAA AAAAAAAAAAAAAAAAAAA FE-----IARRNPGEPDREVRLACRD-----IFRSSKTLAKLIPLIEDVL my_fasta_file + + +++ + + + + + + | +++ ++ + YAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFG 1PJT_B XXBBBBBXXXXXXXXXXAAAAXXXXXBBBBBXXXXXAAAAAAAAAXXXXX hhpphchhpphhcpppchchcphhhccpphhhhhphpphhphpcchhhhp 351- 400..ddddd..:.........:......ddddd........:.........: 401- 450.........:.........:.........:.........:.........: hhp chphhhh hcc hphhhh hhhhph AXX XXXXXXX XXX XXXXXX XXXXXX AAG------EIQPPAP------PED-----AQPVAI-----PLPVSL--- my_fasta_file ++ ++ +++ +++ +++ + +++ MQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALR 1PJT_B XXXBBBBBBXXXXXXXBBBBBBXXXAAAAAXXXXXXBBBBBXXXXXXAAA hphchhhhhhcpppphcpchhhphhpphpchhpphcphhhhhhpchhhhc 401- 450...dddddd:......dddddd...ddddd......ddddd......ddd 451- 459......... pchphcpp XXXXXXXX -GDAGHRSS my_fasta_file +++ + DKLNWFSNH 1PJT_B AXXXXXXXX cchphhpph 451- 459d........ The seq2struc alignment: my_fasta_file ---> 3DL8_B align_len=773 ene=195.00 identity=2.328590 hpc_err=19.922380 size_err=0.000000 ins=0 del=468 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hp hhhhp hhhh XB BXXXX XXXX -MT-------------------------WLPLN-------------PIPL my_fasta_file ++ ++ + +++ NKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKG 3DL8_B XXXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAXXXX pchhchpccphpchcchhpchchhcpchcphpcchhchcphchccchccp 1- 50d..ddddddddddddddddddddddddd.:...ddddddddddddd...: 51- 100.........:.........:.........:.........:.........: ccc hphhhhphp phchhcphhhh XXX XBBBBBXXX BBBBXXXBBBB KDR------------------VSMIFLQYG---------QIDVIDGAFVL my_fasta_file + + | ++ ++ ++++ ATTDDLLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEG 3DL8_B XXXAAAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAXXBBXXXXXXX hppcchhhchhhhhcchpcchpphhhhchphhpphhhhcpphhchcppcp 51- 100...dddddddddddddddddd........:ddddddddd:.........: 101- 150.........:.........:.........:.........:.........: h ccpphcphhh hpphhh B BXXXXBBBBB XXXXBB I------------DKTGIRTHIP---------------------VGSVAC my_fasta_file + + +++ + ++ + KTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 3DL8_B XAAAAAAAAAAAAXXXXXBBBBBXXAAAAAAAAAAXAAAAAAXXXXXXXX cphppphhhhhphhppcphhhhphpchhhpcchcphpchhchhphphphp 101- 150.dddddddddddd......:...ddddddddddddddddddddd.....: 151- 200.........:.........:.........:.........:.........: hhhchppc hp hhhhchhhp hpphh BBBBXXXX XX AAAAAAAAA XXXBB IMLEPGTR------VS------HAAVRLAAQ--------------VGTLL my_fasta_file ++++ ++ +++ ++ LNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAV 3DL8_B XXXXXXXXAAAAAAXXBBBBBAAAAAAAAAAXXXXXXXXXXXXXXXXXBB hpphpcccccchhhhchphppppchphchhccphhhhccphhpchhhhhh 151- 200........dddddd..dddddd.......:.dddddddddddddd....: 201- 250.........:.........:.........:.........:.........: hh hpchphchhhppphpphcpcchhhphchhhccch BB BXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAA VW-----VGEAGVRVYASGQPGGARSDKLLYQAKLALDEDL--------- my_fasta_file + + +++ + ++++ + ++++ + + IDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIK 3DL8_B BBXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAXXXXXXXXX hcchcphhhcchcphhhhppphhcppchhhphphhhcphchccchphchc 201- 250..ddddd..:.........:.........:.........:.ddddddddd 251- 300.........:.........:.........:.........:.........: chchhcchh chchpch hhhccphcphc AAAAAAAAA AAAAXXX AAAAAAAAAAA -------RLKVVRKMF-----ELRFGEP-----APARRSVEQLR------ my_fasta_file + + +++ |+++ + +++++ + TKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 3DL8_B XXXXXXXAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXX pchhphpccphpchcchhphcphhchchhhhphhhpphhchhhhhpcchc 251- 300ddddddd..:......ddddd.......ddddd......:....dddddd 301- 350.........:.........:.........:.........:.........: phcppchch AAAAAAAAA ---------------------------GIEGSRVRA-------------- my_fasta_file + ++ + YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATI 3DL8_B XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXXXXXXXXXXXXXX hhhccpphhhhcphppchhcpcchpcphhphhchccphchppcphphhph 301- 350ddddddddddddddddddddddddddd..:......dddddddddddddd 351- 400.........:.........:.........:.........:.........: phhhhhcp hphphppcch AAAAAAAA XXXXXXXXXX --------------------TYALLAKQ-------YGVTWNGRRY----- my_fasta_file |++++ ++ |+ ++++ TFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPD 3DL8_B XXXXXXXXXXXBBBBXXXXXAAAAAAAAXXXXXXXXXXXXXXXXXBBBBB phpphhchhcchhphppphcpcccchcphhphphhphhppchhhcccchc 351- 400dddddddddddddddddddd........ddddddd....:.....ddddd 401- 450.........:.........:.........:.........:.........: chcc hcc pc phpphhphhpphh XXXX XXX XX AAAAAAAAAAAAA ---DPKD----------------WEK-----GD-TINQCISAATSCL--- my_fasta_file ++ + + ++ + ||+ + ++ LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIP 3DL8_B BBBXXXXAAAAAAAAAAAAAAAAXXXBBBBBXXAAAAAAAAAAAAAAXXX hhhcphcpchchhhcchhpchhppphhhhpphhhcppchhpchhcpcphh 401- 450ddd....dddddddddddddddd...ddddd..d.....:.......ddd 451- 500.........:.........:.........:.........:.........: hphpchhhhhhphhhh h AAAAAAAAAAXXXXXX B --------YGVTEAAILAAGYAPA----I--------------------- my_fasta_file + ++ |++||+++| + HQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGL 3DL8_B XBBBXXXXAAAAAAAAAAXXXXXXBBBBBXXXXXXXXXXXXXXXXXXXXX hphhphcphccchphhcchppcphhphhpphhpcppchchpcphcchpph 451- 500dddddddd.:.........:....dddd.ddddddddddddddddddddd 501- 550.........:.........:.........:.........:.........: phhhppchhphhhchhchh chcph hhchh BBBBXXXXXXAAAAAAAAA XAAAA AAAAA GFVHTGKPLSFVYDIADII-------------------KFDTV--VPKAF my_fasta_file + |+| +|++ |+++++ + + + + AVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 3DL8_B BBBBXXXXXXAAAAAAAAAXXXXXXXXXBBBBBBBXXXXAAAAXXAAAAA hhhppcchcpcchcpphcpcppcppchphpphhhphccchhcchphccph 501- 550.........:.........ddddddddddddddddddd.:...dd....: 551- 600.........:.........:.........:.........:.........: chhc cphpchc AAAA XXXXXXX EIAR-------RNPGEPD-------------------------------- my_fasta_file + + ++ AMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQ 3DL8_B AAAAXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA hhhcchphccpphhppchhpchhcpppcchcppphcpccphhphcchhcp 551- 600....ddddddd.......dddddddddddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: cchchhhcchhc ppcphhchhhhhcchhh h AAAAAAAAAAAA AAAAAAAAAAAAAAAAA X --REVRLACRDIFR----SSKTLAKLIPLIEDVLA------------A-- my_fasta_file + +++++ +++++ +++ | | + QREVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLD 3DL8_B AAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXAA pcchhhcpchchhcpcphcchhcphhcpphcchhhhhphccchhcchchc 601- 650dd.......:....dddd.:.........:.....dddddddddddd.dd 651- 700.........:.........:.........:.........:.........: pchphhhhhcchphhhhh hhh XXXXXXXXXXXXXXXXXX XXX --------GEIQPPAPPEDAQPVAIP--------------------LPV- my_fasta_file + ++| + ++ +++| + + GLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGK 3DL8_B AAAAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXA phhchhppphhccphhccpchhpcchcchhchhhcchhpchpccccphpc 651- 700dddddddd.:.........:......dddddddddddddddddddd...d 701- 750.........:.........:.........:.........:.........: phpchphc XXXXXXXX ------------------------------------SLGDAGHR------ my_fasta_file + + + + EQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQME 3DL8_B AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAA cphcchcchhhhchhcpchhchhchhcphcpphhhchhhppphhcchphc 701- 750dddddddddddddddddddddddddddddddddddd...:....dddddd 751- 773.........:.........:... pp XX ---------------------SS my_fasta_file + GFAMFEHMIESIEDEVAKFVMKA 3DL8_B AAAAAAAAAAAAAAAAAAAAAXX phhhhchhhcphccchhchhhch 751- 773ddddddddddddddddddddd.. The seq2struc alignment: my_fasta_file ---> 3EKJ_A align_len=330 ene=-77.00 identity=5.454545 hpc_err=43.636364 size_err=0.000000 ins=12 del=25 begin1=0 begin2=0 1- 50.........:.........:.........:.........:....i....: h phhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhh X BBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBX M----TWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPV my_fasta_file + ++ +++ |+ + +++ +++ ++ +++ ++|+ LENVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGD-GPVLL 3EKJ_A XBBBBBBBBXXXXBBBBBBBBBBBXXXXXBBBBBBBBBBBBXXX XXXXX hcphhhhhccpcpphchphchchphccpphphhhhhpppphhpc phhhh 1- 50.dddd....:.........:.........:.........:.........: 51- 100.........:.....iiiiii........:..iii....:........ii pphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcp XXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAA GSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARS my_fasta_file + + ++ + + + + + | ++ | + |++ PDNHYLSTQSKLSKD------PNEKRDHMVLL---EFVTAAGITLGMD-- 3EKJ_A XXXBBBBBBBBBBXX XXXXXXBBBBB BBBBBBXXXXXXX hcphhhppppchpcc hpcccchhhhh chhphhphphphc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: cchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchc AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAA DKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVR my_fasta_file + ++ + ++ + + ++ + + +|+++ ++ + + ++ +|| +++ ELYKGGTGGSMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATY 3EKJ_A XXXXXXXXXXBBBBBBBBBBBXXBBBBBBBBBBBBXXXXBBBBBBBBXXX chhcpppppphhpcpcchhpphhhhhhchcpchpphchphppcpcpchph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hphhhhhcphphphppcchchcchccpcphpphhphh pphh AAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAA AAAA ATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAA---------TSCL my_fasta_file + +|+ +++ + ++++ + ++ + + ++++ GKLTLKFICTTGKLPVPWPTLVTTLGVQCFSRYPDHMKQHDFFKSAMPEG 3EKJ_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXBBBBBBBBBXXXX pchphchhhpppchhhhhhphhpphphphhpchhchhcphchhcphhhcp 151- 200.........:.........:.........:.......ddddddddd...: 201- 250.........:.........:.........:.........:.........: hphpchhhhhhphhhhhphhh ppchhphhhchhchhchcph AAAAAAAAAAXXXXXXBBBBB XXXXXXAAAAAAAAAXAAAA ---YGVTEAAILAAGYAPAIGFVH------TGKPLSFVYDIADIIKFDTV my_fasta_file + +++ +++++++++|+++ + + + + ++ +|+++ YIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKL 3EKJ_A BBBBBBBBBBBXXBBBBBBBBBBBXXXXXXXXXXXXXXXXXXXXXXAAAA hhpccphhhcccpphcpchchchcpcphhpchchcphchcccpphhphch 201- 250ddd......:.........:....dddddd.........:.........: 251- 300.........:.........:.........:.........:.........: hhchhchhccphpchc cchchhhcchhcppcphhchhhhhcchhhhp AAAAAAAAAXXXXXXX AAAAAAAAAAAAAAAAAAAAAAAAAAAAAXX VPKAFEIARRNPGEPD---REVRLACRDIFRSSKTLAKLIPLIEDVLAAG my_fasta_file + ++ + +++++ + ++++ |+++ | |+ ++ + +++ EYNTRDQLTEEQIAEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEA 3EKJ_A AAAAAAAAAXXXXXXXBBBXXXAAAAAAXXXXXXXAAAAAAAAAAAXXBB chppccphpccphhchcchhphhcccpcpphppcphpphhcphppphpch 251- 300.........:......ddd:.........:.........:.........: 301- 330.........:.........:.........: chphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file | |+ +++ | ++++ + + + | + ELQDMINEVGADGNGTIDFPQFLTMMARKM 3EKJ_A BAAAAAAAAAAXXXXXXXXXXXXXXXXXXX chpchhpchphcpppphchhphhphhhcch 301- 330.........:.........:.........: The seq2struc alignment: my_fasta_file ---> 3E1Y_B align_len=414 ene=-84.00 identity=2.898551 hpc_err=38.164252 size_err=0.000000 ins=0 del=109 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccchphhhh X BBXXXXXXXXXXXXBBBBB M-------------TWLPLNPIPLKDRVSMIFL----------------- my_fasta_file +++ ++ +++ ++ AADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEF 3E1Y_B XAAAAAAAAAAAAAAAXXXXXXXXXXXBBBBBBXXXXXAAAAAAAAAAAA hhccphchhchcchhcphchhcppppphhphhhhhccphpchhchhhcch 1- 50.ddddddddddddd.....:.........:...ddddddddddddddddd 51- 100.........:.........:.........:.........:.........: phpphchhcp hhhhhc cp XXXBBBBXXX BBBBBB XX --------------------------QYGQIDVIDG-AFVLID-----KT my_fasta_file + ++ | + GTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGK 3E1Y_B AAXXXXXXAAAAAAAAAAAAAAAAAAXXXXXXXXXXBBBBBBBXXXXXXX pphpphcpchpchphhphhpphppchchhpchhhpphhhhhpphhpccpc 51- 100dddddddddddddddddddddddddd...:......d..:...ddddd.: 101- 150.........:.........:.........:.........:.........: ph cphhh hpphhhhhhchppchphhhhchhhphpphhhhhpchp XX BBBBB XXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXX GI-RTHIP----VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG- my_fasta_file + + + + ++ + +++ + +|++ + ++ +| EKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGA 3E1Y_B XXBBBBBBXXXXXXXXXBBBBBXXXXXXXXXXXXXXXXBBBBBBBXXXXB ccchphchchhchhppphhhhcpchhpchhphhhpccpchphhhhcppph 101- 150..d.....dddd.......:.........:.........:.........d 151- 200.........:.........:.........:.........:.........: hchhhpp phpphcpcchhhphchhhccchchchhcchhchchpchh XBBBBXX XXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXA -VRVYASG---QPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPA my_fasta_file + + + + +|+ ++++ +++ ++++ ++ +++++ | LFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVA 3E1Y_B BBBBBBXXBBBBBBBBXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAA hhpphppppcchhhchphchhcchpcpppphhchhchchccchphhcchh 151- 200d.......ddd........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhccphcphcphcppchc hphhhhhcphphphppcchchcc h AAAAAAAAAAAAAAAAAA AAAAAAAAAXXXXXXXXXXXXXX X PARRSVEQLRGIEGSRVR----ATYALLAKQYGVTWNGRRYDPKD----W my_fasta_file ++++ +++ ++ ++++ +++ ++++ + ++ |++ +++ ETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDI 3E1Y_B AAAAAAXXXXXXXXXXXXBBBBXXXXAAAAXXXXXXXXXXXXXXXBBBBX cphhphhhppcchphhphhhhpphchcpchpppchhcpchppchhchhch 201- 250.........:........dddd.......:.........:.....dddd: 251- 300.........:.........:.........:.........:.........: ccp cphpphhph hpph hhphpchhhhhhphhhhhphhhppchhph XXX XAAAAAAAA AAAA AAAAAAAAAAAXXXXXXBBBBBXXXXXXA EKG-DTINQCISA--ATSC--LYGVTEAAILAAGYAPAIGFVHTGKPLSF my_fasta_file +| ++ + ++ + + ++ |++ +++ ++ + +++ ++ +++ SYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVE 3E1Y_B XXXAAAAAAAAAAXXAAAAXXAAAAAAAAAAAAAAAAAXXXXXXBBBXXA phppcpphpphhchppchhpphchhpccchhpchhcchppcppchhhphc 251- 300...d.....:...dd....dd........:.........:.........: 301- 350.........:.........:.........:.........:.........: hhchhchhch cphhhchhchhccphpchccchchhhcchhcppc AAAAAAAAXA AAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAA VYDIADIIKF----DTVVPKAFEIARRNPGEPDREVRLACRDIFRSSK-- my_fasta_file ++++|++ ++ ++++ ++ +++ + |++| +++ | DTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSH 3E1Y_B AAAAAAAXXXBBBBBBBXXXXXXXXXXXXXXXXAAAAAAXXXXXXXXXBB cphchhchphhchhhhhcphchhchhhhhpppcccchhhhphcpccccph 301- 350.........:dddd.....:.........:.........:........dd 351- 400.........:.........:.........:.........:.........: phhchhhhhcchhhhp chphhhhhc chphhh h AAAAAAAAAAAAAAXX XXXXXXXXX XXXXXX X --TLAKLIPLIEDVLAAG-----EIQPPAPPE----DAQPVA-------I my_fasta_file ++ +++ +++++ + ++++ + + +++ FTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGF 3E1Y_B BBXXXXAAAAAAAAAXXXBBBBBXXXXXXXXXBBBBXXXXXXAAAAAAAX hpcccpppchchhcphhhhchhhpphcchphphchhpccppcppphhcph 351- 400dd.......:........ddddd......:..dddd...:..ddddddd: 401- 414.........:.... hhhhphpchphcpp XXXXXXXXXXXXXX PLPVSLGDAGHRSS my_fasta_file ++ + + + GGIGGILRYRVDFQ 3E1Y_B XXBBBBBBBXXXXX pphpphhchchchp 401- 414.........:.... The seq2struc alignment: my_fasta_file ---> 1N0U_A align_len=840 ene=235.00 identity=2.976190 hpc_err=18.452381 size_err=0.000000 ins=0 del=535 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhhc X BB XXXXXXXXX ---------------M-----TW------------------LPLNPIPLK my_fasta_file + + + + AFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAG 1N0U_A XXXAAAAAAAAAXXXXBBBBBBBXXXXXXAAAAAAAAAAAAXXXXXXXXX hhphcphcphhcchpphcphphhhhhchpcpphpcphhpchphhphhchp 1- 50ddddddddddddddd.ddddd..dddddddddddddddddd........: 51- 100.........:.........:.........:.........:.........: cch phhhhph pphchhcp hhhhhc c XXX BBBBBXX XBBBBXXX BBBBBB X DRV--SMIFLQY------GQIDVIDG-AFVLID--------K-------- my_fasta_file ++ ++++ + ++ +++ + +++| EARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINL 1N0U_A XXXBBBBBBBXXAAAAAAXXXXXXXXBBBBBBBXXXXXXXXXAAAAAAAA chchpcpccccpccphphcpphhphhpchpccchcchcpcpcppphhhph 51- 100...dd....:..dddddd.:......d..:...dddddddd.dddddddd 101- 150.........:.........:.........:.........:.........: pph cphhh h pph hhhhhch ppchp XXX BBBBB X XXX BBBBBBX XXXXX TGI--RTHIP-----V------------GSV-ACIMLEP------GTRVS my_fasta_file + + +++ + ++ | ++|+ | | IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK 1N0U_A XXXBBBBBBBXXXXXXAAAAAAAAAAAAXXXBBBBBBBXAAAAAAXXXXX hcphphhchppchphhhchpcphhhhhcphcphhhppcphhcphhpcchc 101- 150...dd....:ddddd.dddddddddddd.:.d.......dddddd....: 151- 200.........:.........:.........:.........:.........: hhhhchhhp hpp h hhh AAAAAAAAA XXX B BBB -------------HAAVRLAAQ-------------VGT----L----LVW my_fasta_file + +| ++++ + + + PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQV 1N0U_A AAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXBBBBBXXXXBBB hhhhhpchcchhhchphpccchhpphhcphcphphhhpphhcchhpchph 151- 200ddddddddddddd......:..ddddddddddddd...dddd.dddd..: 201- 250.........:.........:.........:.........:.........: h pchph c hhh ppphp B XXXXX B BBB XXXXX V----------------------GEAGV--R----VYA-------SGQPG my_fasta_file + ++ + + |++++ YPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 1N0U_A BAAAAAAAAAXXXXXXAAAAAAAXXXXXBBBXXXXBBBXXXXXXXXXXXX hhhcpphhhppphhphhhphcphhpchhcchphcchchhcchhpcphhph 201- 250.dddddddddddddddddddddd.....dd.dddd...ddddddd....: 251- 300.........:.........:.........:.........:.........: p hcpcchhhphchh hc cchc hchhc X XAAAAAAAAAAAA XX AAAA AAAAA G-----ARSDKLLYQAKLA---LD----EDLR-------------LKVVR my_fasta_file + ++ +++ + ++++ + + KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEK 1N0U_A XAAAAAXAAAAAAAAAAAAXXXXXAAAAAAAAXXXXXXXXXXXXXAAAAA cpcchppccpchcpchhcchhphhhhchhhchhphhhphcccchhhhhcc 251- 300.ddddd...:.........ddd..dddd.:..ddddddddddddd....: 301- 350.........:.........:.........:.........:.........: chhchchpc hhhhccphcp hcphcppchchp hhhhhcp AAAAAAAXX XAAAAAAAAA AAAAAAAAAAAA AAAAAAA KMFELRFGE--PAPARRSVEQ---LRGIEGSRVRAT-------YALLAKQ my_fasta_file ++ +| + | +++++++++ ++ + ++ + + +|+ LEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYR 1N0U_A AAAAAAAXXAAAAAAAAAAAAXXXAAAAAAAAAAAAXXXXXXXAAAAAAA hchhhcpcccchcpchhhchhhcchhhhhchhhchhhhhhhphhphphhc 301- 350.........dd........:.ddd.....:......ddddddd......: 351- 400.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file AEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFA 1N0U_A XXXXXXXXBBBBBBBBBXXXXXXBBBBBBBBBXBBBXXXBBBBBXXXXXX hcphhcphhcchphhhhcphchchchhhhhpchhhppccpchhhhpchhh 351- 400dddddddddddddddddddddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file GTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGN 1N0U_A XXXXXBBBBBXXBBBBBBXXBBBBBXBBBXXXBBBBBXXXXXXXXXBBBB pphcpppchchpphphhhpcccchhhchhpchhhhhpchhchhcchhhpp 401- 450dddddddddddddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: hphphppcchchcc hccpc phpphhphhp XXXXXXXXXXXXXX XXXXX AAAAAAAAAA ----YGVTWNGRRYDPKD-------WEKGD----TINQCISAAT------ my_fasta_file | ++++ + ++ ++ + +| ++ IIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLP 1N0U_A XXXXXXXXXXXXXXXXXXBBBBBBBXXXXXAAAAAAAAAAAAAAXXXXBB hhphhphcphhhcppphpppcphhphchhchphphhhphhhchcphpchh 451- 500dddd.....:........ddddddd....:dddd.....:....dddddd 501- 550.........:.........:.........:.........:.........: phhhphpchhhhh AAAAAAAAAAAAA --------------SCLYGVTEAAILA----------------------- my_fasta_file + |++ |+++ KLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGV 1N0U_A BBXXXXXBBBBBXXAAAAAAAAAAAAAXXXXXXBBBBXXXXXXBBBBXXX chhcphcchpcpchhhhphhpcppchhhhpppchhhchhhpchchchhph 501- 550dddddddddddddd.....:.......ddddddddddddddddddddddd 551- 600.........:.........:.........:.........:.........: hphhhh hphhh ppchhp hhh XXXXXX BBBBB XXXXXX AAA --------AGYAPA---IGFVH-------------TGKPLS------FVY my_fasta_file +|+++ + +++ + ++ + + PLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIE 1N0U_A XXXXBBBBXXXXXXBBBBBBBBXXAAAAAAAAXXXXXXXXXAAAAAAAAA hhchphhhhhhccphcpcpppphhpcphpchpchhhchchhccchphhhc 551- 600dddddddd.:....ddd..:..ddddddddddddd....:.dddddd..: 601- 650.........:.........:.........:.........:.........: c hhchh c hcphhhchhch A AAAAA X AAAAAAAAAAA D-----IADII-----------------------K----FDTVVPKAFEI my_fasta_file ++| + ++ | ++ NGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKA 1N0U_A AXXXXXAAAAAXBBBBXXXXXXXBBBBBXXXXXXXAAAAAAAAAAAAAAA pphhphccchchchchhhcchphchpchcchhhhphcppphphhhcppch 601- 650.ddddd...:.ddddddddddddddddddddddd.dddd:.........: 651- 700.........:.........:.........:.........:.........: hc cphpchc cchchhhcchhc AA XXXXXXX AAAAAAAAAAAA AR----------------------RNPGEPD------REVRLACRDIFR- my_fasta_file + + ++ +++ |+++ + VQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGG 1N0U_A AAXXXXXXXXXXXBBBBBBBBBXXXXXXXXXAAAAAAAAAAAAAAAAAAX hphhhchccphhhhhphhpccphhhpcchcphchphhchphhhchhhcpp 651- 700..dddddddddddddddddddddd.....:.dddddd..:.........d 701- 750.........:.........:.........:.........:.........: ppcphhchh AAAAAAAAA -------------------SSKTLAKLI---------------------- my_fasta_file + + + + GQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRG 1N0U_A XBBBBBBBBBBBBBBXXXXAAAAAAAAAXXXXBBBBBBXXXXBBBBBBBB pphhhphcchphhphhhhchchpchhhhhchphhcphhpphhphhpcccp 701- 750ddddddddddddddddddd:........dddddddddddddddddddddd 751- 800.........:.........:.........:.........:.........: hhhcchhh hpchph AAAAAAAA XXXXXX ------PLIEDVLA--------------------AGEIQP---------- my_fasta_file ++ | | +| QVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWS 1N0U_A XXXXXXAAAAAAAAXXXXXBBBBBBBBBBBXXXXXXXXXXAAAAAAAAAA phhpccpchpphhhphchhhhhpcphphppchcphpppphhhphhhchhp 751- 800dddddd...:....dddddddddddddddddddd.....:dddddddddd 801- 840.........:.........:.........:.........: hhhhcchphhhhhhhhp hpchphcpp XXXXXXXXXXXXXXXXX XXXXXXXXX --PAPPEDAQPVAIPLPVS----LGDAGHRSS-------- my_fasta_file +++|+| ++|++ + |++ +++ TLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 1N0U_A AAXXXXXXXXXXXXXXXXXAAAAXXXXXXXXXAAAAAAAA phppchhchppchpchhhhhccchphccchhphpchhcch 801- 840dd.......:.........dddd......:..dddddddd The seq2struc alignment: my_fasta_file ---> 1EEH_A align_len=437 ene=-72.00 identity=4.576659 hpc_err=33.409610 size_err=0.000000 ins=0 del=132 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhh phh hhccchphhh hph XBBXXX XXX XXXXXXBBBB BXX -MTWLPL----NPI-----------PLKDRVSMIF------------LQY my_fasta_file ++++++ + + + + ++ ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAV 1EEH_A XXXXXXXBBBBXXXAAAAAAAAAAAXXXXXXBBBBXXXXXXXXXXXXXXX hchppcphhhhphphpphphhchhhhcphphchhcpchphhphcchhchh 1- 50d......dddd...ddddddddddd....:.....dddddddddddd..: 51- 100.........:.........:.........:.........:.........: pphc h hcphhhh hccpp hcphhhh XBBB B XXXBBBB BBXXX XBBBBBX GQID---V-----IDGAFVL---IDKTG--------IRTHIPV------- my_fasta_file + + | |++++ ++| + ERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCR 1EEH_A XBBBXXXXAAAAAXXXBBBBXXXXXXXXAAAAAAAAXXXBBBXAAAAAAA cchppphpcchhhhhchhhhphphhhhhhphphhhchphchhpchchhhc 51- 100....ddd.ddddd......:ddd.....dddddddd...:...ddddddd 101- 150.........:.........:.........:.........:.........: pphhhhhhchppc hphhhhchhhp hpphhhhhpchphchhhppph XXXBBBBBBXXXX XXAAAAAAAAA XXXBBBBBXXXXXBBBBXXXX -GSVACIMLEPGTR---VSHAAVRLAAQ-VGTLLVWVGEAGVRVYASGQP my_fasta_file + + | + + |++ ++ +|++ +++ + + + EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE 1EEH_A AXXXXBBBBBXXXXAAAAAAAAAAAAAAXXXXBBBBBXXXXXXXXXXXXX chphhhhhhpppppcpphpphhpchhchhphphphppphphhhhhhhccc 101- 150d........:....ddd..:........d:.........:.........: 151- 200.........:.........:.........:.........:.........: pp hcpcchhhphchhhccchchchhcchhchchpchhhhccphcp XX XAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAA GG----ARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQ- my_fasta_file + ++| ++|+ + + ++++ ++| + ++| +++ +++|+ + CELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLR 1EEH_A XXBBBBBXXAAAAAXXXXXXXXBBBBXXXXXXXXXXXXXXAAAAAAAAAX hchhhhchpphphcpppphphhhhphhphpcchhcchhhphpphchhchc 151- 200..dddd...:.........:.........:.........:.........d 201- 250.........:.........:.........:.........:.........: hcphc ppchchphhhhhcph phphpp cc hc AAAAA AAAAAAAAAAAAAAX XXXXXX XX XX -LRGIE-----GSRVRATYALLAKQY----GVTWNG--RR----YD---- my_fasta_file + +++ ++| + || + + IYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWLRV 1EEH_A XXXXXXBBBBBXXXXXXXXXXXXXXXBBBBXXXXXXBBXXBBBBXXBBBB hhcphchhhhphcchhphhhcphccchhphphphpchhhphpppcphhch 201- 250d.....ddddd........:......dddd......dd.:dddd..dddd 251- 300.........:.........:.........:.........:.........: hcchccpc phpphhphhpphh hphpchhhhh hphh XXXXXXXX AAAAAAAAAAAAA AAAAAAAAAA XXXX -PKDWEKGD---TINQCISAATSCL----YGVTEAAILA----AGYA--- my_fasta_file + + + ++ | ++++++ ++ + + ++ + + KGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLP 1EEH_A BXXXXXXXXAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAXXXXXXXXBBB cpcchhphcchchppphphpphhhhhhhhchhphhchpphchhpphpphh 251- 300d........ddd.......:.....dddd:.........dddd....ddd 301- 350.........:.........:.........:.........:.........: hhhphhhppchhphhhchhch hchcphh hchhchhccphp XXBBBBBXXXXXXAAAAAAAA AXAAAAA AAAAAAAAXXXX ---PAIGFVHTGKPLSFVYDIADI-IKFDTVV------PKAFEIARRNPG my_fasta_file + ++ + + ++++++++ + ++++ + +++ ++ HRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA 1EEH_A BBBXXBBBBBXXXXXXAAAAAAAAXXXXXXXXBBBBBBXXXXXXXXXXXX hchchhhchpphchhpcpchpphpppchhhpphhhcpphhhhhppcpcph 301- 350ddd......:.........:....d....:..dddddd.:.........: 351- 400.........:.........:.........:.........:.........: chccchc hhhcchhcppcphh chhhhhcchhhhpchphhh XXXAAAA AAAAAAAAAAAAAA AAAAAAAAAAAXXXXXXXX EPDREVR------LACRDIFRSSKTLA---KLIPLIEDVLAAGEIQPPA- my_fasta_file ++ | + ++ +| + || ++ ++ + ++++++ DFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPR 1EEH_A XXXXXXXBBBBBBXXXAAAAAXXXXXXBBBXXXAAAAAAAAXXXXXXXXB chphhhchhppcphchhhhpccphphhhhchchhcppcphcphhchhhhc 351- 400.......dddddd......:.......ddd.........:.........d 401- 437.........:.........:.........:....... hhcchphhhhhh hhphpchphcpp XXXXXXXXXXXX XXXXXXXXXXXX ---PPEDAQPVAIPL----------PVSLGDAGHRSS my_fasta_file ++++ ++ | + ++ + ++ + VQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG 1EEH_A BBBXXXXXXXXXXXXAAAAAAAAAAAAAAAXAAAAXX hphpchhhhphhhhphcphcphcpcppchhchhcchp 401- 437ddd......:.....dddddddddd....:....... The seq2struc alignment: my_fasta_file ---> 1XWI_A align_len=333 ene=-106.00 identity=4.804805 hpc_err=43.543544 size_err=0.000000 ins=11 del=28 begin1=0 begin2=0 1- 50.........:.....iiii:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++++ + |+ +++|++ | | +|++ ++++++ + + AIVIERPNVKWSDVA----GLEGAKEALKEAVILPIKFPHLFTGKRTPWR 1XWI_A XXBBBXXXXXXXXXX XXAAAAAAAAAAAAAAAAXXXXXXXXXXXXX hhhhcchphchpchh phcphcchhcchhhhhhchhhhhppccphhc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...iiiii.:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +| |++++ + ++ ++| ++ + + ++ +| + +++ ++ GILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKWLGESE 1XWI_A BBBBBXXXXXXAAAAAAAAAAAX XXXBBBBBBXXXXXXXXXXXXA phhhhphhpppcphhhchhhpch pppphhphpppchhpchhpcpc 51- 100.........:.........:.........:.........:.........: 101- 150......ii.:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ |+ + |++ +++ + ++ + + ||+ + + + + + + KLVKNL--FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 1XWI_A AAAAAA AAAAAAXXXBBBBBBXXXXXXXXXXXXXXXAAAAAAAAAAAA chhcph hphhccpchphhhhcchcphhppcpcpcpchhcchcpchhhp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpph h phhpphhhphpchh AAAAAXXXXXXXXXXXXXXXXXXXAAAAA A AAAAAAAAAAAAAA LLAKQYGVTWNGRRYDPKDWEKGDTINQC--I----SAATSCLYGVTEAA my_fasta_file +++ + ++++++++ + +++| + + + + + ++ + MQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFK 1XWI_A AAXXXXXXXXBBBBBBBXXXXXXXAAAAAXXXBBBBXXXXXAAAAAAAAA hpphphcpcphhhhphpphhhhhcphhccchccchhhhhhchhhchhhhc 151- 200.........:.........:.........dd.dddd...:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhhhp hhhppchhphhhchhchhchcphhhchhchhc AAAXXXXXXBB BBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA ILAAGYAPAIG------FVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR- my_fasta_file + ++++ ++ + |+ +++ + + +++ + +| LHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 1XWI_A AAAXXXXXXXXAAAAAAAAAXXXXXXAAAAAAAAAAAAXAAAAAAAAXXB hhhpppppphpchchcchpccpcphpphchphhhcchhhphhcchpphph 201- 250.........:.dddddd..:.........:.........:.........d 251- 300.........:.........:.........:.........:.........: cphpchc cchchhhcchhcppcphhchhhhhcchh XXXXXXX AAAAAAAAAAAAAAAAAAAAAAAAAAAA -------RNPGEPD--------REVRLACRDIFRSSKTLAKLIPLIEDVL my_fasta_file +++ + + ++++ ++ + + + + +++ FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 1XWI_A BBBBBBBXXXXXXXBBBBBBBBXXXXXXXBBBXXXXXXXXXXXXXXXXXA hcchcphpchchphhhcchhphhphpchphhchphhchhpcchhchhhph 251- 300ddddddd..:....dddddddd.......:.........:.........: 301- 333.........:.........:.........:... hhpchphhhhhcchphhhhhhhhphpchphcpp AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++++ +++++ + + + + +++ SDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 1XWI_A AAAAAAAAXXXXXXXAAAAAAAAAAAAXXXXXX pchhcphpppchphpchchhchcchpcchppcp 301- 333.........:.........:.........:... The seq2struc alignment: my_fasta_file ---> 1R7R_A align_len=719 ene=118.00 identity=3.337969 hpc_err=20.166898 size_err=0.000000 ins=0 del=414 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhp h hhhccchphhhh php X BB XXXX X XXXXXXXBBBBB XXX -------M---TW----LPLN----P------IPLKDRVSMIFL--QYG- my_fasta_file + ++ +++ + +|+ + + + LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 1R7R_A XXXXXXXXBBBBBXXXXXXXXBBBBXAAAAAAXXXXXXXBBBBBXXXXXB hcpcpchpchhhcchhpccpphhphpphchcchphhcpcphhhcpccccc 1- 50ddddddd.ddd..dddd..:.dddd.dddddd.......:....dd...d 51- 100.........:.........:.........:.........:.........: phch hcphhhh hccpph cphhh hpphhhh BBBB XXXBBBB BBXXXX BBBBB XXXXBBB ---QIDV----IDGAFVL--------IDKTGI-RTHIP-----VGSVACI my_fasta_file + ++ +| + + ++ +|+ + +| | + AVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 1R7R_A BBBBBBBXXXXXXXBBBBXAAAAAAXXXXXXXBBBBBBXXXXXXXXXBBB hhhhhhpccphpccchchpchhcpphchchpchhphphhhchchpcchhh 51- 100ddd....dddd.......dddddddd...:..d.....ddddd......: 101- 150.........:.........:.........:.........:.........: hh chppchphhhh chhhp hpp hhhhh p BB BXXXXXXAAAA AAAAA XXX BBBBB X ML----EPGTRVSHAAV-RLAAQ--------VGT-LLVWV-G-------- my_fasta_file ++|+ + +| ++ + +| ||++ + LPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVV 1R7R_A BBXXXXXXXXXXXAAAAXAAAAAXXXXBBBBXXXBBBBBBXXBBBBBBBB hhhccphcphppphhchhhchhhhchhchhccpchhhhcpphchhchchh 101- 150..dddd...:.......d.:...dddddddd...d....:d.dddddddd 151- 200.........:.........:.........:.........:.........: chphchhh ppphpph XXXXBBBB XXXXXXX --EAGVRVYA---------------------------SGQPGGA------ my_fasta_file + ++|++ ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQI 1R7R_A BBXXXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAA cpchphhhhhhhcphhhhcpchhcccccccphpchphcchpphccphhph 151- 200dd.......:ddddddddddddddddddddddddddd..:....dddddd 201- 250.........:.........:.........:.........:.........: cpcchh hphchh hccchchchhcch AAAAAA AAAAAA XXAAAAAAAAAAA ---RSDKLL-YQAKLA----------------LDEDLRLKVVRKM----- my_fasta_file + ++|+ + ++| + |+ |+ + KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 1R7R_A AAAAAAAAAXAAAAAAXXXXXXXBBBBBXXXXXXAAAAAAAAAAAXXXBB cchhchhhchhhhhchhphchhcphhhhphhpppcphhhchhhpcpphhh 201- 250ddd......d......dddddddddddddddd.......:.....ddddd 251- 300.........:.........:.........:.........:.........: hchc hpch hhhccphcphc phcp AAAA AXXX AAAAAAAAAAA AAAA ----FELR--FGEP----APARRSVEQLR----------------GIEG- my_fasta_file ++++ ++++ + + +++|++ +| FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 1R7R_A BBBXAAAAXXXXXXAAAAAAAAAAAAAAAXXXBBBBBXXXXXXXXAAAAX hhhpphchhpchhpcpcpphcchhcchccphhhhhhhcchchhhhccccp 251- 300dddd....dd....dddd.:.........dddddddddddddddd....d 301- 350.........:.........:.........:.........:.........: pchchphhhhhcp AAAAAAAAAAAAA ----SRVRATYALLAKQ--------------------------------- my_fasta_file |++ + |+ + HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 1R7R_A XXXXAAAAAAAAAAAAAXXXXXBBBBBBBXXXXXXXXXXXXXXXXXBBBB hpchccchhpphhphhcphcpchhhhhhhhppchpphchhhcchpchccc 301- 350dddd.....:.......ddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: hp hphppcchchcc hccpc XX XXXXXXXXXXXX XXXXX ---YG----------VTWNGRRYDPKD-------WEKGD----------- my_fasta_file ++ ++ +++ | +| + VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 1R7R_A XXXXXAAAAAAAAAAXXXXXXXXXXXXAAAAAAAXXXXXAAAAAAAAAAA hchphhchppchchhphhpcphchhcchchcphhpcphphhphchhhhhp 351- 400ddd..dddddddddd....:.......ddddddd.....ddddddddddd 401- 450.........:.........:.........:.........:.........: phpphhphhp phhhph pchhhhh AAAAAAAAAA AAAAAA AAAAAAA --TINQCISAAT--------SCLYGV----TEAAILA------------- my_fasta_file + + + + ++ ++ + ++ + EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 1R7R_A AAAAAAAAAAAAXXXXXXXXAAAAAAXXXXAAAAAAAXXXXXXXXXXXXX chhhphhccchchhchcccphchchhpphhhphcchchhhpppphphhcc 401- 450dd.......:..dddddddd......dddd.......ddddddddddddd 451- 500.........:.........:.........:.........:.........: hphhhhhphhhppchhp hhhc hhchhc hc XXXXXXBBBBBXXXXXX AAAA AAAAAX AA --AGYAPAIGFVHTGKPLS-FVYD-IADIIK----FD------------- my_fasta_file + ++++ |++++ ++ + ++ TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 1R7R_A XXXXXXXXXXXXXXXXXXXAAAAAXAAAAAXAAAAAAXXXXXXXBBBBXX phhchhphphcchpphcchccchpchhphhhchhcchhchphphpcphhh 451- 500dd.......:.........d....d....:.dddd..ddddddddddddd 501- 550.........:.........:.........:.........:.........: phhhchhchhc c phpchc cchchhhcchhc AAAAAAAAAAA X XXXXXX AAAAAAAAAAAA -----TVVPKAFEIAR--------R-----NPGEPD--REVRLACRDIFR my_fasta_file +++++ + + + + | +++++++ YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 1R7R_A XXXXXAAAAAAAAAAAXXXBBBBBXAAAAAXXXXXXAAAAAAAAAAAAAA hphhphpcphhhchhhpchphphhphcphchhphhhpcpchphcchhcch 501- 550ddddd....:......dddddddd.ddddd......dd.:.........: 551- 600.........:.........:.........:.........:.........: ppcp hhchhhhhcchhh AAAA AAAAAAAAAAAAA ----------------SSKT-----LAKLIPLIEDVLA------------ my_fasta_file + + ++ + ++++++ RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 1R7R_A XXXBBBBBXXXXXXXXAAAAXXXXXAAAAAAAAAAAAAXXXXXBBBBXXX cphhhhhhhhcchcphhchcppphpcppphhcchhpphhpchcphppccp 551- 600dddddddddddddddd...:ddddd....:........dddddddddddd 601- 650.........:.........:.........:.........:.........: hpch phhhhhcc XXXX XXXXXXXX ----------------------AGEI----------QPPAPPED------ my_fasta_file ++ VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV 1R7R_A XXXXXXXXXXXXXXXBBBBBXXXXXXAAAAAAAAAAXXXXXXXXAAAAAA hhhhphppchchhchhhhchpchcphhhhhhhcccpchhhhchphccphh 601- 650dddddddddddddddddddddd....dddddddddd...:....dddddd 651- 700.........:.........:.........:.........:.........: hphhh hh h hhp XXXXX XX X XXX -AQPVA-----------------IP-------L--------------PVS my_fasta_file + + | ++ AKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN 1R7R_A AXXXXXAAAAAAAAAAAAAAAAAXXAAAAAAAXAAAAAAAAAAAAAAXXX hcchchchhhchppphpphchpchhpchhchhhccphcpchccccccppp 651- 700d.....ddddddddddddddddd..ddddddd.dddddddddddddd..: 701- 719.........:......... h pchphcp p X XXXXXXX X L-----GDAGHRS--S--- my_fasta_file + ++ PSAMEVEEDDPVPEIRRDH 1R7R_A XAAAAAXXXXXXXBBXAAA hphhchcccchhhchccch 701- 719.ddddd...:...dd.ddd The seq2struc alignment: my_fasta_file ---> 1KU2_B align_len=305 ene=-95.00 identity=4.590164 hpc_err=38.688526 size_err=0.000000 ins=65 del=0 begin1=0 begin2=0 1- 50iiiiiiiiii.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++ ||+ + + + ----------SDPVR-----QYL----HEI------GQVP-----LLTL- 1KU2_B XAAAA AAA AAA XXXX XXXA pchhc phh hch pphh hhph 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + +++ ++| ++ + ++ |++ + + + -----EEEIDLARKVEEGMEAIK-----KLSEA----TGLDQELIREVVR 1KU2_B AAAAAAAAAAAAAAAAAA AAAAA AXXXAAAAAAAAA ccchchhcchccphchhc chpch pphcpchhcchhc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++ + ++ + | +++ | ++++ | + ++ +++++ |+ +| AKILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEA 1KU2_B AAAAXXXXXXXXXXXXXXXXAAAAXXAAAAAAXXXAAAAAAAAAAAAAAA hchhpphchpchhphccchchcphcchcpchcphhcchcchhhhhccpch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iii..:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++++ +++++ | ++ ++ + +++ ++++| ++ ARQHLIEANLRLVVSIAKKYTGRG---LSFLDLIQEGNQGLIRAVEK--- 1KU2_B AAAAAAAXXAAAAAAAAAXXXXXX XXAAAAAAAAAAAAAAAAAA hcphhhchphchhhphhcchppcp hphhchhpcpppphhchhcc 151- 200.........:.........:.........:.........:.........: 201- 250i..iiiii.:....ii...:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + + + ++ + + + + + + ++ +++ +++ -FE-----YKRRFK--FSTYATW-WIRQAINRAIADQARTIRIPVHMVET 1KU2_B XX XXXXXX AAAAAAA AAAAAAAAAAXXXXXXXXXXAAAAAA hc hccchc hpphhph hhcphhpchhhcphcphchhhhhhcp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiii.:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +| + |+ + ++++ ++ + ++++ ++ ++++++++ INKLSRTARQLQQELGREPSYEE-----IAEAMGPGWDAKRVEETLKIAQ 1KU2_B AAAAAAAAAAAAAAAXXXXXAAA AAAAXXXXXXAAAAAAAAXXXX hpchpcphcphppchpcchphcc hhchhphphchcchccphchhp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +|+ EPVSL 1KU2_B XXXXX chhph 301- 305..... The seq2struc alignment: my_fasta_file ---> 1KU2_A align_len=305 ene=-94.00 identity=6.885246 hpc_err=39.672130 size_err=0.000000 ins=65 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +| + + + + + + | ++++ S--DPVRQYLHEIGQ-----VPL----LTL------EEEI-----DLAR- 1KU2_A X AAAAAAAAAAXX XXX XXA AAAA AAAA p chhcphhhchpp hhh hph ccch chhc 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ +++| + |++++|+ ++ + ++++ + -----KVEEGMEAIKKLSEATGL-----DQELI----REVVRAKILGTAR 1KU2_A AAAAAAAAAAAAAAAAXX XAAAA AAAAAAAAAXXXX chccphchhcchpchpph cpchh cchhchchhpphc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file |++ +| | |+| + +++ +|++ |+ ++ | +|++|++ ++| IQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEA 1KU2_A XXXXXXXXXXXXXXXAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAX hpchhphccchchcphcchcpchcphhcchcchhhhhccpchhcphhhch 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiii........:....iiiii:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +|+++ + + ++ + + ++ + +++ ++++| ++ NLRLV------VSIAKKYTGRGLS-----FLDLIQEGNQGLIRAVEK--- 1KU2_A XAAAA AAAAAXXXXXXXX AAAAAAAAAAAAAAAAAA phchh hphhcchppcphp hhchhpcpppphhchhcc 151- 200.........:.........:.........:.........:.........: 201- 250i..iiiii.:....ii...:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + + + ++ + + + + + + ++ +++ +++ -FE-----YKRRFK--FSTYATW-WIRQAINRAIADQARTIRIPVHMVET 1KU2_A XX XXXXXX AAAAAAA AAAAAAAAAAXXXXXXXXXXAAAAAA hc hccchc hpphhph hhcphhpchhhcphcphchhhhhhcp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiii.:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +| + |+ + ++++ ++ + ++++ ++ ++++++++ INKLSRTARQLQQELGREPSYEE-----IAEAMGPGWDAKRVEETLKIAQ 1KU2_A AAAAAAAAAAAAAAAXXXXXAAA AAAAAXXXXXAAAAAAAXXXXX hpchpcphcphppchpcchphcc hhchhphphchcchccphchhp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +|+ EPVSL 1KU2_A XXXXX chhph 301- 305..... The seq2struc alignment: my_fasta_file ---> 1KY4_D align_len=428 ene=-110.00 identity=4.672897 hpc_err=31.308413 size_err=0.000000 ins=0 del=123 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhh hccc hphhhhphpphchhcphhhhhc XBBXXXXXXX XXXX XBBBBBXXXBBBBXXXBBBBBB MTWLPLNPIP-----------LKDR---VSMIFLQYGQIDVIDGAFVLID my_fasta_file + + + + + |++ +++ ++ + ++ + + LPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCL 1KY4_D XXXXXXXXXXAAAAAAAAAAAXXXXAAAAAAAAAAXXXXXXXXXBBBBBX hhhchhchphhhhpcchhchhcpchhphhchcchhphpchhcphchhphh 1- 50.........:ddddddddddd....ddd.:.........:.........: 51- 100.........:.........:.........:.........:.........: cpp hcphhhhpphhhhhh chppchphhhhchhhp hpphhhhhp XXX XBBBBBXXXXBBBBB BXXXXXXAAAAAAAAA XXXBBBBBX KTG-----IRTHIPVGSVACIML-EPGTRVSHAAVRLAAQ-VGTLLVWVG my_fasta_file ++ + + + + + + ++++ + + | + | +++ |+| HMTVETAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKG 1KY4_D XXXAAAAAAAAAAAAXXXBBBBBXXXXXXXXAAAAAAAAAXXXXBBXXXX hhphcphhhhcphhhhphchchpphphhpppchhhhhhhchphhhhhhcp 51- 100...ddddd.:.........:...d.....:.........:d........: 101- 150.........:.........:.........:.........:.........: ch phch hhpp phpphcpcchhhp hchh XX XXBB BBXX XXXXXAAAAAAAA AAAA EA----------GVRV--YASG---QPGGARSDKLLYQ-AKLA------- my_fasta_file |+ + + + +||++ + + | ETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGIS 1KY4_D XXAAAAAAAAAAXXBBXXBBXXBBBBXXXAAAAAAAAAXAAAAXXXXXBB cpccchhhhhcpphhhccphhphhhccppchpphhhpchhphhpphcphp 101- 150..dddddddddd....dd.:..ddd....:........d:...ddddddd 151- 200.........:.........:.........:.........:.........: hccchchchhcchhchchpch hhhccphcphcphcppchchphhhh XXAAAAAAAAAAAAAAAAXXX AAAAAAAAAAAAAAAAAAAAAAAAA -LDEDLRLKVVRKMFELRFGEP---APARRSVEQLRGIEGSRVRATYALL my_fasta_file + ++ +| ++ +| ++ + + +|+|+ +++ + EETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIK 1KY4_D BXXAAAAAAAAAAAAXXXXXXXBBBXXXXAAAAAAAXAAAAAAAAAAAAA ccpppphhphhchhhpphhchhhhphpcphpcpchcphhphccphhcphc 151- 200d........:.........:..ddd....:.........:.........: 201- 250.........:.........:.........:.........:.........: hcphphphpp cchchcchccpcphpphhp hhpphhhp AAAXXXXXXX XXXXXXXXXXXXAAAAAAA AAAAAAAA AKQYGVTWNG-RRYDPKDWEKGDTINQCIS-----------AATSCLYG- my_fasta_file ++ ++ + ++ +++ ++ + + + + + + RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAM 1KY4_D AAAXXXXXXXBBBBBXXXAAAAAAAAAAAAXXXBBBBBXXXAAAAAAAAX chpchhhhpchhhhhphpchpcphhphhcphphchhhpchchhphhphhh 201- 250.........:d........:.........:ddddddddddd........d 251- 300.........:.........:.........:.........:.........: hpch hhhhhphhhhhphhh ppc AAAA AAAAXXXXXXBBBBB XXX -------VTEA------------------AILAAGYAPAIGFVH---TGK my_fasta_file || ++ + +++ + + + + EGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDV 1KY4_D XXXBBXXAAAAXXXXXBBBBXXXXXXXXXAAAAXXXXXXBBBBBXXXXXX cphchpphcchhccpphhhpppphhchhhpchhcphccchhhhphphhch 251- 300ddddddd..:.dddddddddddddddddd:.........:....ddd..: 301- 350.........:.........:.........:.........:.........: hhphhhchhc hh chcph hhchhchhccphpch XXXAAAAAAA AA XAAAA AAAAAAAAAXXXXXX PLSFVYDIAD--------II-----KFDTV-----VPKAFEIARRNPGEP my_fasta_file + + +++ + ++ + + ++ ++ |+| EIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHP 1KY4_D XXXAAAAAAAXXBBBBBBXXBBBBBXXXXXBBBBBXXXXXAAAAXXXXXX chchchhpcphhcchphchphcchhhcpphchhhhhcpchhphphhhphh 301- 350.........:dddddddd.:ddddd....:ddddd....:.........: 351- 400.........:.........:.........:.........:.........: ccchchhhcchhcppcphh chhhhhcchhhhpchph XAAAAAAAAAAAAAAAAAA AAAAAAAAAAAXXXXXX -DREVRLACRDIFRSSKTLA-------------KLIPLIEDVLAAGEIQP my_fasta_file ++++ + + + + + + |+ ++ +++ | SFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNV 1KY4_D AAAAAAAAAAAAAAAAAAAAXXXXXXXXBBBXXAAAAAAAAAAAXXXXXX phhhppphppphhhphchhphhcchhhphhhhhcchcchhhchhhpchph 351- 400d........:.........:ddddddddddddd......:.........: 401- 428.........:.........:........ hhhhcc hphhhhhhhhphpchphcpp XXXXXX XXXXXXXXXXXXXXXXXXXX PAPPED--AQPVAIPLPVSLGDAGHRSS my_fasta_file + +++ +++ + + + |+ + KLTKLTEKQAQYLGMPINGPFKPDHYRY 1KY4_D XXXXXXAAAAAAAXXXXXXXXXXXXXXX chpchpccphphhphhhpphhchchhch 401- 428......dd.:.........:........ The seq2struc alignment: my_fasta_file ---> 3FK1_A align_len=432 ene=-90.00 identity=7.175926 hpc_err=34.490740 size_err=0.000000 ins=5 del=127 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhp h hhhc cchphhhhphpph X BBXXXX X XXXX XXXBBBBBXXXBB -M--TWLPLN--P----IPLK-------------DRVSMIFLQYGQI--- my_fasta_file + | +| + + |+ +++ + + + + MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDV 3FK1_A XXBBBBXXXXBBXBBBBXXXXAAAAAAAAAAAAAXXXBBBBBXXXXXAAA hcphphphhhchcpphphhppcphppchhhhhhhhhpcphhpphhcpcch 1- 50d.dd.....:dd.dddd..:.ddddddddddddd.....:.......ddd 51- 100.........:.........:.........:.........:.........: chhcphhhhhccpphcphhh hpphhhhhhchppchphhhhc BBXXXBBBBBBXXXXBBBBB XXXXBBBBBBXXXXXXAAAAA ------DVIDGAFVLIDKTGIRTHIP---VGSVACIMLEPGTRVSHAAVR my_fasta_file ++ +| + + + +|++| +++ |++ || ++ +++ | | RHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGIAMR 3FK1_A AAAAAAAAAXXXBBBBXXXXXBBBBBXXXXXXXXXXXBBBBXXXXAAAAA chhhphhphhphphphphccpchchhpppphhhhcphhchhhpphphhhc 51- 100dddddd...:.........:......ddd:.........:.........: 101- 150.......iiiii.......:.........:.........:.........: hhhphpphhhhhpchphchhhppphpphcpcchhhphchhhccc hch AAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAA AAA LAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDED---LRL my_fasta_file + |+ ++ + + ++| + +++ +|++ | |++ + + | + SLAAALC-----LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQ 3FK1_A AAAAAXX XXXXXBBBBXXXXXXXXXXAAAAAAAAAXXXXBBBXXX phhhhhh hpppchhhppchchccchhphhhchhchpphchphhcp 101- 150.........:.........:.........:.........:....ddd..: 151- 200.........:.........:.........:.........:.........: chhcc hhchch pchhhhccphcph AAAAA AAAAAA XXXAAAAAAAAAA KVVRK---MFELRF-------GEPAPARRSVEQL---------------- my_fasta_file + ++ ++ + ++++ + + +++ ENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDL 3FK1_A XXXXXBBBXXXXXXBBBBBBBXXXAAAAAAAAAAXXXXXXXBBBBBBBBB cphhhhchppphpppphchcpphppphhphhhhphhhhhccphhchcpch 151- 200.....ddd.:....ddddddd........:....dddddddddddddddd 201- 250.........:.........:.........:.........:.........: cphcppchchphhhhhcphp hph ppcchchcch ccpcphp AAAAAAAAAAAAAAAAAAXX XXX XXXXXXXXXX XXXXAAA RGIEGSRVRATYALLAKQYG---VTW----NGRRYDPKDW---EKGDTIN my_fasta_file + ++++ ++ +++ ++ | +++ ++ + ||++ VSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASS 3FK1_A XXXAAAAAAAAAAAAXXXXXBBBXXXBBBBXXXXXXXXXXBBBXXXXAAA hpchhhchphphhcphphchcpphhpphhhcpppphpphpphhhcpchpp 201- 250.........:.........:ddd...dddd.........:ddd......: 251- 300.........:.........:.........:.........:.........: phhphhpphhh phpchhhhhhp hhhhhph AAAAAAAAAAA AAAAAAAAAXX XXXXBBB QCISAATSCLY------------------GVTEAAILAAG---YAPAIGF my_fasta_file ++ + |++ + + ++ ++ +++ ++ ASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYIS 3FK1_A AAAAAAAAAAAXXBBBBBXXXXXXXXXXXXAAAAAAAAXXBBBBXXXBBB hphhhhhhhhcppphchpphpcpphppchchhchhcchphphhhpcchhp 251- 300.........:.dddddddddddddddddd:.........:ddd......: 301- 350.........:.........:.........:.........:.........: hh ppch hphhhchhchhchcphhhchh chhccphpchccc BB XXXX XXAAAAAAAAAXAAAAAAAAA AAAAXXXXXXXAA VH---TGKP---LSFVYDIADIIKFDTVVPKAF----EIARRNPGEPDRE my_fasta_file + + + | |++|++++ |++ | + |+||+ CTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRL 3FK1_A BBXXXXXXXBBBXXXXAAAAAAAAAAXXXXXXXBBBBXXXXXXXXXXXAA hpcpchphhchchphhhchhhphhphhhhhcpppphcphhphchccpcch 301- 350..ddd....ddd.......:.........:...dddd..:.........: 351- 400.........:.........:.........:.........:.........: hchhhcchh cppcp hhchhhhhcchhhhpc AAAAAAAAA AAAAA AAAAAAAAAAAAAXXX VRLACRDIF------------------RSSKT--LAKLIPLIEDVLAAGE my_fasta_file + |+ +++ + ++ ++++ + ++ + ++ FAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVA 3FK1_A AAAAAAAAAXXXBBBBXXXBBBBBXXXXXXXXBBXXXXXAAAAAAAAXXX hhhhpchcchphchccphchhchphhcchphhchhphpchchhhhhphhh 351- 400.........dddddddddddddddddd..:..dd.....:.........: 401- 432.........:.........:.........:.. hphhh hhcchphhhhhhhhphpchphcpp XXXXX XXXXXXXXXXXXXXXXXXXXXXXX IQPPA---PPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ ++ ++ |+ ++++++ ++ LSDTPVTILDPKCTAKTFPDYFEQLARISQAA 3FK1_A XXXXXBBBBXXXXXXXXXXXAAAAAAAABBXX hpcphhphhchchphcphhchhcphhchpphh 401- 432.....ddd.:.........:.........:.. The seq2struc alignment: my_fasta_file ---> 2W2D_B align_len=423 ene=-111.00 identity=2.600473 hpc_err=37.588653 size_err=0.000000 ins=0 del=118 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphh XBBXXXXXXXXXXXXBBB ---------------MTWLPLNPIPLKDRVSMI----------------- my_fasta_file +++| ++++ + +| ALNLQCIKVNNWDLFFSPSEDNFTNDLNKGEEITSDTNIEAAEENISLDL 2W2D_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBXXXXXXXXXXXXXXAAA hhphphhchpphchhhphpccphppchpcpcchppcpphchhccphphch 1- 50ddddddddddddddd....:.........:...ddddddddddddddddd 51- 100.........:.........:.........:.........:.........: hhphpphchhcphhhhhccpphcphhhhpphhhhhhchppch BBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXX --------FLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRV my_fasta_file + + ++ ++ + +++++ + + +++++++ IQQYYLTFNFDNEPENISIENLSSDIIGQLELMPNIERFPNGKKYELDKY 2W2D_B AAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX hpphhhphphcpchcphphcphppchhpphchhhphcchhppcchchcch 51- 100dddddddd.:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: phhhhchh hphpphhhhhpchphchhhp pphpphcpcchhhp hc XAAAAAAA AAXXXBBBBBXXXXXBBBBX XXXXXXAAAAAAAA AA SHAAVRLA----AQVGTLLVWVGEAGVRVYAS-GQPGGARSDKLLYQ-AK my_fasta_file ++| + ++ ++ + + | ++++++ ++++ | TMFHYLRAQEFEHGKSRIALTNSVNEALLNPSRVYTFFSSDYVKKVNKAT 2W2D_B XAAAAAAAXXXXXXXXXXXBBBXXXXXXXXXXBBBXXXXAAAAAAAAXXX phhhhhchpchchpcpchhhppphpchhhphpchhphhppchhcchpchp 101- 150........dddd.......:.........:..d......:.......d.: 151- 200.........:.........:.........:.........:.........: hhhccchchchhcchhchch pchhhhcc phcphc AAXXAAAAAAAAAAAAAAAA XXXAAAAA AAAAAA LALDEDLRLKVVRKMFELRF---------------GEPAPARR-SVEQLR my_fasta_file +| +++++ + +++| + + ++ + ++ ++ +|+ EAAMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLY 2W2D_B XXXXAAAAAAAAAAAAAAAAXXXBBXXXXXXXXBBXXXAAAAAXXXXXXX chhhhhphhcphhhchpccppchpppcchhchphhhhhhphhhphpphhh 151- 200.........:.........:ddddddddddddddd....:...d.....: 201- 250.........:.........:.........:.........:.........: phcppchchphhhhhcphphphppcchchc chccpc p AAAAAAAAAAAAAAAAAXXXXXXXXXXXXX XXXXXX A GIEGSRVRATYALLAKQYGVTWNGRRYDPK---DWEKGD----------T my_fasta_file + ++ + +++ ++++ ++++++ ++ +++++ + KDDFVGALIFSGAVILLEFIPEIAIPVLGTFALVSYIANKVLTVQTIDNA 2W2D_B AAAAAAAAAAAXXXXXXXXXXXXXXXXXXXBBBXXXXXXAAAAAAAAAAA ccchhphhhhpphhhhhchhhchhhhhhpphhhhphhhpchhphpphcph 201- 250.........:.........:.........:ddd......dddddddddd: 251- 300.........:.........:.........:.........:.........: hpphhphhpphhhphpchhhhhh AAAAAAAAAAAAAAAAAAAAAAX INQCISAATSCLYGVTEAAILAA--------------------------- my_fasta_file ++ + ++ + + + LSKRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEATKAIIN 2W2D_B AAAAAAAAAAAAAAAAAAAAAAXAAAAAAAAAAAAAAAAAAAAAAAAAAA hpccpcchcchhchhhpphhhchppphchhccchcchhcpphchpchhhp 251- 300.........:.........:...ddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: phhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccch XXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAA -GYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREV my_fasta_file |++ + +++ ++ +++++ + ++ + ++ + + ++++++ YQYNQYTEEEKNNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMN 2W2D_B AAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA hphpphpccccpphphphcchppchpcphpchhhphpchhpphphphhhp 301- 350d........:.........:.........:.........:.........: 351- 400.........:.........:.........:.........:.........: c hhhcchhcppcphhchhhhhcchhhhpchphhh hhc A AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXX XXX R-LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPA------------PPE my_fasta_file ++++ + ++++ | + ++ ++ ++ ++ SMIPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDKVNNTLSTD 2W2D_B AXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAXXX phhhhphcchcchchphcchhhchhhcpcpphhpphcchccchppphppc 351- 400.d.......:.........:.........:.....dddddddddddd..: 401- 423.........:.........:... chphhhhhhhh phpchphcpp XXXXXXXXXXX XXXXXXXXXX DAQPVAIPLPV--SLGDAGHRSS my_fasta_file + ++ ++ ++ +| +++ IPFQLSKYVDNQRLLSTFTEYIK 2W2D_B XXXXXXXXXXXAAAAAAAAAAAX hhhphpchhcppchhpphpchhc 401- 423.........:.dd......:... The seq2struc alignment: my_fasta_file ---> 1SC6_B align_len=406 ene=-89.00 identity=5.911330 hpc_err=38.916257 size_err=0.000000 ins=2 del=101 begin1=0 begin2=0 1- 50.ii......:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++++ |+ |+++ | ++ ++ + + ++ + ++++ +| E--KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDA 1SC6_B X XXXXXBBBXXXXXAAAAAAAAAXXXXXBBBXXXXXXAAAAAAAAXXX c ccchchhhhcphhpchhcphchhphpphchhcphhcccphccphcch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhh hpch phchhhpp BBBBBXXXXXXAAAAAAAAAXXXBBBB BXXX XXBBBBXX CIMLEPGTRVSHAAVRLAAQVGTLLVW-----VGEA------GVRVYASG my_fasta_file +++ ++++|++|| +++ + + ++ ++ + HFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNA 1SC6_B XBBBBXXXXXXXAAAAAAXXXXXBBBBXXXXXXXXXAAAAAAXXXXBBXX hhhphcpcphhpcchhphhcchhhhphhhhpppphchchhhccphhhhph 51- 100.........:.........:.......ddddd....dddddd.......: 101- 150.........:.........:.........:.........:.........: phpphcpcchhhphchhhccc hchchhcch hchch pc XXXXXAAAAAAAAAAAAXXAA AAAAAAAAA AAAAA XX QPGGARSDKLLYQAKLALDED-LRLKVVRKM-------FELRF-----GE my_fasta_file + +||+++| ++ | |++ ++++ + ++ | + PFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKL 1SC6_B XXXXAAAAAAAAAAAAAAAAAXAAAAAAAAAXXXXXXXXXXXXBBBBBXX hhpppcphhchhhpchhhhhcphhchphchhcphppchhhpphchcpcch 101- 150.........:.........:.d.......:.ddddddd.:...ddddd.: 151- 200.........:.........:.........:.........:.........: hhhhccphcphcp hcppch chphhhhhcphphphp XAAAAAAAAAAAA AAAAAA AAAAAAAAAAXXXXXX PAPARRSVEQLRG-------------IEGSRV--RATYALLAKQYGVTWN my_fasta_file + ++ + ++| ++ ++++ + + ++ GIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMS 1SC6_B XAAAAAAAAAAAAXXXBBBBBXXXXXXXXXXXBBXXXAAAAAAAXXBBBB phhphphhppphphhhcphphhhhhhchcpchhhpphpphphhpchhphp 151- 200.........:...ddddddddddddd...:..dd.....:.........: 201- 250.........:.........:.........:.........:.........: pcchchcchccpcphpphh phhpphhhphpchh XXXXXXXXXXXXXAAAAAA AAAAAAAAAAAAAA GRRYDPKDWEKGDTINQCI---------------SAATSCLYGVTEAA-- my_fasta_file ++++ +++ + ++++ |++|+ + + +++| DVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 1SC6_B XXXXXXXXXXXXXAAAAAAXXXXBBBBBXXXXXXXXAAAAAAAAAXXXBB chhphhhhcphppcphhphcchphhchpphhhphpcpphhchhhhhchhh 201- 250.........:.........ddddddddddddddd.....:........dd 251- 300.........:.........:.........:.........:.........: hhhhphhhhhph hhppchhphhhchhchhchcphhhch AAAXXXXXXBBB BBXXXXXXAAAAAAAAAXAAAAAAAA ----ILAAGYAPAIGF---VHTGKPLSFVYDIADIIKFDTVVPKA----- my_fasta_file +||++ + ++++ + + + |+ + ++ + +++ + SKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENI 1SC6_B BBBBXXXXXXXXXBBBXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXXXXX pchhhphhhchhhpchhpppchhpphhhchcphhhphhhpppppchpcph 251- 300dddd.....:......ddd:.........:.........:.....ddddd 301- 350.........:.........:.........:.........:.........: hchhccph pchccchchhhcchh cp AAAAAXXX XXXXAAAAAAAAAAA AA ------FEIARRNP--------GEPDREVRLACRDIF--RS--------- my_fasta_file ++|++ + ++++ + + ++| + GLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTAL 1SC6_B XXXXXXXXXXXXXXBBBBBBBBXXXXAAAAAAAAAAAXXXXBBBBBBBBB phchhpchhchpcpppphphhphhchphhhhppcchhhhhcpchphhphh 301- 350dddddd...:....dddddddd.......:.......dd:.ddddddddd 351- 400.........:.........:.........:.........:.........: pc phhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpc AA AAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXX SK--------TLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGD my_fasta_file | + | ++++ + +++++ ++++++ + + ++ + NKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTI 1SC6_B XXBBBBBBBBXXXAAAAAAAAAAAAXXXXBBBBBBXXAAAAAAAAXXXXB pchhhcpphphhhphhppphphphhhhchchccchhcchhphhchhhpph 351- 400..dddddddd.........:.........:.........:.........: 401- 406...... hphcpp XXXXXX AGHRSS my_fasta_file ++++++ RARLLY 1SC6_B BBBBBB chchhh 401- 406...... The seq2struc alignment: my_fasta_file ---> 1Y11_A align_len=364 ene=-132.00 identity=8.241758 hpc_err=40.659341 size_err=0.000000 ins=0 del=59 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphh hhccchphhhhphpphchhcphhhhhccpphcphh XBBXXXXXX XXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBB MTWLPLNPI------PLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHI my_fasta_file + |+++++ +++ + ++++++ +++ | + + + ++ DDLLGDLGGTARAERAKLVEWLLEQGITPDEIRATNPPLLLATRHLVGDD 1Y11_A XXXXXXXXXAAAAAAAAAAAAAAAXXXXAAAAAXXXXXXXAAAAXXXXXX cchhpchppphchcchchhchhhcpphphcchchpphhhhhhpchhhpcc 1- 50.........dddddd....:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhpphhhhhhchppchphhhhchhhphpphhhhhpchphch hh BXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBB BB PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRV-------YA my_fasta_file +++++|++ +|++ ++++ +| +++||+ +|+++ |+|+ + GTYVSAREISENYGVDLELLQRVQRAVGLARVDDPDAVVHMRADGEAAAR 1Y11_A XXXXXXXAAAAAAXXXAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAXX pphhphcchpcphphchchhpchpchhphhchcchchhhhhchcpchhhc 51- 100.........:.........:.........:.........:.ddddddd.: 101- 150.........:.........:.........:.........:.........: p pphpphcpcchhhphchhhccchchchhcchhc hchpch X XXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAA AAAXXX S----GQPGGARSDKLLYQAKLALDEDLRLKVVRKMFE--LRFGEP---- my_fasta_file + +++ ++| + +++ + +++ ++ | | |++ AQRFVELGLNPDQVVLVVRVLAEGLSHAAEAMRYTALEAIMRPGATELDI 1Y11_A XAAAAAXXXXAAAAAAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXXAAAA hpchhchphphcphhhhhchhhcphphhhchhchphhchhhchphpchch 101- 150.dddd....:.........:.........:........dd......dddd 151- 200.........:.........:.........:.........:.........: hhhccphcphcphcppchchphhhhhcphphphppcc hchcchcc AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX XXXXXXXX APARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRR-----YDPKDWEK my_fasta_file |++ + + +++ ++ + ++ ++ + + ++ +++ + AKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGA 1Y11_A AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAXXXXXXXX hcppphhhpphhhhhphhhpchhhhphchhhcpchhphpcchhpchhhph 151- 200.........:.........:.........:.......ddddd.......: 201- 250.........:.........:.........:.........:.........: pcphpp hhphhpphhhphpchhhhhhphhhh hphhh XXAAAA AAAAAAAAAAAAAAAAAAAXXXXXX BBBBB ----------GDTINQ---CISAATSCLYGVTEAAILAAGYAPA-IGFVH my_fasta_file + ++ + +++++ | |++++ ++ | +++ RQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPPVWFIKTI 1Y11_A BBBBBBBBBBXXAAAAXXXXXAAAAAAAAAAAAAAAXXXXXXXXBBBBBB cphphhhhchhphpphpchhphcchphhhpchhphhcchphhhhhhhcph 201- 250dddddddddd......ddd:.........:.........:....d....: 251- 300.........:.........:.........:.........:.........: pp chhphhhchhchhchcphhhchhchhc cphpc XX XXXXAAAAAAAAAXAAAAAAAAAAAAA XXXXX TG----KPLSFVYDIADIIKFDTVVPKAFEIAR------------RNPGE my_fasta_file + + + | + ||+ ++ | |++ + GDAVMLVCPDPAPLLDTVLKLVEVVDTDNNFPRLRAGVASGMAVSRAGDW 1Y11_A XXBBBBBBXXAAAAAAAAAAAAAAAAAXXXXXXBBBBBBBBBBBBBXXBB pchhhhhhhchhhhhcphhchhchhcpcpphhchchphhpphhhpchpch 251- 300..dddd...:.........:.........:...dddddddddddd....: 301- 350.........:.........:.........:.........:.........: hccchchhhcchhcppcph hchhhhhcchhhhpchphhhhhcchphhhh XXAAAAAAAAAAAAAAAAA AAAAAAAAAAAAXXXXXXXXXXXXXXXXXX PDREVRLACRDIFRSSKTL-AKLIPLIEDVLAAGEIQPPAPPEDAQPVAI my_fasta_file +| |+|+++++ + + ++ +|+ ++|+| + + +++++++ + FGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLR 1Y11_A BBAAAAAAAAAAAAXXXXXBBBBAAAAAAAXXXXXXXXXBBBBBBBBXXX hpphhphhpchpphhchphhhhhcphcchhpchhchcphphphhphcchc 301- 350.........:.........d.........:.........:.........: 351- 364.........:.... hhhhphpchphcpp XXXXXXXXXXXXXX PLPVSLGDAGHRSS my_fasta_file + ++ + | GIRGDVRLFRVRRG 1Y11_A XXXXXBBBBBBBXX phcpchchhchccp 351- 364.........:.... The seq2struc alignment: my_fasta_file ---> 2BVN_A align_len=390 ene=-39.00 identity=6.923077 hpc_err=36.666667 size_err=0.000000 ins=5 del=85 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphh hhccchphhhhphpphch X BBXXXXXX XXXXXXBBBBBXXXBBBB -M-----TWLPLNPI----------------PLKDRVSMIFLQYGQIDV- my_fasta_file | + + ++++| +++ + + + KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKAR 2BVN_A XXBBBBBBBXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXXXXXXBBBBBX chhhphpphphhchpcpphphhhpphhhcphpphhchhcphcphhccchc 1- 50d.ddddd..:.....dddddddddddddddd........:.........d 51- 100.........:.........:.........:.........:.........: hcphhhhhccpphcph hhhpphhhhhhchppchphhhhchhhp XXXBBBBBBXXXXBBB BBXXXXBBBBBBXXXXXXAAAAAAAAA IDGAFVLIDKTGIRTH-------IPVGSVACIMLEPGTRVSHAAVRLAAQ my_fasta_file ++ +++ + + ++|+ + + ++| +++ +| + || GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 2BVN_A XXXBBBBBBXXXXXXXAAAAAAAAXXXXXBBBBBBXXXXXXAAAAAAAAA phphppphhchcphpchhhhhchhphhchhcphhpphhphcphhhhhhhp 51- 100.........:......ddddddd......:.........:.........: 101- 150...iii...:.........:.........:......ii.:.........: hpphhhhhpchphchhhppphpphcpcchhhphchhhccchchchhcchh XXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAA VGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMF my_fasta_file +|+ + + + ++++ ++++|+++++ + ++| | ++ DGP---MPQTREHILLGRQVGVPYIIVFLNKCDMVD--DEELLELVEMEV 2BVN_A AAA AXXXXBBBBBBXXXXXXXAAAAAAAAAAAA AAAAAXXXXXXX cph hhppcchhhhpcphphhhhhhhhpchchhc ccchhchhchch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: chchpchhhhccphcphcphcppchchphhhhhcphphphppcc hch AAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX XXX ELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRR---YDP my_fasta_file ++ + +++ ||+++ + + + +||+ ++++ +++ RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 2BVN_A XXBBBXXAAAAAXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBXXX cchhpphchhpccphhhcpphhchhcpchchchchhchhphhcphhhchc 151- 200.........:.........:.........:.........:....ddd..: 201- 250.........:.........:.........:.........:.........: cch ccpc php phhph hpphhhphpchhh XXX XXXX AAA AAAAA AAAAAAAAAAAAA ----KDW-------EKGD---TIN-----QCISA---ATSCLYGVTEAAI my_fasta_file |+ + + | + +|++ ++ +++ +++ RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 2BVN_A BBBBXXXBBBBBBBXXXXBBBXXXBBBBBXXXXXBBBBBBBBBBXXBBBX chhcchhhhhhcchhphppcpphhppchccphhchpcchchhphccppcp 201- 250dddd...ddddddd....ddd...ddddd:....ddd..:.........: 251- 300.........:.........:.........:.........:.........: hhhphhhhhphhhppchhphhhch hchhc hcphhh AAXXXXXXBBBBBXXXXXXAAAAA AAAAX AAAAAA LAAGYAPAIGFVHTGKPLSFVYDI---ADIIK------------FDTVVP my_fasta_file + +| + + + | + +|++ ++ + ++ TCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTK 2BVN_A BBBXXXBBBBBBBXXXXXXXXXXXBBBXXXXXBBBBBBBBBBBBXXXXXX phpphchhcchhccpchpcphphhhcphcccchccpphhhchpphchhpc 251- 300.........:.........:....ddd..:..dddddddddddd.....: 301- 350.........:.........:.........:.........:.........: chhch hccph pc hccchc hhhcchhcppcphhchh AAAAA AAXXX XX XXAAAA AAAAAAAAAAAAAAAAA KAFEI--ARRNP----GE--------PDREVR-LACRDIFRSSKTLAKLI my_fasta_file +++| + + ++ + ++ ++ + + + + FESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPG 2BVN_A XXXXXBBXXXXXBBBBXXBBBBBBBBXXXXXXBBXXXXBBBBBBBBBBBB hcpchhhhpcccppchphhhcphchphhhcppchppphchhcphchhhhp 301- 350.....dd..:..dddd..dddddddd...:..d......:.........: 351- 390.........:.........:.........:.........: hhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++| +| + ++ + ++++ + ++++++| |+ ++++| DNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 2BVN_A BBXXXXBBBBBBXXBBBBBBBBBBBXXXXBBBBBBAAAAX cphchhhphhhhhhhccphchhhccppcphphphhhchhp 351- 390.........:.........:.........:.........: The seq2struc alignment: my_fasta_file ---> 1EFU_C align_len=390 ene=-39.00 identity=6.153846 hpc_err=39.230770 size_err=0.000000 ins=5 del=85 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhph hhhccchphhhhphpphch hcphhhhhc X BBXXXXX XXXXXXXBBBBBXXXBBBB XXXBBBBBB -M------TWLPLNP------IPLKDRVSMIFLQYGQIDV-IDGAFVLID my_fasta_file ++ +++ + ++ + +++ + |+ + + +++ KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKAR 1EFU_C XXBBBBBBBBXXXXXAAAAAAAAAAAAAAAAXXXXXBBBBXXXXBBBBBB chhhphpphphhchpcpphphhhpphhhcphpphhchhcphcphhccchc 1- 50d.dddddd.:.....dddddd........:.........:d........: 51- 100.........:.........:.........:.........:....iii..: cpp hcphhhhpphhhhhhchppchphhhhchhhphpphhhhhp XXX XBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBX KTG-------IRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVG my_fasta_file + | ++ ++ + ++ +++ +++ + +++ |+ GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAI---LVV 1EFU_C XXXAAAAAAAAAXXXXXXXBBBBBBBXXXXXXXXAAAAAAAAAA XXX phphppphhchcphpchhhhhchhphhchhcphhpphhphcphh hhh 51- 100...ddddddd.........:.........:.........:.........: 101- 150.........:.........:.......ii:.........:.........: chphchhhppphpphcpcchhhphchhhccchchchhcchhchchpchhh XXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAA EAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAP my_fasta_file +| + +++ + + + + +++ | +++| +| + AATDGPMPQTREHILLGRQVGVPYIIV--FLNKCDMVDDEELLELVEMEV 1EFU_C XXBBBBBBXXXXXXXAAAAAAAAAAAA AAAAAXXXXXXXXXBBBXXAA hhpcphhhppcchhhhpcphphhhhhh hhpchchhcccchhchhchch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hccphcphcphcppchchphhhhhcphphphppcc hch cchcc AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX XXX XXXXX ARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRR---YDP---KDWEK- my_fasta_file + +++ +++++ + ++ +||+|+ + | + + ++ |+ RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 1EFU_C AAAXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBXXXBBBXXXXXB cchhpphchhpccphhhcpphhchhcpchchchchhchhphhcphhhchc 151- 200.........:.........:.........:.....ddd.:.ddd.....d 201- 250.........:.........:.........:.........:.........: pcph pph hphhp phhhphpchhhhhhphhhhhph XXAA AAA AAAAA AAAAAAAAAAAAAXXXXXXBBB -----GDTI---NQC-----ISAAT---SCLYGVTEAAILAAGYAPAIGF my_fasta_file +++ + + | ++ +++ ++ + | ++++ + RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 1EFU_C BBBBBXXXXBBBXXXBBBBBXXXXXBBBBXXXBBBXXBBBXBBBXXXBBB chhcchhhhhhcchhphppcpphhppchccphhchpcchchhphccppcp 201- 250ddddd....ddd...ddddd.....ddd.:.........:.........: 251- 300.........:.........:.........:.........:.........: hhppchhphhhchhc hhchcp hhhchhchhcc ph BBXXXXXXAAAAAAA AAXAAA AAAAAAAAAAX XX VHTGKPLSFVYDIAD---IIKFDT-----------VVPKAFEIARR--NP my_fasta_file + ||++ +++ +++ ++++++ ++ +|+++++ + TCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTK 1EFU_C BBXXXXXXXXXXXXXBBBXXXXXXBBBBBBBBBBBXXXXXXXXXXXBBXX phpphchhcchhccpchpcphphhhcphcccchccpphhhchpphchhpc 251- 300.........:.....ddd.:....ddddddddddd....:......dd.: 301- 350.........:.........:.........:.........:.........: pch cc chchhh cchh cppcphhchh XXX XA AAAAAA AAAA AAAAAAAAAA GEP----DR--------EVRLAC--RDIF-----------RSSKTLAKLI my_fasta_file +|+ + + +++ + | + + + + FESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPG 1EFU_C XXXBBBBXXBBBBBBBBXXXXXXBBXXXXBBBBBBBBBBBBBXXXXXBBB hcpchhhhpcccppchphhhcphchphhhcppchppphchhcphchhhhp 301- 350...dddd..dddddddd..:...dd....ddddddddddd.........: 351- 390.........:.........:.........:.........: hhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++| +| + ++ + ++++ + ++++++| |+ ++++| DNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 1EFU_C BBBXXBBBBBBBBBBBXXXBBBBBXXXXBBBBBBBAAAAX cphchhhphhhhhhhccphchhhccppcphphphhhchhp 351- 390.........:.........:.........:.........: The seq2struc alignment: my_fasta_file ---> 1XI8_A align_len=391 ene=-100.00 identity=3.836317 hpc_err=40.920717 size_err=0.000000 ins=0 del=86 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhphhhhccchphhhhphpphchhcphhhhhccpphcphh XBBX XXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBB MTWL------PLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHI my_fasta_file +++ +++ + + +++ ++ + + ++++ + + ++++ RLTPYEEALSIVLNDLKEIEEVEYVPLKDALGRVLAEDIVASYDLPPFDR 1XI8_A XXXXAAAAAAAAAAXXXXXXXBBBBBXXXXXXXXXXXXBBXXXXXXXXXX chphhcchhphhhpchcchcchchhhhcchhpchhhcchhhphchhhhcc 1- 50....dddddd.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpph BXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXX PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGA my_fasta_file + + + |+ + + + ++ ++ ++ ++ ++ + ++++++ AAVDGYAVRAEDTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLT 1XI8_A XXXXXXBBBXXXXXXXAAAAAAAAAAXXXBBBBBXXXBBBBBBXXXXAAA hhhcphhhchccphchcchphhchchhcchhhpcphpcchhhpchhchhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: cpcchhhp hc hhhccchchchhcchhch AAAAAAAA AA AAXXAAAAAAAAAAAAAA RSDKLLYQ-AK-------LALDEDLRLKVVRKMFEL-------------- my_fasta_file + +++ |+ +++ + +| |++++ GGKIPRGANAVIMQEMVKREGSKIYVLRPVAPGQNISFAGEDVKKGDIAL 1XI8_A AAAAAAAAXXXBBBBBBBXXXXAAAAAAAAAAAAAAXXBBBBXXXXXXXB ppchhcphphhhhpchhcccppchhhhchhhhppphphhpcchccpchhh 101- 150........d:.ddddddd.:.........:......dddddddddddddd 151- 200.........:.........:.........:.........:.........: ch pchhh hc cphcphcphcppchchphhhhhcphphphpp AA XXXAA AA AAAAAAAAAAAAAAAAAAAAAAAAXXXXXXX --RF--GEPAP---AR---RSVEQLRGIEGSRVRATYALLAKQYGVTWNG my_fasta_file + +++ ++ | |++++ + + ++ ++| + ++++ KKGTILRPQDLALLKALGIRKVPVKVKPKVGIIITGSELVQEPSLEEFEK 1XI8_A BXXXBBXXXXXBBBXXBBBXXXXAAAAAAAAAAXAAAAAAAAAXXXXXXX ccpphhchpchhhhchhphcchhhchchchphhhpppchhpchphcchcc 151- 200dd..dd...:.ddd..ddd:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: cch chcchccpcphpphhphhpphhhphpchhhhhhphhhhhp XXX XXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBB ------RRY-DPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIG my_fasta_file ++++ | ++ +++ + ++++ | ++|+ + + + GKIVDTNSIMLSALVERYFGEPILYGVVPDNEDLIRSALEKAKRECDLVL 1XI8_A BBBBBBXXXBBXXXXXBBBBBBBBBXXBBBBXXXXXXXXAAAAXXXBBBB pchhcppphhhphhhcchhpchhhhphhhcpcchhcphhcchccchchhh 201- 250dddddd...d.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhhppchhphhhchhchhchcphhhchhchh ccphpchccchchh BBBXXXXXXAAAAAAAAAXAAAAAAAAAAAA AXXXXXXXAAAAAA FVHTGKPLSFVYDIADIIKFDTVVPKAFEIA-----RRNPGEPDREVRLA my_fasta_file ++ + + +|+ ++ ++ +++++++ + |++ + ++++ + + ITGGSAFGDMDYAHKFVNLLFHGTTIRPGRPIGYGERVFVMSGYPVAVFT 1XI8_A BBXXXXBBXXXXBBBBBBXAAAAAXXXXXXXBBBBBBBBBXXXXAAAAAA hpppphhpchchhhchhphhhhppphchpchhphpcchhhhpphhhhhhp 251- 300.........:.........:.........:.ddddd...:.........: 301- 350.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchh hhpchphhhhh cc AAAAAAAAAAAAAAAAAAAAAA AXXXXXXXXXX XX CRDIFRSSKTLAKLIPLIEDVL-----AAGEIQPPAPP--------ED-- my_fasta_file +++ |+ +++ ++ + +++ |+ ++ + + ++ QFHLFVKHALAKLVGAKDYEVKVRAVLEDDVPSQLGRYEFVRVMYRDGKA 1XI8_A AAAAAAAAAAAAAAXXXXXXXXBBBBBXXXXXXXXXXXBBBBBBBBXXBB phhhhhchhhhchhphcchchchchhhccchhpphpchchhchhhccpch 301- 350.........:.........:..ddddd..:........dddddddd..dd 351- 391.........:.........:.........:.........:. hphhh hhh hhphpchphcp p XXXXX XXX XXXXXXXXXXX X ---AQPVA--------IPL----PVSLGDAGHRS------S my_fasta_file + +++ ++ |+ + + KVIKKKGSGIISSLVQSNAYLVVPEDVEGYRRGEEVWVTLY 1XI8_A BBBXXXXXAAAAAAAAXXXBBBBXXXXXXXXXXXBBBBBBX chhcccppphhpphhppphhhhhhcchcphccpcchhhphh 351- 391ddd.....dddddddd...dddd......:....dddddd. The seq2struc alignment: my_fasta_file ---> 1AYE_A align_len=401 ene=-105.00 identity=3.990025 hpc_err=37.157106 size_err=0.000000 ins=0 del=96 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhh phhh hccchphhhhphpphchhcphh XBBXXX XXXX XXXXXBBBBBXXXBBBBXXXBB -MTWLPL-----NPIP------------LKDRVSMIFLQYGQIDVIDGAF my_fasta_file +| ++ +|++ + +++++ + ++++ + LETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVR 1AYE_A XXXXXXXBBBBBXXXXAAAAAAAAAAAAXXXXXXBBBBXXXXXXXXBBBB hcphhpcphhchhhppccphcphhphchpchhphchhcphpphpcphhhc 1- 50d......ddddd....dddddddddddd.:.........:.........: 51- 100.........:.........:.........:.........:.........: h hhc cpphcphhhhp phhhhh B BBB XXXXBBBBBXX XXBBBB V-LID----------KTGIRTHIPVG------------------SVACIM my_fasta_file | + + + ++++ VPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNF 1AYE_A BXXXXAAAAAAAAAAXXXXBBBBBXXAAAAAAAAAAAAAAAAAAXXXXXX hhhhphphhchhhcppphhhphhhcchphhhcccpcchhhpcccccppph 51- 100.d...dddddddddd....:......dddddddddddddddddd.....: 101- 150.........:.........:.........:.........:.........: hchppch phhhhchhhp hpp hhhhhpchph chhh BBXXXXX XAAAAAAAAA XXX BBBBBXXXXX BBBB LEPGTRV----SHAAVRLAAQ-VGT---LLVWVGEAGV---RVYA----- my_fasta_file +++++++ |++ + | | |+ + ++ ++ + + + NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD 1AYE_A XXXXXXXAAAAAAAAAAAAAAXXXXBBBBBBBBXXXXXBBBBBBBXXXXX phphhhphcchppchcphhhchhphhpchphppphcpchhphhchppppc 101- 150.......dddd........:.d...ddd.:........ddd....ddddd 151- 200.........:.........:.........:.........:.........: p pphpphcpcchhhphchhhccch chchhcchhchc X XXXXXXAAAAAAAAAAAAXXAAA AAAAAAAAAAAA -S------GQPGGARSDKLLYQAKLALDEDL--RLKVVRKMFELR----- my_fasta_file + |+ + +++ + + ++++ + +++ + KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLL 1AYE_A XXBBBBBBXXXXXXAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAXBBBBB chhhhhchphhhcchhpphphhhphpchhpchpcchphpphhchhchhhh 151- 200d.dddddd.:.........:.........:.dd......:.....ddddd 201- 250.........:.........:.........:.........:.........: hpchhhhccphcp hcphcppchchphhhhhcphphphppcchchcc AXXXAAAAAAAAA AAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX FGEPAPARRSVEQ----LRGIEGSRVRATYALLAKQYGVTWNGRRYDPKD my_fasta_file + + ++++++ | + ++ ++ + ++ + + PVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASS 1AYE_A XXXXAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX hhpphcphhhpppcpchhccpcpchppphhhphchpcphchphpphphpp 201- 250.........:...dddd..:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hccpcphpphhphhpphhhphpchhhhhhp hhhhhphhhppc XXXXXAAAAAAAAAAAAAAAAAAAAAAAXX XXXXBBBBBXXX WEKGDTINQCISAATSCLYGVTEAAILAAG--------YAPAIGFVHTGK my_fasta_file +++ | + ++++ ++ + + ++ + + ++ + +|+ NPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGY 1AYE_A XXXXXXXXXXXXXXXAAAAAAAAAAAAAXXBBBBBBBBBXXXBBBBXXXX phhpcphhphphppchchcphhchhcphpchchhhhhhphpphhhhhhph 251- 300.........:.........:.........:dddddddd.:.........: 301- 350.........:.........:.........:.........:.........: hhphhhchhchhchcphhhchhchhccphp chccchchhhcchhcppcp XXXAAAAAAAAAXAAAAAAAAAAAAAXXXX XXXAAAAAAAAAAAAAAAA PLSFVYDIADIIKFDTVVPKAFEIARRNPG-EPDREVRLACRDIFRSSKT my_fasta_file + + +| + + + + + + + ++ +++++++ ++ ++ + + KCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWS 1AYE_A XXXXXXXAAAAAAAAAAAAAAAAAAAXXXXBBBBAAAAXXXXXXXAAAAA chpchcchcchpchhpchhpphcphhppchchphhhphhhphpppphchp 301- 350.........:.........:.........:d........:.........: 351- 400.........:.........:.........:.........:.........: hhchhh hhcchhhhpchphhhhhcchphhhhhhhhphpchphcp AAAAAA AAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAKLIP------LIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRS my_fasta_file +++|+ |+ ++ +++ + ++ + | ++ +|+ + + +++ YDYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHVRDHP 1AYE_A AAXXXXBBBBBBBXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAXX hchphchphhhchccppchphhhhhcphhhphccphhphchhhchhcchh 351- 400......dddddd.......:.........:.........:.........: 401- 401. p X S my_fasta_file + Y 1AYE_A X h 401- 401. The seq2struc alignment: my_fasta_file ---> 3G7T_A align_len=397 ene=-15.00 identity=4.785894 hpc_err=37.531486 size_err=0.000000 ins=0 del=92 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hhhccchphhhh phpphch hcp hhhhh XBBXXXXX XXXXXXXBBBBB XXXBBBB XXX BBBBB --MTWLPLNP-IPLKDRVSMIFL---QYGQIDV----IDG-----AFVLI my_fasta_file ++ ++ + +++ + ++ + + ++ +++ MRCVGIGNRDFVEGLSGATWVDVVLEHGSCVTTMAKDKPTLDIELLKTEV 3G7T_A XXXBBXXXXXBBBXXXXBBBBBBXXXXXXBBBBXXXXXXXBBBBBBBBBB hchhphppcchhcphpphphhchhhchpphhpphhccchphchchhcpch 1- 50dd.......:d........:...ddd...:...dddd..:ddddd....: 51- 100.........:.........:.........:.........:.........: ccp phcphhhhpphhhhhhchppchphhhhchhhphp phhhhh BXX XXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXX XBBBBB DKT--GIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVG---TLLVWV-- my_fasta_file + ++ + |+ +++++++ +++ + +|+ ++++ ++ + TNPAVLRKLCIEAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRG 3G7T_A BXXBBXXBBBBBBBBBBBBBBBXXXXXXXXXXXXXXXXXBBBBBBBBBXX pphhhhcchhhchchpppppcpchhpppchphhccpchphhhccphhccp 51- 100...dd....:.........:.........:.........ddd......dd 101- 150.........:.........:.........:.........:.........: pchph chhhppphp phcpc XXXXX BBBBXXXXX XXAAA ----GEAGV----------------RVYASGQPG--------GARSD--- my_fasta_file + ++ ++ + ++ + | WGNGCGLFGKGSLLTCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQ 3G7T_A XXXXXXXXXBBBBBBBBBBBBBBBBBBBBXXXXXBBBBBBBBXXXXXBBB hppphphhpcpphhphhchchhpchcpchhphcphchphhhphhppcphp 101- 150dddd.....dddddddddddddddd....:....dddddddd.....ddd 151- 200.........:.........:.........:.........:.........: chhhp hch hhccchchchhcchhchchpchhhhccphcp AAAAA AAA AXXAAAAAAAAAAAAAAAAXXXAAAAAAAAA ---KLLYQ------AKL--ALDEDLRLKVVRKMFELRFGEPAPARRSVEQ my_fasta_file ++++ +++ ++ + | +++ + +++++ + + ++ + VGNETTEHGTIATITPQAPTSEIQLTDYGALTLDCSPRTGLDFNEMVLLT 3G7T_A BBBXXXXXBBBBBBXXXBBBBBBXXXXXXXXXXXBBBBBBXXBBBBBBAA hppcppchpphhphphphhppchphpchphhphchphcpphchpchhhhp 151- 200ddd.....dddddd...dd:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hcphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpph AAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAA LRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSC my_fasta_file + +++ ++ +| ++ + + + +++| +++ MKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLVTFKTAHAKKQEA 3G7T_A AAXXXXXXBBXXXXXXXXXXXBBBBXXXXXBBBBXXXXAAAAAAAXXXXB hcccphhhhcphhhchhhhhppphppppcphpcpchhhphcphhhccpch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhphpchhhhhhphhhhhphhhppchhphhh chhc hhch AAAAAAAAAAAXXXXXXBBBBBXXXXXXAAA AAAA AAXA LYGVTEAAILAAGYAPAIGFVHTGKPLSFVY--DIAD---------IIKF my_fasta_file ++ ++ ++ ++|+ ++ | +++| + ++ |++ VVLGSQEGAMHTALTGATEIQTSGTTTIFAGHLKCRLKMDKLTLKGISYV 3G7T_A BBXBBXXBBBBXXXXXBBBBBBXXXXXXXXXBBXXXXBBBBBBBBBXXXX hhhpppcphhhphhpphpchppppppphhhphhchchchcchphcphphh 251- 300.........:.........:.........:.dd....ddddddddd...: 301- 350.........:.........:.........:.........:.........: c phhhch hc hhccp hpchccchc hhhcchhcpp A AAAAAA AA AAAXX XXXXXAAAA AAAAAAAAAA D-------TVVPKA--FE----IARRN--PGEPDREVR--LACRDIFRSS my_fasta_file + ++ ++ + + +++ ++ +++ +++ MCTGSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSSQDEKGVTQNGR 3G7T_A XBBBBBBBXXXXXXBBXXBBBBXXXXXBBXXXXXXXXXBBXXXXXXBBBB hhppphchccchhcpphpphhhphchcppchhhchhhpppcccphppppc 301- 350.ddddddd.:....dd..dddd.....dd:........dd.........: 351- 397.........:.........:.........:.........:....... cphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++| | ++ + ++| || ++ + + +|+++ | + + || LVTANPIVTDKEKPVNIEAEPPFGESYIVVGAGEKALKLSWFKKGSS 3G7T_A BXXXXBBBBBBBXXXXXXBBBBBBBXXXXBXXXXXXBBBBBBXXXXX hhphphhhpcccchhphchchhhpcphhhhphpcchhchphhccppp 351- 397.........:.........:.........:.........:....... The seq2struc alignment: my_fasta_file ---> 2Z30_A align_len=335 ene=-130.00 identity=5.373134 hpc_err=42.089552 size_err=0.000000 ins=15 del=30 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphh hhccchphhhhphpphchhcphhhhhccpphcphhhhpph XBBXXXXXX XXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX MTWLPLNPI-PLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file +|+ + + +++ + + |++++ | +++ | + +++ STQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAAN 2Z30_A XXXXXXXXXAAAAAXXXXXXXXXXXXXXXXXBBBBBBXXXXXXXXXXXXX ppphhpphhhphcchchhphhphpcpphphhphhhhcpphchchhchhhp 1- 50.........d.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhhc h ppchp hhhhchhhp hpphhhhhpchph BBBBBB X XXXXX AAAAAAAAA XXXBBBBBXXXXX ACIMLE--------P----GTRVS-HAAVRLAAQ--VGTLLVWVGEAGV- my_fasta_file + + + ++ |+++ + + +| +++ || IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQ 2Z30_A BBBBBBXXXXXXXXXAAAAXXXXXAAAAAAAAAAXXXXXXXXXXXXXXXB hhhhhpphcpchppchcchhcppphpphhhpphhhhppchphhphhhphp 51- 100......dddddddd.dddd:....d....:....dd...:.........d 101- 150.........:.........:.........:.........:.........: chhh ppphpph cpcchhhphchhhccchchchhcchhchchpchhh BBBB XXXXXXX AAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAA -RVYA--SGQPGGA-RSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAP my_fasta_file ++ + + + |+ ++ + ++ ++ ++|++ ++ +| IYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAA 2Z30_A BBBBBXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXX hhphchhchcpppphpchhhphcphhhphcphhcccpcphhhpchccchh 101- 150d....dd..:....d....:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: h ccphcphcphcppchchphhhhh cphphphppcchchcchccpc A AAAAAAAAAAAAAAAAAAAAAAA AAXXXXXXXXXXXXXXXXXXX A----RRSVEQLRGIEGSRVRATYALLA-KQYGVTWNGRRYDPKDWEKGD my_fasta_file + + ++++ ++ + +++|+ + ++ ++ + |+++++++ +++ EVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPE 2Z30_A XBBBBXXXXXXXXAAAAAAAAAAAAXXXBBBBBXXXXXXXXXXXXXXXXX chhphphpphhccphhhchhhphhphphhhhhhpppcphhphphhhhhhc 151- 200.dddd....:.........:........d:.........:.........: 201- 250.........:.........:.........:.........:.........: phpphhphhpphhhphpchhhhhhphhhhhphhhppc hhphhhchh AAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXX XXXAAAAAA TINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGK----PLSFVYDIA my_fasta_file +|+++ +++ + ++ + ++ + +|+++ + + ++ VIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSYETLMGTAMATP 2Z30_A BBBBBBBXXXXXXXXXXXXXXXBBBBXXXBBBBBXXXBBBBBXXAAAAAA hhhhphhcppcphhphppcphchphhphchhpphhccphcphhpphhhph 201- 250.........:.........:.........:.......dddd........: 251- 300.........:.........:....iiiiiiiiiiii...:.........: chhchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcc AAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAA DIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIED my_fasta_file + + ++ ++| ++++ ++ + +|++ ++++ HVSGVVALIQAAYYQKYGKILPVG------------TFDDISKNTVRGIL 2Z30_A AAAAAAAAAAAAAAAAAXXXXXXX XXXXXXXXXAAAAA hhpphhhhhphhhhpchpchhhhp phcchpcpphcphh 251- 300.........:.........:.........:.........:.........: 301- 335...iii...:.........:.........:..... hhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + +|+ ++++ + + ++ ++ ++ HIT---ADDLGPTGWDADYGYGVVRAALAVQAALG 2Z30_A AAA XXXXXXXXXXXXXXXXXXXAAAAAAAAAX hhp hcchphpphchchphphhchhhhhphhhp 301- 335.........:.........:.........:..... The seq2struc alignment: my_fasta_file ---> 3EFC_A align_len=341 ene=-114.00 identity=7.917888 hpc_err=41.642228 size_err=0.000000 ins=14 del=36 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhh ccchphhhhphp phchhcp X BBXXXXXXXX XXXXBBBBBXXX BBBBXXX --M---TWLPLNPIPL------KDRVSMIFLQYG---------QIDVIDG my_fasta_file + +++++ ++| ++++++ + +++ + GFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNF 3EFC_A XXXBBBBBXXXXXXXXAAAAAAXXXXXXXXXXXXAAAAAAAAAAAAAXXB phhhcchhhcphpchhhphhhhphhhcppcphpccchppphchhhhppph 1- 50dd.ddd...:......dddddd.......:....ddddddddd......: 51- 100.........:.........:.........:.........:......iiii hhhhhccpph cphhhhpphhhhhhchppchphhhhchhhphpphhhh BBBBBBXXXX BBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBB AFVLIDKTGI---RTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVW my_fasta_file ++|+ + |+ + ++++ |+|+ + | ++ ++ EDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASG---- 3EFC_A BBBBBBXXXXBBBBBBBBXXBBBBBBBBXXXXXXAAAAAAAAAAAX cchchhccpcphhhphccchphhphphpppcphccchhcpphchpp 51- 100.........:ddd......:.........:.........:.........: 101- 150i.....iiii.........:.........:.........:.........: hpchphchhhppphpphcpcchhhphchhhccchchchhcchhchchpch BXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXX VGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEP my_fasta_file + |+ |+ + + + ++ ++ ++ |+++ ++|++ -VRVGE----SLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRV 3EFC_A XXXXX XXXXXXAAAAAAAAAAAAAXXXXXXXBBBBBXXXXXXXBB hchpc phccpphhchccphcchhhphpchphphchhhphhhcpch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhccphcphcphcppchchphhhhhcphphphppcchchcchccpcphp AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAA APARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTIN my_fasta_file + +++++| +++ +++ + + ++ + +|+ ++| ++ + DLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRK 3EFC_A BBBBBBBXXXXXXXXXXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA chchhhpcphphchpphphhpphhhppcchhphhphccchhhhphhpccc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: phhphhpphhhphpchhhhhhphhhhhph hhppchhp h hh AAAAAAAAAAAAAAAAAAAAXXXXXXBBB BBXXXXXX A AA QCISAATSCLYGVTEAAILAAGYAPAIGF---VHTGKPLS--F-----VY my_fasta_file +++ + + +|+ ++++ + +| + + |+ ++ ++ YQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEG 3EFC_A AAAAAAAAAAAAAAAAAAAXXXXXXBBBBXXXBBXXXXXXBBXBBBBBXX hpcpchhpchcphcphhhccphhchphcppphphphcccphhhphphpcp 201- 250.........:.........:.........ddd.......:dd.ddddd.: 251- 300.........:.........:.........:iiiii....:.........: chh chhchcphhhchhchhccphpchccchchhhcchhcppcphhch AAA AAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAA DIA---DIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKL my_fasta_file |+ +++ +++ ||+ + ++|| + + ++ + |+++ DQYKLSGVEVSGNLAGHSAEIEQLTKIEPG-----ELYNGTKVTKMEDDI 3EFC_A XXXBBBBBXXXXXXXXXAAAAAAXXXXXXX XXXXAAAAAAAAAAA cphchpphchppphhphphchcphpchchp chhpppchpchccch 251- 300...ddd...:.........:.........:.........:.........: 301- 341.........:.........:.........:.........:. hhhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++| + |++++++ |++ +++++ +|+| ++ ++++ KKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 3EFC_A AAAAAAXXXXXXBBBBBBBBBXXXXBBBBBBBBBXXXXXXX cchhpchphhhhchpphhchpchccphchchphchppchhh 301- 341.........:.........:.........:.........:. The seq2struc alignment: my_fasta_file ---> 1O6C_B align_len=381 ene=-136.00 identity=4.199475 hpc_err=37.270340 size_err=0.000000 ins=2 del=76 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhh hphhhhccchphhhhphpphchh X BBXX XXXXXXXXXXBBBBBXXXBBBBX --M-----TWLP-----------LNPIPLKDRVSMIFLQYGQIDVI---- my_fasta_file + + ++ | ++ + ++| + ++ MKKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVL 1O6C_B XXXBBBBBBBXXAAAAAAAAAAAAAAXXXXXBBBBBBBXXXXXXXXAAAA hcchchhphhppchchhchhhhhhchcchhchcphhphphphcphhcphh 1- 50dd.ddddd.:..ddddddddddd......:.........:......dddd 51- 100.........:.........:.........:.........:.........: cphhhhhccpphcphhh hpphhhhhhchppc XXBBBBBBXXXXBBBBB XXXXBBBBBBXXXX --DGAFVLIDKTGIRTHIP-----------------VGSVACIMLEPGTR my_fasta_file ++ + + |+ + +++ ++ + ++ | DAFHIKPDFDLNIMKERQTLAEITSNALVRLDELFKDIKPDIVLVHGDTT 1O6C_B AAXXXXXXBBXXXXXXXXXAAAAAAAAAAAAAAAAAAAXXXBBBBBXXXA chhhhchchchphhcccpphhchppphhhchcchhcchchchhhhhpcpp 51- 100dd.......:.........ddddddddddddddddd...:.........: 101- 150.........:.........:....ii...:.........:.........: hphhhhchhhphpphhhhhpchphchhhppphpphcpcchhhphchhh XXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAX VSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLAL-- my_fasta_file + |+++ | + + + | ++++ ++ ++++ + ++ ++ |+ TTFAGSLAAFYHQIAVGHVEAGLR--TGNKYSPFPEELNRQMTGAIADLH 1O6C_B AAAAAAAAAAAXXXBBBBBXXXXX XXXXXXXXXAAAAAAAAAAAXXBB pphhpphhhhhhphhhphhchphc pppchphhhcchpcphpphhhchh 101- 150.........:.........:.........:.........:........dd 151- 200.........:.........:.........:.........:.........: ccchchchhcchhchchpchhhhccphcphcphcppchchphhhhhcphp XAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXX DEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYG my_fasta_file ++++ ++++ + +|+ ++ + +++++++ +|+ |+ ++ FAPTGQAKDNLLKENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGE 1O6C_B BBXXAAAAAAAAXXXXXXXXBBBXXXAAAAAAAAAXXXXXXXAAAAAAXX hhhppphccphhccpcchcphhhpppphhchhppphccphphhhhcphpc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hphppcchchcchccpcphpphhphh pphhhphpchhhhhhphh XXXXXXXXXXXXXXXXXAAAAAAAAA AAAAAAAAAAAAAAXXXX VTWNGRRYDPKDWEKGDTINQCISAA------TSCLYGVTEAAILAAGYA my_fasta_file + +++ ++ ++ +++|+ ++ + + + ++ + +| DKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHLNPVVREA 1O6C_B XBBBBBXXXAAAAAAAAAAAAAAXXXBBBBBBXXXXAAAAAAAAAAXXXX cchhhhphhcccphpchhcphhchhcchhpchcchphhhhhhhphhhcch 201- 250.........:.........:......dddddd.......:.........: 251- 300.........:.........:.........:.........:.........: hhhphhhppchhphhhchhc h hchcphhhchhchhc cphpch XXBBBBBXXXXXXAAAAAAA A AXAAAAAAAAAAAAA XXXXXX PAIGFVHTGKPLSFVYDIAD-I----IKFDTVVPKAFEIAR---RNPGEP my_fasta_file ++|++ + + ++ + |+++ + ++ + ++ + AHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPV 1O6C_B XXBBBBXXXXAAAAAAAAAAXXBBBBXXAAAAAAXXXXXXXBBBXXXXXX hhchhpcpcchhhhchhchhchhphhhcphhhhpcppphpcchhphpchh 251- 300.........:.........:d.dddd...:.........:.ddd.....: 301- 350.........:.........:.........:.........:.........: ccchchh hcchhcppcphhchhhhhcchhhhpchphhhhh XAAAAAA AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX DREVRLA--------CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPP-- my_fasta_file ++++ ++ + ++ + +++ + + + ++ | + ++ LVLRDTTERPEGVEAGTLKLAGTDEENIYQLAKQLLTDPDEYKKMSQASN 1O6C_B XAAAAAAXXBBBXXXXAAAAAAAAAAAAAXAAAAAAAAXXXXXXXXXXAA hhhccppcchcphchpphchhppcccphhphhcphhpchcchcchpphpp 301- 350.......dddddddd....:.........:.........:........dd 351- 381.........:.........:.........:. cchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXX ---------EDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + + + ++ PYGDGEASRRIVEELLFHYGYRKEQPDSFTG 1O6C_B AAAAAAAAAAXXXXXXXXXXXXXXXXXXXXX hhpcpchpcchhcchhhhhphcccphcphpp 351- 381ddddddddd:.........:.........:. The seq2struc alignment: my_fasta_file ---> 1TXD_A align_len=373 ene=-40.00 identity=6.702413 hpc_err=37.265417 size_err=0.000000 ins=0 del=68 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hh hphh hhccchphhhhphpphchhcphhhhhccpph XBB XX XXXX XXXXXXBBBBBXXXBBBBXXXBBBBBBXXXX MTW----LP----LNPI--PLKDRVSMIFLQYGQIDVIDGAFVLIDKTGI my_fasta_file ++ + | + + | ++ ++|+| ++ +||+ ++++ PPNWQQLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQ 1TXD_A XXXAAAAXXAAAAXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXAA hhphpphhpcchhhphchhchccpchhpchhhpcchhhcphchhcphhhp 1- 50...dddd..dddd....dd:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: cphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppp BBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXX RTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQ my_fasta_file |++++++++ ++ + + + ++ +++ + + + + | + + RVSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIG 1TXD_A AAAAAXXXXAAAAAAAAXXAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXA chpccphhphpchcchhpphcchhphhhphpcphchhcccpcpphhcphp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hpphcpc chhhphchhhccchc hchhcchhchchpchhhhccphcph XXXXAAA AAAAAAAAAXXAAAA AAAAAAAAAAAAXXXAAAAAAAAAA PGGARSD--KLLYQAKLALDEDLR-LKVVRKMFELRFGEPAPARRSVEQL my_fasta_file + + ++ ++++ | | + + ++ + | +|+ +++ +| EDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDA 1TXD_A AAAAAAAXXAAAAAAAAAAAAAAAXAAAAAAAAAAAAAAXAAAAAAAAAA cchhphhpphpccchchhhhphhppphhhhchhcpcpcccpchpphhpch 101- 150.......dd:.........:....d....:.........:.........: 151- 200.........:.........:.........:.........:.........: cp hcpp chchphhhhhcphphphppcchchcchccpcphpp AA AAAA AAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAA RG--------IEGS-RVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQ my_fasta_file + ++ + ++ ++ ++ + + ++| +||+ + ESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAAD 1TXD_A AAXXXXXXXXAAAAXXAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAA cpphhhcchphcchhhpphpchpchhhhhcphhchpchhpcccchcchhc 151- 200..dddddddd....d....:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhch AAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXA CISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKF--- my_fasta_file + + + + +|++++ ++ + + +| ++++|++ + + HCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDL 1TXD_A AAAAAAAAAAAAAAAAAAAAAAAAAAAABBXXXXXAAAAXXXXXXXXBBB hhcphhphhpphhcchcpcpchcchpcchcppphchpchhphcchcphch 201- 250.........:.........:.........:.........:.......ddd 251- 300.........:.........:.........:.........:.........: cphhhchh ch hc cphpchc cch AAAAAAAA AA AA XXXXXXX AAA -------DTVVPKAF------EI--------AR---RNPGEPD---REV- my_fasta_file ++ + + + + + TKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKI 1TXD_A BBBBBBBXXXXXXXXBBBBBBXXBBBBBBBBXXBBBXXXXXXXBBBXXXB pccchhhcphhhhchpcccphchhphhhcchhhhhpcpccchhhchhpch 251- 300ddddddd..:.....dddddd..dddddddd..ddd...:...ddd...d 301- 350.........:.........:.........:.........:.........: chhhc chhc ppcphhchhhhhcchhhhpchphhhh AAAAA AAAA AAAAAAAAAAAAAAAAAXXXXXXXXX ----RLACR-------DIFR----SSKTLAKLIPLIEDVLAAGEIQPPAP my_fasta_file +++++ ++++ ++ +++| ++ +++| + |+ LASTADSKHTFSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQ 1TXD_A BBBBXXXXXBBBBBBBXXXXBBBBBBBXXXAAAAAAAAAAAAAAAAAAAA hhpphcpchphphhhchpphhhcphhpcpchhhhhphpcpphphhchhhp 301- 350dddd.....ddddddd...:dddd.....:.........:.........: 351- 373.........:.........:... hcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXX PEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ + +| ++| +++++ | TVSEKTVWQDLICRMAASVKEQS 1TXD_A AXAAAAAAAAAAAAAAAAXXAAA phpccphhpchhhchhhphccpp 351- 373.........:.........:... The seq2struc alignment: my_fasta_file ---> 1RU3_A align_len=728 ene=158.00 identity=3.021978 hpc_err=21.565934 size_err=0.000000 ins=0 del=423 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file INFDQIFEGAIEPGKEPKRLFKEVYEGAITATSYAEILLSRAIEKYGPDH 1RU3_A XXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX hphcphhcphhchpcchcchhcchhcphhphpphhchhhpchhcchphch 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: hphhhh phhhhccchp hhhhphp XBBXXX XXXXXXXXXB BBBBXXX -----MTWLPL------NPIPLKDRVS----------MIFLQYG------ my_fasta_file +| | +++ ++ +|++ PVGYPDTAYFLPVIRAFSGEEVRTLKDMVPILNRMRAQIKSELTFENARL 1RU3_A XXXXXXXXXXXAAAAAAXXXXXXXXXXAAAAAAAAAAXXXXXXXAAAAAA hhphhcphhhhhhhchhppcchcphcchhhhhpchchphcpchphcphch 51- 100ddddd....:.dddddd..:.......dddddddddd..:....dddddd 101- 150.........:.........:.........:.........:.........: phchhcphhhhhccpphcph hh BBBBXXXBBBBBBXXXXBBB BB ----------------QIDVIDGAFVLIDKTGIRTH------------IP my_fasta_file + ++ + +++ ++++ + AGEATWYAAEIIEALRYLKHTPENPIVVPPWTGFIGDPVVRQYGIKMVDW 1RU3_A AAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAXX hpchphhhhchhchhchhchphcphhhhhhhpphhpchhhcphphchhch 101- 150dddddddddddddddd...:.........:......dddddddddddd.: 151- 200.........:.........:.........:.........:.........: hpphhhhhhchppc hphhhhchhhphpphhhhh p XXXXBBBBBBXXXX XXAAAAAAAAAXXXBBBBB X VGSVACIMLEPGTR--VSHAAVRLAAQVGTLLVWV--------------G my_fasta_file +++++ | ++ +++ | + +|+ | | TIPGEAIIIGRAKDSKAAKKIVDDLMGKGLMLFLCDEIIEQLLEENVKLG 1RU3_A XXXXBBBBBBXXXXAAAAAAAAAAAAAXXXBBBBBXXAAAAAAAXXXXXX phhpchhhhpchccpchhcchhcchhpcphhhhhhcchhcphhccphchp 151- 200.........:....dd...:.........:.....dddddddddddddd: 201- 250.........:.........:.........:.........:.........: chphchhhppphpphcpcchhhphchh hccchchchhcchhchc XXXXBBBBXXXXXXXAAAAAAAAAAAA XXAAAAAAAAAAAAAAA EAGVRVYASGQPGGARSDKLLYQAKLA----LDEDLRLKVVRKMFELR-- my_fasta_file +++ + ++ + +++ | | + ++ ++++ ++ + VDYIAYPLGNFTQVVHAANYALRAGLMFGGIAPGLRDAHRDYQRRRVLAF 1RU3_A XXXXBBBBBXXXXXAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAXXBB hchhhhhhpphpphhhhhphhhchphhhpphhhphcchhcchpccchhhh 201- 250.........:.........:.......dddd........:........dd 251- 300.........:.........:.........:.........:.........: hpchhhhccphcphcp h AXXXAAAAAAAAAAAA A ----FGEPAPARRSVEQLRG-----------------------------I my_fasta_file + ++ + ++ + ++ | VLYLGEHDMVKTAAAMGAIFTGFPVITDQPLPEDKQIKDWFISEPDYDKI 1RU3_A BBBBXXXXAAAAAAAAAAAAXXXXBBBXXXXXXXXXXXXXBBBXXXXXXA hhhhpchchhcphhhhphhhpphhhhpcphhhcccphcchhhpchchcch 251- 300dddd.....:.........:ddddddddddddddddddddddddddddd: 301- 350.........:.........:.........:.........:.........: cppchchp AAAAAAAA EGSRVRAT------------------------------------------ my_fasta_file + + VQTALEVRGIKITSIDIDLPINFGPAFEGESIRKGDMHVEFGGGKTPSFE 1RU3_A AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXXXXXB hpphhchcphchpphchchhhphphhhcpcphccpchhhchpppcphphc 301- 350........dddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: hhhhhcphphphp pcch chcchccp AAAAAAAXXXXXX XXXX XXXXXXXX ---------------YALLAKQYGVTWN--GRRY------DPKDWEKG-- my_fasta_file + + ++ | ++++ +|++| + LVRMVGPDEIEDGKVEVIGPDIDSVEPGGRLPIGIVVDIYGRKMQEDFEP 1RU3_A BBBBXXXXXXXXXXXXXXXXXXXXXXXXBBXXXXBBBBBBXXXXXXXXAA hhchhphcchccpchchhphchcphchppchhhphhhchhpcchpcchch 351- 400ddddddddddddddd....:........dd....dddddd........dd 401- 450.........:.........:.........:.........:.........: cphpphh phhpph hhphpchh XAAAAAA AAAAAA AAAAAAAA ---DTINQCI--------------------SAATSC------LYGVTEAA my_fasta_file |++ + +|+++ |+ ++|+ VLERRIHYFTNYGEGFWHTAQRDLTWVRISKEAFAKGARLKHLGQLLYAK 1RU3_A AAAXAAAAAAXXXXXBBBBXXXXXXBBBBBAAAAAAXXXXXXAAAAAAAA hhccchhhhpphpcphhhphpcchphhchpcchhhcphchchhpphhhhc 401- 450ddd......:dddddddddddddddddddd......dddddd.......: 451- 500.........:.........:.........:.........:.........: hhh hphhhhhphhh p pchhphhhchhchhchcp AAA XXXXXXBBBBB X XXXXXAAAAAAAAAXAAA ILA-AGYAPAIGFVH---T------GKPLSFVYDIADIIKFDT------- my_fasta_file ++ ++ ++++|+ + + +++++ + + FKQEFPSIVDRVQVTIYTDEQKVLELREIARKKYAERDARLRELSDEAVD 1RU3_A AAAXXXXXXXBBBBBXXXXAAAAAAXXXXXAAAAAAAAAAAAAXXXXXXX hcpchhphhcchphphhpccpchhchcchhccchhccchchcchpcchhc 451- 500...d.....:.....ddd.dddddd....:.........:...ddddddd 501- 550.........:.........:.........:.........:.........: hhhchhchhc AAAAAAAAAA -------------------------------VVPKAFEIAR--------- my_fasta_file +++ + ++ TYYSCLLCQSFAPTHVCIVSPERVGLCGAISWLDAKAAYEINPNGPNQPI 1RU3_A BBBBBXXXXXXXXXXXBBBXXXXXXXXXXXXAAAAAAAAAAXXXXXXXBB phhphhhhpphhhphhhhhphcchphhphhphhchchhhchphpphpphh 501- 550ddddddddddddddddddddddddddddddd........:.ddddddddd 551- 600.........:.........:.........:.........:.........: cph pchc cchch XXX XXXX AAAAA -RNP---GEPD-------REVRL--------------------------- my_fasta_file + +++ ++ + PKEGLIDPVKGQWESFNEYIYKNSQRTIERMNLYTIMEYPMTSCGCFEAI 1RU3_A BXXXBBBXXXXBBAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXBB hccphhchhcpphcphpchhhcpppcphcchphhphhchhhpphphhchh 551- 600d...ddd..:.ddddddd.:...ddddddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: hhcchhcp AAAAAAAA --------------------------ACRDIFRS---------------- my_fasta_file + + +++ MAYLPELNGFMIVNREHSGMTPIGMTFSTLAGMVGGGTQTPGFMGIGKSY 1RU3_A BBBBXXXXBBBBBBXXXXXXXXXXXXAAAAAAAAXXXXXXXXBBBBXXXX hhhhhchpphhhhpcchpphphhphphpphhphhpppppphphhphpcph 601- 650dddddddddddddddddddddddddd...:....dddddddddddddddd 651- 700.........:.........:.........:.........:.........: pcphhc hhhhhcchhhhpchphhhhhcch AAAAAA AAAAAAAAAAXXXXXXXXXXXXX --------------------SKTLAK-LIPLIEDVLAAGEIQPPAPPEDA my_fasta_file +++ ++ +| +++|++ + +++++ IGSRKFVKADGGLARVVWMPKDLKEQLRSIIEERAEEEGLGRDFIDKIAD 1RU3_A XXXXXXXXXXXXXXXBBBXXAAAAAAXAAAAAAAAAAXXXXXXXXXXXXX hppcchhchcpphhchhhhhcchccphcphhccchcccphpcchhcchhc 651- 700dddddddddddddddddddd......d..:.........:.........: 701- 728.........:.........:........ phhhhh hhhphpchphcpp XXXXXX XXXXXXXXXXXXX QPVAIP---------LPVSLGDAGHRSS my_fasta_file +|+++ ++++ ++++++++ ETVGTTVDEVLPFLEEKGHPALSMEPLL 1RU3_A XXXXXXAAAAAAAAAAXXXXXXXXXXXX cphppphcchhhhhcccphhhhphchhh 701- 728......ddddddddd....:........ The seq2struc alignment: my_fasta_file ---> 1OAO_D align_len=728 ene=160.00 identity=3.296703 hpc_err=21.703297 size_err=0.000000 ins=0 del=423 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file TDFDKIFEGAIPEGKEPVALFREVYHGAITATSYAEILLNQAIRTYGPDH 1OAO_D XXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX pchcchhcphhhcpcchhhhhcchhhphhphpphhchhhpphhcphphch 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: h phhhhphhhh ccchph X BBXXXXXXXX XXXXBB ----------M------TWLPLNPIPL-----------KDRVSM------ my_fasta_file +++ + ++ + +|++ PVGYPDTAYYLPVIRCFSGEEVKKLGDLPPILNRKRAQVSPVLNFENARL 1OAO_D XXXXXXXXXXXAAAAAAXXXXXXXXXXAAAAAAAAAAAXXXXXXAAAAAA hhphhcphhhhhhhchhppcchcchpchhhhhpccchphphhhphcphch 51- 100dddddddddd.dddddd..:.......ddddddddddd.:....dddddd 101- 150.........:.........:.........:.........:.........: hhhphpphchhcphhhhhcc pphcphhh BBBXXXBBBBXXXBBBBBBX XXXBBBBB ----------------IFLQYGQIDVIDGAFVLIDK------TGIRTHIP my_fasta_file ++++ ++ ++ ++ + +|| + + AGEATWYAAEIIEALRYLKYKPDEPLLPPPWTGFIGDPVVRRFGIKMVDW 1OAO_D AAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXAAAAAAXXXXXXXX hpchphhhhchhchhchhchchcchhhhhhhpphhpchhhcchphchhch 101- 150dddddddddddddddd...:.........:......dddddd.......: 151- 200.........:.........:.........:.........:.........: hpphhhhhhchppc hphhhhchhhphpphhhhh p XXXXBBBBBBXXXX XXAAAAAAAAAXXXBBBBB X VGSVACIMLEPGTR--VSHAAVRLAAQVGTLLVWV--------------G my_fasta_file +++++ | | ++ + + | + |+ | | TIPGEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKLG 1OAO_D XXXXBBBBBBXXXXAAAAAAAAAAAAAXXXBBBBBXAAAAAAAAXXXXXX phhpchhhhpchccpchhhchhcchhphphhhhhhcchhcphhccphchp 151- 200.........:....dd...:.........:.....dddddddddddddd: 201- 250.........:.........:.........:.........:.........: chphchhhppphpphcpcchhhphchh hccchchchhcchhchc XXXXBBBBXXXXXXXAAAAAAAAAAAA XXAAAAAAAAAAAAAAA EAGVRVYASGQPGGARSDKLLYQAKLA----LDEDLRLKVVRKMFELR-- my_fasta_file +++ + ++ + +++ | ++ ++ + +++ ++ | IDYIAYPLGNFTQIVHAANYALRAGMMFGGVTPGAREEQRDYQRRRIRAF 1OAO_D XXXXBBBBBXXXXXAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAXXBB hchhhhhhpphpphhhhhphhhchphhhpphphphcccpcchpccchchh 201- 250.........:.........:.......dddd........:........dd 251- 300.........:.........:.........:.........:.........: hpchhhhccphcphcph cppc AXXXAAAAAAAAAAAAA AAAA ----FGEPAPARRSVEQLRGI-------------------------EGSR my_fasta_file + ++ + ++ + +++ + + VLYLGEHDMVKTAAAFGAIFTGFPVITDQPLPEDKQIPDWFFSVEDYDKI 1OAO_D BBBBXXXXAAAAAAAAAAAAAXXXBBBXXXXXXXXXXXXXBBBXXXAAAA hhhhpchchhcphhhhphhhpphhhhpcphhhcccphhchhhphcchcch 251- 300dddd.....:.........:.ddddddddddddddddddddddddd...: 301- 350.........:.........:.........:.........:.........: hchphhhh AAAAAAAA VRATYALL------------------------------------------ my_fasta_file | + +++ VQIAMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYVEMGGNRTPAFE 1OAO_D AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXXXBBB hphhhcpcphchpchchchhhphphhhcpcphccpchhhchpppcphhhc 301- 350........dddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: hc phphphppcc h chcchccp AA AXXXXXXXXX X XXXXXXXX ------------AK----QYGVTWNGRR---Y--------DPKDWEKG-- my_fasta_file +| +++ +|+++ + LVRTVSESEITDGKIEVIGPDIDQIPEGSKLPLGILVDIYGRKMQADFEG 1OAO_D BBBBXXXXXXXXXXBBBBXXXXXXXXXXBBBXBBBBBBBBXXXXXXXXAA hhcphpcpchpcpchchhphchcphhcppchhhphhhchhpcchphchcp 351- 400dddddddddddd..dddd.:........ddd.dddddddd........dd 401- 450.........:.........:.........:.........:.........: c ph pphhph hpphhhphpch X AA AAAAAA AAAAAAAAAAA ----D----TI-------------------NQCISA---ATSCLYGVTEA my_fasta_file ++ ++ +++ +++ VLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYGEILVAK 1OAO_D AAAAXAAAAAAXXXXBBBBBBXXBBBBBBBAAAAAAXXXAAAAAAAAAAA hhccchhchhphpcphhhpppcphphhchpcchhhcphchcphpchhhhc 401- 450dddd.dddd:.ddddddddddddddddddd......ddd:.........: 451- 500.........:.........:.........:.........:.........: hhhhhphhhhhphhhppchhphhhchhchhchcphhhchhch AAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAA AILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEI-------- my_fasta_file +++ + ++++|+++ ++++|+ + ++++ ++++ MKEEFPAIVDRVQVTIFTDEAKVKEYMEVAREKYKERDDRMRGLTDETVD 1OAO_D AAAAXXXXXXBBBBBBBXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXX hccchhhhhcchphphhpcchchcchhchhccchcccccchcphpccphc 451- 500.........:.........:.........:.........:..dddddddd 501- 550.........:.........:.........:.........:.........: hccphpchccchchhhcch AAXXXXXXXAAAAAAAAAA ----------------------ARRNPGEPDREVRLACRDI--------- my_fasta_file ++ + |+ +++++|++ | TFYSCVLCQSFAPNHVCIVTPERVGLCGAVSWLDAKASYEINHAGPNQPI 1OAO_D BBBBBXXXXXXXXXXXBBBXXXXXXXXXXXXAAAAAAAAAAXXXXXXXBB phhphhhhpphhhphhhhhphcchphhphhphhchchphchphhphpphh 501- 550dddddddddddddddddddddd.......:.........:.ddddddddd 551- 600.........:.........:.........:.........:.........: hcppcphhch AAAAAAAAAA -------------FRSSKTLAKL--------------------------- my_fasta_file + + +| PKEGEIDPIKGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCGCFEAI 1OAO_D BXXXBBBXXXXBBAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXBB hccpchchhcphhcphpchhhphppcphcphhhhphhcphhpphphhchh 551- 600ddddddddddddd......:...ddddddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: hhhhcchh AAAAAAAA --------------------------IPLIEDVL---------------- my_fasta_file ++ + MAILPECNGIMITTRDHAGMTPSGMTFSTLAGMIGGGTQTPGFMGIGRTY 1OAO_D BBBBXXXXBBBBBBXXXXXXXXXXXXAAAAAAAAXXXXXXXXBBBBXXXX hhhhhchpphhhppcchhphphpphphpphhphhpppppphphhphpcph 601- 650dddddddddddddddddddddddddd...:....dddddddddddddddd 651- 700.........:.........:.........:.........:.........: hhpch ph hhhhcc hph AXXXX XX XXXXXX XXX ----------AAGEI---QP-----------------PAPPED----AQP my_fasta_file +++++ +| ++ +|| ++ IVSKKFISADGGIARIVWMPKSLKDFLHDEFVRRSVEEGLGEDFIDKIAD 1OAO_D XXXXXXXXXXXXXXXBBBXXAAAAAAAAAAAAAAAAAXXXXXXAAAAXXX hhpcchhphcpphhchhhhhcphcchhhcchhccphccphpcchhcchhc 651- 700dddddddddd.....ddd.:ddddddddddddddddd..:...dddd..: 701- 728.........:.........:........ hhhhhh hphpchphcpp XXXXXX XXXXXXXXXXX VAIPLP-----------VSLGDAGHRSS my_fasta_file ++|+++ ++ ++++++++ ETIGTTVDEILPYLEEKGHPALTMDPIM 1OAO_D XXXXXXAAAAAAAAAAAXXXXXXXXXXX cphppphcchhhhhcccphhhhphchhh 701- 728......ddddddddddd..:........ The seq2struc alignment: my_fasta_file ---> 2FNC_A align_len=379 ene=-118.00 identity=3.957784 hpc_err=40.633246 size_err=0.000000 ins=0 del=74 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phh hhphhhhccchphhhhph pphc X BBX XXXXXXXXXXXBBBBBXX XBBB M---TWL----------PLNPIPLKDRVSMIFLQY-----------GQID my_fasta_file + + + ++ + ++ + ++ + ++ +++ KLTIWCSEKQVDILQKLGEEFKAKYGIPVEVQYVDFGSIKSKFLTAAPQG 2FNC_A XBBBBBXAAAAAAAAAAAAAAAAAAXXXBBBBBXXAAAAAAAAAAAXXXX chphhhpccphchhpchpcchchchphhhchphhchpphcpchhphhhpp 1- 50.ddd...dddddddddd..:.........:.....ddddddddddd...: 51- 100.........:.........:.........:.........:.........: hhcphhhhhccpphcphhhhpphhhhhhchppchphhhhchh hp hpp BXXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAA AA XXX VIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLA--AQ-VGT my_fasta_file +++ |+ + +++ + +++++ + ++ +++| + + QGADIIVGAHDWVGELAVNGLIEPIPNFSDLKNFYDTALKAFSYGGKLYG 2FNC_A XXXXBBBBBXXXAAAAAAXXXXXXXXXXXXXXXXXAAAAAAXBBXXBBXX pphchhhphhchhpchhhpphhchhhphpchcphhcphhchhphppchhp 51- 100.........:.........:.........:.........:..dd..d..: 101- 150.........:.........:.........:.........:.........: hhhhhpchphchh hppphpph cpcchhhphchh hcc BBBBBXXXXXBBB BXXXXXXX AAAAAAAAAAAA XXA LLVWVGEAGVRVY--ASGQPGGA--RSDKLLYQAKLA----------LDE my_fasta_file + + + + + + + ++ + +| ++ +++ VPYAMEAVALIYNKDYVDSVPKTMDELIEKAKQIDEEYGGEVRGFIYDVA 2FNC_A BBBBBBXXBBBBBXXXXXXXXXXAAAAAAAAAAAAAAXXXXXBBBBXXXX hhhhhchhhhhhpcchhcphhcphcchhcchcphccchppchcphhhchh 101- 150.........:...dd....:...dd....:.......dddddddddd..: 151- 200.........:.........:.........:.........:.........: chchchhcchhchc hp chhhhccphcphcphcppch AAAAAAAAAAAAAA AX XXAAAAAAAAAAAAAAAAAA DLRLKVVRKMFELR------FG--------EPAPARRSVEQLRGIEGSRV my_fasta_file + ++ +++ + +++++ ++ |+ +++ + NFYFSAPFILGYGGYVFKETPQGLDVTDIGLANEGAVKGAKLIKRMIDEG 2FNC_A XAAAAAAAAAAXXXBBBBBBXXBBBBBBBBXXXAAAAAAAAAAAAAAAXX phhhphhhhhphpphhhccphpphchpchphhpcphhcphchhcchhccp 151- 200.........:....dddddd..dddddddd.........:.........: 201- 250.........:.........:.........:.........:.........: chphhhhhcphphphppcchchcchccpcphpphhphhp phhhphpch AAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAA AAAAAAAAA RATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAAT--SCLYGVTEA my_fasta_file + | +++ ++ + + +++ +++++ +++++ + +++| VLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYKDAGINYGVAPIPELEP 2FNC_A XXXXXXXAAAAAAAAAXXXBBBBBBXXXXAAAAAAXXXXBBBBXXXXXXX hhphpcphpphcphhccphhhhhhpphhhhcphcchphphphhhhhchch 201- 250.........:.........:.........:.........dd........: 251- 300.........:.........:.........:.........:.........: hhhhhphhhhhphhhppchhp hhhchhchhchcphhhchhchhccphpc AAAAXXXXXXBBBBBXXXXXX AAAAAAAAAXAAAAAAAAAAAAAXXXXX AILAAGYAPAIGFVHTGKPLS-FVYDIADIIKFDTVVPKAFEIARRNPGE my_fasta_file + |++ + +|| +|+ ++ ++++ + ++++ ++ + ++++ GVPAKPFVGVQGFMINAKSPNKVIAMEFLTNFIARKETMYKIYLADPRLP 2FNC_A XXXXXXBBBBBBBBBXXXXXXAAAAAAAAAAXXXXAAAAAAAAAAXXXBB phhhchhhphpphhhphcphpchhhhchhpphhhcccphhchhhhchchh 251- 300.........:.........:.d.......:.........:.........: 301- 350.........:.........:.........:.........:.........: hccchchhh cchhcppcphh chhhhhcchhhhpc XXAAAAAAA AAAAAAAAAAA AAAAAAAAAAAXXX PDREVRLAC---RDIFRSSKTLA-------------KLIPLIEDVLAAGE my_fasta_file |++ +| ++ + + + + + + + ARKDVLELVKDNPDVVAFTQSASMGTPMPNVPEMAPVWSAMGDALSIIIN 2FNC_A XXAAAAAAAXXXAAAAAAAAAAAXXBBXXXXXXXXXAAAAAAAAAAAAAX hccchhchhccphchhhhppphphpphhhphhchhhhhphhpchhphhhp 301- 350.........ddd.......:...ddddddddddddd...:.........: 351- 379.........:.........:......... hphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXX IQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +| + +++++ |++ + +++ ++|+++ GQASVEDALKEAVEKIKAQIEKGSHHHHH 2FNC_A XXXXAAAAAAAAAAAAAAAAAXXXXXXXX pphphcchhcchhcchchphccpphhhhh 351- 379.........:.........:......... The seq2struc alignment: my_fasta_file ---> 1RGI_G align_len=348 ene=-111.00 identity=5.747126 hpc_err=42.816091 size_err=0.000000 ins=2 del=43 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhphhhhccchphhhhphpphch hcphhhhhccpp hcphhh XBBX XXXXXXXXXXXBBBBBXXXBBBB XXXBBBBBBXXX XBBBBB MTWL-PLNPIPLKDRVSMIFLQYGQIDV-IDGAFVLIDKTG---IRTHIP my_fasta_file ++ + ++ ++ + + ++ + + ++ + |+ + + VVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQ 1RGI_G XXXXAAAAAXXXXXXBBBBBBBXXBBBBXXXXXXXBBBXXXBBBBBBBBB hhchhchhchpcchphphhchcchchhhhhhphhpchhppchhhhhcphp 1- 50....d....:.........:........d:.........:.ddd.....: 51- 100.........:.........:.........:.........:.........: hpph hhhhhchppch phhhhchhhp hpp hhhhh XXXX BBBBBBXXXXX XAAAAAAAAA XXX BBBBB -VGSV---ACIMLEPGTRV-------SHAAVRLAAQ-VGT--LLVWV--- my_fasta_file + + ++ ++ + +| |+++ +| + ++| LRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGF 1RGI_G XXXXXBBBBBBBBBXXXXXAAAAAAAAAAAAAAAAAXXXXBBBBBBBXXX hcpphhphchhhhhppchppccpphhhhhphphcchhppchhphcchpph 51- 100d....ddd.:.........ddddddd...:......d..:dd.....ddd 101- 150.........:.........:.........:.........:.........: pchphchhhppphpphcpcchhhphchh hccch XXXXXBBBBXXXXXXXAAAAAAAAAAAA XXAAA -------GEAGVRVYASGQPGGARSDKLLYQAKLA------LDEDL---- my_fasta_file +++ +++|+ | + ++ ++ + + + + + ESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATE 1RGI_G XXAAAAAXXXXXXBBBXXXXXXXXXXXXXXXXXXXBBBBBBXXXXXBBBB cphphhphhcpphchccpphhpphchhhhpchhhpchhphcpcchhchpc 101- 150ddddddd..:.........:.........:.....dddddd.....dddd 151- 200.........:.........:.........:.........:.........: chchhcchhch chpchhhhccphcphcphcppchchphhhhhcphph AAAAAAAAAAA AAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX -RLKVVRKMFEL--RFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGV my_fasta_file + + +++ + + ++++ + + + ++ ++++ +++ + + VPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNER 1RGI_G BXXXXXXXXXXXBBBBBBXXBBBBBBXXXXXAAAAAAAAAAAAAAAAXXX hhhphcphpppchhhhchppphhphhppcppchcchchpphpcphccpcc 151- 200d........:..dd.....:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: phppcchchcchccpcphpphh phhpphhhphpchhhhhhphhhhhphh XXXXXXXXXXXXXXXXAAAAAA AAAAAAAAAAAAAAAAAXXXXXXBBBB TWNGRRYDPKDWEKGDTINQCI-SAATSCLYGVTEAAILAAGYAPAIGFV my_fasta_file + + +++ ++ + + +| ++ |+ + + +++|| ++ |++ + SGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYK 1RGI_G XXXXBBBBBBXXXXXAAAAAAAXXXXXXXXXXXXXAAAAAAAXXXXBBBB ppchphphhccphchchhhphhphchphhchpccphccchhpcchhchhc 201- 250.........:.........:..d......:.........:.........: 251- 300.........:.........:.........:.........:.........: hppchhphhhchhchhchcphhhchhchhccphpchccchchhhcchhcp BXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAA HTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRS my_fasta_file ++ | +++ ++++ +++|+ +++++ +| + + + + VSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANM 1RGI_G BBXXXXXXBBBBBBXXXXXXXXXXXXXXBBBBBXXXXXBBBBBBXXXXXA hppphphhhhphhhccphhhpphhcpcchhhhchpccpchhhhcpcphph 251- 300.........:.........:.........:.........:.........: 301- 348.........:......ii.:.........:.........:........ pcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +|+|++ + + ++ +++|+++++ +|+++++| ++ + ++ EERKAALKTASDFISK--MDYPKQTQVSVLPEGGETPLFRQFFKNWRD 1RGI_G AAAAAAAAAAAAAAAA XXXXXXXBBBBBBXXXXXAAAAXXXXXXXX cccchhhcphpchhpc hchhcppphphhhcppcphhhcphhcphcc 301- 348.........:.........:.........:.........:........ The seq2struc alignment: my_fasta_file ---> 3CJB_A align_len=372 ene=-130.00 identity=3.763441 hpc_err=39.247313 size_err=0.000000 ins=2 del=67 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhh phhhhccchphhhhphpphchhcphhhhhccpphcphh X BBXXX XXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBB -M---TWLPL--NPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHI my_fasta_file ++++ + | ++ +++++ ++ + ++ + + + TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 3CJB_A XXBBBBBXXXBBBBBBXXXXXXXBBBBXXBBBBXXXXBBXAAAAAXXXXB phhhhcpppphhchphhpcchhchhhhphhpchchpphhhphppccphhp 1- 50d.ddd....:dd.......:.........:.........:.........: 51- 100.........:.........:.........ii........:.........: hhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpph BXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXX PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGA my_fasta_file +++ ++++ | ++ |+ + + | + ++ + ++ ++++ DEAQSKRGILTLKYPIEHGIITNWDDMEK--IWHHTFYNELRVAPEEHPT 3CJB_A BBBXXBBXXBBXXAAAAAAAAAAAAAXXX XXXXXXXXBBBBBXXXXXA cchppccphhphchhhchphhpphcchcc hhhhphhpchchhhcchhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: cpcchhhphchhhccch chchhcchhchch pchhh AAAAAAAAAAAAXXAAA AAAAAAAAAAAAA XXXAA RSDKLLYQAKLALDEDL------RLKVVRKMFELRF-----GEPAP---- my_fasta_file ++ | ++ ++ +++ ++ +++ +++ LLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVL 3CJB_A AAAAAAAAAAAAXXXXXBBBBBBAAAAAAAAXXXXXBBBBBXXXXXBBBB hhpchhhphchpccchpphhhcphphhhhhhhhphhhphhhppcppphhh 101- 150.........:.......dddddd......:......ddddd.....dddd 151- 200.........:.........:.........:.........:.........: hc cphcp hcphcppchchphhhhhcphphph ppcch AA AAAAA AAAAAAAAAAAAAAAAAAAXXXXX XXXXX ---AR--RSVEQ---LRGIEGSRVRATYALLAKQYGVTW------NGRRY my_fasta_file + + |++ ++ ++++++++ +++ |+ ++ + DSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTT 3CJB_A BBBXXBBXXXXXBBBXXXAAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAA cppcphphphhhhcphhhhhhhhchchhpcchpchhhchhpccphphhpp 151- 200ddd..dd..:..ddd....:.........:.........dddddd....: 201- 250.........:.........:.........:.........:.........: chcchccpcphpphhphhp p hhhph pchhhhhhphhhh XXXXXXXXXAAAAAAAAAA A AAAAA AAAAAAAXXXXXX DPKDWEKGDTINQCISAAT----S----CLYGV----TEAAILAAGYAPA my_fasta_file ++ + + + +| +| + +++ + +++ +++ AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNE 3CJB_A AAAXXXXXXAAAAAAAAAAXXXXXBBBBXXXXXBBBBXXAAAAAAAXXXX hccchhcchccchhhhhhchcpchhphhpppphccphchhcpphhphppc 201- 250.........:.........dddd.dddd.:...dddd..:.........: 251- 300.........:.........:.........:.........:.........: hphhhppchhphhhchhchhchcphhhchhchh ccphpchccchch BBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAA AXXXXXXXAAAAA IGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIA----RRNPGEPDREVRL my_fasta_file +++ + +++ + ++ |+ + + + + +++ + + RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGT 3CJB_A XXXXXXXXXXAAAAAAAAAAXXXXXXAAAAAAXBBBBXXXXXXXXAAAAA chchhcphhphphhphcphphhcpphpphhchchchccchhhpphhpppp 251- 300.........:.........:.........:...dddd..:.........: 301- 350.........:.........:.........:.........:.........: hhcchhc ppcphhchhhhhcchhhhpchphhh hh AAAAAAA AAAAAAAAAAAAAAAAAXXXXXXXX XX ACRDIFR-----------SSKTLAKLIPLIEDVLAAGEIQPPA-----PP my_fasta_file + +++ + +| ++ | | | + + +++ + + TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 3CJB_A AAAAAAAXXXXXXXXBBXXXXXXXAAAAAAAAAAAXXXXXXXXBBAAAAA phhhphhcchpcchphhhhpphchchhhhhccchphhhppphhhphpphp 301- 350.......ddddddddddd.:.........:.........:...ddddd.: 351- 372.........:.........:.. cchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXX EDAQPVAIPLPVSLGDAGHRSS my_fasta_file + +++++ ++ + ++ ++ QMWITKQEYDEAGPSIVHRKCF 3CJB_A AAXXXAAAAAXXXXXBBBBBXX phhhpcpchcchphphhhcchh 351- 372.........:.........:.. The seq2struc alignment: my_fasta_file ---> 3BKB_A align_len=375 ene=-110.00 identity=5.600000 hpc_err=38.666666 size_err=0.000000 ins=2 del=70 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphh hhphp phch hcp hhhhhccp XBBXXXXXXXXXXXXBBB BBXXX BBBB XXX BBBBBBXX MTWLPLNPIPLKDRVSMI-------FLQYG---QIDV-IDG-AFVLIDKT my_fasta_file ++ + ++|+++++ ++| ++ + + + ++ PEVQKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQGKQEYVLSVLWD 3BKB_A XXXXXXXXXXXXXXXXXXAAAAAAAXXXXXBBBBBBBXXXXBBBBBBBBX hchpchhhcphhhhphhhchchhchhhhppchhhccpppcpchhhphhhc 1- 50.........:........ddddddd....:ddd....d.:.d.......: 51- 100.........:.........:.........:.........:.........: phcphhhh pphhhhhhchppch phhhhchhhp XXBBBBBX XXXBBBBBBXXXXX XAAAAAAAAA GIRTHIPV--GSVACIMLEPGTRV-SHAAVRLAAQ--------------- my_fasta_file | + | + + + + +|+++ + ++| + GLPRHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRA 3BKB_A XBBBBBBXBBBXXBBBXXXXXXXXAAAAAAAAAAAXXXXXXXXXXXXXBB phhchhhhpphcphhchcpcphhphhhhhchhhpppphhpccpphhhhch 51- 100........dd.........:....d....:.....ddddddddddddddd 101- 150.........:.........:.........:.........:.........: hpp hhhhhpchph chhhppphpphc XXX BBBBBXXXXX BBBBXXXXXXXA ----------------------VGT--LLVWVGEAGV-RVYASGQPGGAR my_fasta_file ++ +++ ++ + + +|+ + + + VPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPP 3BKB_A XXXXXXXXXXXXBBBBBBBBBXXXXBBBBBBBXXXXXBBBBBXXXXXXXA hhccchhhphcchhhpcphpcpphpchhppchchcpphhhhcphccphhh 101- 150dddddddddddddddddddddd...dd..:.......d.:.........: 151- 200.........:.........:.........:.........:.........: pcc hhhphchhhccchchchh cchhch chpchhhhccp AAA AAAAAAAAXXAAAAAAAA AAAAAA AAXXXAAAAAA SDK--LLYQAKLALDEDLRLKVV-----RKMFEL-----RFGEPAPARRS my_fasta_file +| |+ | + + +++|+ +++ + ++ ++ DLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL 3BKB_A AAAXXXXAAAAAAXXXXXXXXXXBBBBBXXXXXXBBBBBXXXXXXAAAAA chchchhpchchhcphphhphhchhphhppcphhhhhhchhpppchhphh 151- 200...dd....:.........:...ddddd.:....ddddd:.........: 201- 250.........:.........:.........:.........:.i.......: hcphcphcppchchphhhhhcphphphppcchchcchccpcphpphhphh AAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAA VEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAA my_fasta_file + ++ + +++ ++ |+ ++ ++ ++ + + + + ++ RTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNC-LVTEKNVL 3BKB_A AAAXXXXXAAAAAAAAAAAAAAAAAAAAXXBBXXXXXXXXB BBXXXXXB cpcphchchcphhphhpchhhphchhcpchhhhcchhhcph hhpccphh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: pphhhphpchhhhhhphhhhhphhhppchhphhhchhc hhchcphhh AAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAA AAXAAAAAA TSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIAD---IIKFDTVVP my_fasta_file +++ | ++ ++ + |++++++ ++| ++ + ++ ++ ++++ + KISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFG 3BKB_A BBXXXXXXBBXXXXBBBXXXXXXXXXXXXXXAAAAAAXBBBAAAAAAAAA chpchphpccchcphhhhppphcphhhchphhchhphpchppcpchhphp 251- 300.........:.........:.........:........ddd........: 301- 350.........:.........:.........:.........:...i.....: chhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchphh AAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXX KAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPP my_fasta_file + ++++ +++ |++ +++ +|+ + + +| +| + + ILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVF-RLMEQC 3BKB_A AAAAAAAXXXXXXXXXXXAAAAAAAAAXXXXXXXXXXXXAAAA AAAAAA hhhhcphphphphhhphpppppcchhccppchhhhchhhchhh chhcph 301- 350.........:.........:.........:.........:.........: 351- 375.........:.........:..... hhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXX APPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file |++|+ + ++ ++ +++ + WAYEPGQRPSFSTIYQELQSIRKRH 3BKB_A XXXXXXXXXXAAAAAAAAAAAAAXX hhhchppchphpphhpchpphccch 351- 375.........:.........:..... The seq2struc alignment: my_fasta_file ---> 2PJR_F align_len=544 ene=-30.00 identity=3.492647 hpc_err=29.411766 size_err=0.000000 ins=0 del=239 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhh hccchphhhh phpph XBBXXXXXXX XXXXXBBBBB XXXBB MTWLPLNPIP--------LKDRVSMIFL-----------------QYGQI my_fasta_file ++ |+ + + + | + LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH 2PJR_F XXXXXXXXXXAAAAAAAAXXXXXBBBBBXXXXXAAAAAAAXAAAAXXXXX hpcphhhhhpccppchhcppcphhhhhhphpppcpchhphchhhhhhcch 1- 50.........:dddddddd.:........ddddddddddddddddd....: 51- 100.........:.........:.........:.........:.........: chhcphhhhhcc p phcphhhhpphhhhh BBXXXBBBBBBX X XXBBBBBXXXXBBBB DVIDGAFVLIDK----T------GIRTHIPVGSVACIM------------ my_fasta_file + + ++ +++++ | ++ VAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRD 2PJR_F XXXXXBBBBBXXAAAAXAAAAAAXXXXXXXXXXXBBBBAAAAAAAAAAAA hhhhphhhhphppchhcchccchpphhpphhcchhhpphhphhhchhccc 51- 100.........:..dddd.dddddd......:........dddddddddddd 101- 150.........:.........:.........:.........:.........: hchppc hp hhhhchhhphpphhhhhpch p BBXXXX XX AAAAAAAAAXXXBBBBBXXX X ----LEPGTR--VS---HAAVRLAAQVGTLLVWVGEA------------G my_fasta_file +++ + + +|+++ ++ + + + ++ IDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKN 2PJR_F XXXXXXXXXXBBXXAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAAAX hcchphpcphphhchpcphphhcphhcccphchcchchcphhpphphhcp 101- 150dddd.....:dd..ddd..:.........:.......dddddddddddd: 151- 200.........:.........:.........:.........:.........: hchh hppph pphcpcchhhphchh h c cchc XBBB BXXXX XXXAAAAAAAAAAAA X X AAAA VRVY------ASGQP---GGARSDKLLYQAKLA-L--D--------EDLR my_fasta_file ++ ++ +++ ++ + +|++|+ | + |+ ELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLF 2PJR_F XXXXAAAAAAXXXXXAAAAAAAAAAAAAAAAAAXXBBXAAAAAAAAAAAA chhhhcphhcchpphhcchhpchhpchppchhcphphchcchhhpphphh 151- 200....dddddd.....ddd.:.........:...d.dd.dddddddd...: 201- 250.........:.........:.........:.........:.........: hc hhcchhchch pch hhhccphcp AA AAAAAAAAAA XXX AAAAAAAAA LK-VVRKMFELRF----------GEP-APARRSVEQ-------------- my_fasta_file + +++ ++++ + |+ +++ + DRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDAD 2PJR_F AAXAAAAAAAAAAXXBBBBXXXXXXXAAAAAAAAAAXXXXXXBBBBBXXX cchhchhhhhphchphhhhcchpcppchphphhcchhcchpphhhhpchc 201- 250..d......:...dddddddddd...d..:......dddddddddddddd 251- 300.........:.........:.........:.........:.........: hcph cppc hchphhhhhcp AAAA AAAA AAAAAAAAAAA -----------LRGI-EGSR----------------VRATYALLAKQ--- my_fasta_file + + + +| ++| ++++ QSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHN 2PJR_F XXXXXXXXXXXAAAAXAAAAXXXXBBBBBXBBXXXXAAAAAAAAAAAXXX pphhchcphchpphhphccchhphchhhhcpphcppcchhphhpchhchp 251- 300ddddddddddd....d...:dddddddddddddddd...:.......ddd 301- 350.........:.........:.........:.........:.........: hphp hppcchchcchccpc phpphhphhpphhhp XXXX XXXXXXXXXXXXXXX AAAAAAAAAAAAAAA ----YGVT--WNGRRYDPKDWEKGD-TINQCISAATSCLYG--------- my_fasta_file ++ +|+ ++ ++ |++ ++ ++ +|+ +++ + VNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRD 2PJR_F XXXXXXXXBBXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXX hpcchcchhpcphcpchhhhhchhpchcchphhhpchcchhccpccchcc 301- 350dddd....dd.........:.....d...:.........:.ddddddddd 351- 400.........:.........:.........:.........:.........: hpchhhhhhphhhhhphhhppchhphhhchhchhchcph AAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAA -----------VTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTV my_fasta_file +++++ | +++ | ++ +++ + + ++ + + ++++ FAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIA 2PJR_F XXXXXXXXXXXAAAAAAAAAXXXXXXXXXXXXXXXXAAAAAAAAAAAAAA hhhhhcpphppchhcchhhchphhhphhpphchhcccchcchhhhhchhh 351- 400ddddddddddd........:.........:.........:.........: 401- 450.........:.........:.........:.........:.........: hhchhchhccphpchc cchchhh cchhc AAAAAAAAAXXXXXXX AAAAAAA AAAAA ----VPKAFEIARRNPGEPD---REVRLAC-------RDIFR-------- my_fasta_file + | +++ + ++ + +++ + NPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGL 2PJR_F XXXXAAAAAAAXXXXXXXXXAAAAAAAAAAXXXXXXXAAAAAXXXXXXXX phccchphhchhphhccphphpphcchhchhhchchphhchhpchchhph 401- 450dddd.....:.........:ddd......:ddddddd..:..dddddddd 451- 500.........:.........:.........:.........:.........: ppcphhchhhhhcchhhhpchp hhhh hcchph AAAAAAAAAAAAAAAAAXXXXX XXXX XXXXXX ----SSKTLAKLIPLIEDVLAAGEIQ---------PPAP-----PEDAQP my_fasta_file + ++ |++++|+ +++ + + ++++ ++ + GAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTI 2PJR_F XXXXAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAXXXXAAAAAXXXXXX phchhphhhhhcpphcphpphpchhphpchhcchhccpphcchhchccph 451- 500dddd.....:.........:......ddddddddd....ddddd.....: 501- 544.........:.........:.........:.........:.... h hhhhhhph pchphcpp X XXXXXXXX XXXXXXXX V------------------AIPLPVSL---------GDAGHRSS my_fasta_file + ++ +++ + +++ + EAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEL 2PJR_F XAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAXXXXXXX chppchcphcchhphpchhcphpcccphhhhhpchhhhpchcch 501- 544.dddddddddddddddddd:.......ddddddddd...:.... The seq2struc alignment: my_fasta_file ---> 2BG9_D align_len=375 ene=-102.00 identity=4.266667 hpc_err=36.533332 size_err=0.000000 ins=5 del=70 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhhccchphhhhphpphchhcp hhhhhccpphcp XBB XXXXXXXXXXXXBBBBBXXXBBBBXXX BBBBBBXXXXBB MTW------LPLNPIPLKDRVSMIFLQYGQIDVIDG--AFVLIDKTGIRT my_fasta_file + + | + ++++| ++ ++ + | |++ + + | + +++ SEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIV 2BG9_D XXXAAAAAAAAAAXXXXXXXXXXXXXXXXBBBXXXXBBBBBBBBXXXXBB pchcpchhhphhcphpchhchhchhphhhchphphphhphhphcchpphh 1- 50...dddddd:.........:.........:......dd.:.........: 51- 100.........:.........:.........:.........:.........: hhhhpphhhh hhchppchphhhh chhhphpphhh h BBBXXXXBBB BBBXXXXXXAAAA AAAAAXXXBBB B HIPVGSVACI--MLEPGTRVSHAAV------RLAAQVGTLLV-------W my_fasta_file +++| ++++ ++++ + ++ ++ + + | ETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDF 2BG9_D BBBBBXXBBBXXXXXXXXXXXAAAAXXBBBBXXXXXXXXBBBXXXXXXXX cpphchcpphhchchchphhchpphcchchhpcchhhhchhhhpphcpch 51- 100.........:dd.......:.....dddddd........:..ddddddd: 101- 150.........:.........:.........:.........:.........: hpchphchhh pp ph pphcpcchhhphc hh BXXXXXBBBB XX XX XXXAAAAAAAAAA AA VGEAGVRVYA---SG---QP-------GGARSDKLLYQAK--------LA my_fasta_file ++ ++ | + ++ + + + AIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWT 2BG9_D XXXXXXBBBBXXXXXBBBXXBBBBBBBXXXXXXXXXXXXXBBBBBBBBXX hhhhhpchhhchppchhhphhhhhcphhchhhphhhhcppphphchphhp 101- 150.........:ddd..ddd.:ddddddd..:.........:dddddddd.: 151- 200.........:.........:.........:.........:.........: hccchc hchhcchhchchpchhh hccphcphcph XXAAAA AAAAAAAAAAAAXXXAA AAAAAAAAAAA LDEDLR---LKVVRKMFELRFGEPAP-----------ARRSVEQLRGI-- my_fasta_file | ++ ++|++ ++ ++ ++ +++ + YDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLD 2BG9_D XXXXXXBBBXXXXXXXXXXXXXXXXXBBBBBBBBBBBXXXXXXXXXXXBB hcppchphphcpcchchpphhcppchhhcchcphchhhhhphhhcphhhc 151- 200......ddd:.........:......ddddddddddd..:........dd 201- 250.........:.........:.........:.........:.........: cppchchphhhhhcphphphppcchchcchccpcphpphhph AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA --------EGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA my_fasta_file +++ + ++ ++ +++ +++ + + + +++ ++ ITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVL 2BG9_D BBBBBBBBXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXAAAAAAAA hphhhhhpchhhhhhhphhhhhhhhphhphhhhhhhpcppcchphphphh 201- 250dddddddd.:.........:.........:.........:.........: 251- 300.........:.........:.iiiii...:.........:.........: hpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhch AAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAA ATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKA my_fasta_file ++ + ++ + + ++ ++++++ + | +++|+ + LSLTVFLLVIVELIPSTSSAV-----PLIGKYMLFTMIFVISSIIVTVVV 2BG9_D AAAAAAAAAAAAAAAAAAAAX XXXXXXAAAAAAAAAAAAAAAAAA hphphhhhhhhchhhpppphh hhhpchhhhphhhhhpphhhphhh 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: hchhccphpchccchchhhcchhcppcphhchhhhhcc hhhhpchphh AAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAA AAAXXXXXXX FEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIED--VLAAGEIQPP my_fasta_file + +| | +++ + +++ + | ++ + +++ +|+ INTHHRSPSTHSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLC 2BG9_D AAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXAAAAAAAA hpphhcphpphphhcphchhhchhcpcccppphhcchchhhhhhchhhhh 301- 350.........:.........:.........:........dd.........: 351- 375.........:.........:..... hhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXX APPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ + ++ + ++++++ VFMLICIIGTVSVFAGRLIELSQEG 2BG9_D AAAAAAAAAAAAAAAAAAAAAAAXX hhhhhhhhpphphhhpchhchppcp 351- 375.........:.........:..... The seq2struc alignment: my_fasta_file ---> 1OQY_A align_len=363 ene=-125.00 identity=3.305785 hpc_err=46.831957 size_err=0.000000 ins=0 del=58 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhh phhhhccchphhhh X BB XXX XXXXXXXXXBBBBB -----------M---TW----LPL-----------NPIPLKDRVSMIFL- my_fasta_file + +++ +++ +++ ++ SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 1OQY_A XXXXBBBBBXXXBBBBBXXXXXXXAAAAAAAAAAAXXXXXXXXXBBBBBX phhphphcphpppphchchchccphchhccchchccpcchhhhhppchhh 1- 50ddddddddddd.ddd..dddd...ddddddddddd....:.........d 51- 100.........:.........:.........:.........:.........: phpph chhcphhhhhc cpphcphhhhpphhh XXXBB BBXXXBBBBBB XXXXBBBBBXXXXBB QYGQI-----------DVIDGAFVLID--------KTGIRTHIPVGSVAC my_fasta_file ++ + |++ + | ++ ++ + +++++ AGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESS 1OQY_A XXXBBXXXXXXXXXXXXXXXXBBBBBBXXXXXXXXXXXXXXXXXXXXXXX hpchhpcchhhcchchcccphhhhhhpcpchppppphhhchphphhhcpp 51- 100.....ddddddddddd...:.......dddddddd....:.........: 101- 150.........:.........:.........:.........:.........: hhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchhh BBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAAA IMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLY my_fasta_file ++ +|++ + + + || + + +++ + + +++ ++++ +++ TSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRE 1OQY_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX pphhhhhppphphhhhhhccccphpccphhppphcphppphhppppppcc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: phchhhccchchchhcchhchchpchhhhccphcphcphcppchchphhh AAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAA QAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYAL my_fasta_file ++ ++++ + +++++++++ |++++++++ + ++ ++| +++ + EDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 1OQY_A XXXXXXXXXXXXAAAAAAAAAXXXXXXAAAAAAAAAXXXXXXAAAAXXXX cchhpphhpppchcphhpchhphphcccchhhhhchphpphhchhchhhp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhphh AAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXX LAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYA my_fasta_file + + ++++++| ++ + ++| ++|+++++ + ++ +++ ++ +++ GIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQ 1OQY_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAXAAAAAAAAXXXX phhpphchchpphpcpphpcphhpchhpcphhchhccphphpphcphhpp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhh phhhppchhphhhchhchhchcphhhchh chhccphpch XXB BBBBXXXXXXAAAAAAAAAXAAAAAAAAA AAAAXXXXXX PAI---GFVHTGKPLSFVYDIADIIKFDTVVPKAF-----EIARRNPGEP my_fasta_file + + + + ++ + ++++++++ ++ + + ++ + NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE 1OQY_A XXXAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXX phhhhhhhhpphppcphphhpphpchpcphhphhpchhpchhchpchcpc 251- 300...ddd...:.........:.........:.....ddddd.........: 301- 350.........:.........:.........:.........:.........: ccchchhhcchhcppcphhchhhhhcchhhhpch phhhhhcchphhhhh XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX XXXXXXXXXXXXXXX DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEI-QPPAPPEDAQPVAIP my_fasta_file + + ++ + +++ +| + ++ + ++ ++++ + + ++ ++++ VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENL 1OQY_A XXXXXXXXXXXXXXXXXXXXAAAAAAAAAAXXXXAAAAAAXXXXXXXXXA hphhpcchhphphhphphpccchhcchchhphhcphhhphhhhhccpcph 301- 350.........:.........:.........:....d....:.........: 351- 363.........:... hhhphpchphcpp XXXXXXXXXXXXX LPVSLGDAGHRSS my_fasta_file ++|+ + AANFLLSQNFDDE 1OQY_A AAAAAAAAAXXXX hhphhhppphccc 351- 363.........:... The seq2struc alignment: my_fasta_file ---> 3DZD_B align_len=368 ene=-125.00 identity=7.065217 hpc_err=44.565219 size_err=0.000000 ins=0 del=63 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhh phhhhccchphhhhph pphchhcphhhh X BBXXX XXXXXXXXXBBBBBXX XBBBBXXXBBBB M---TWLPL-------NPIPLKDRVSMIFLQY------GQIDVIDGAFVL my_fasta_file + + +++ | + + ++ + ++ ++ || KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVL 3DZD_B XBBBBBXXXAAAAAAAAAAAAAAXXBBBBBXXAAAAAAAAAAXXXXBBBB cchhhhccccphppphphhhcccphhhcphcphcchccchcchhhhhhhh 1- 50.ddd.....ddddddd...:.........:..dddddd.:.........: 51- 100.........:.........:.........:.........:.........: hccpphcphhh hpphhhhhhchppchphhhhchhhphpphhhh BBXXXXBBBBB XXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBB IDKTGIRTHIP-------VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVW my_fasta_file ++++++ + + + +++ ++|+ ++++|| + ++++ + DVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLE 3DZD_B BXBBXXBBXXXAAAAAAAAXXXXBBBBBBXXXXXAAAAAAAAXXXXBBBB chhhhcpcphphhchhccpphcphhhhhpphpphcphhchhccphhchhc 51- 100.........:.ddddddd.:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hpch phchhhppphpphcpcchhhphchhhccchch BXXX XXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAA VGEA--------------GVRVYASGQPGGARSDKLLYQAKLALDEDLRL my_fasta_file ++++ ++ + + ++ + + + +++++|++ ++ KPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAK 3DZD_B XXXXAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAAAAAAAAX chhphcchhhphchhhcchpcchhhpcchchhpchhchhchcchhhchhc 101- 150....dddddddddddddd.:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: chhcchhchchpchhhhccphcphcp hc ppchchphhhhhcp AAAAAAAAAAAXXXAAAAAAAAAAAA AA AAAAAAAAAAAAAA KVVRKMFELRFGEPAPARRSVEQLRG---IE-----GSRVRATYALLAKQ my_fasta_file + ++ + +| +++ ++ ++++ ++ ++ ++ |+++++ SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELF 3DZD_B XXXXBBBBXXXXXXAAAAAAAAAAAAXXXXXBBBBBXXXXXXXAAAAAAA pchhhhhppcppppcchhhchhhchppccphhhchphhphhpchhcpchh 151- 200.........:.........:......ddd:.ddddd...:.........: 201- 250.........:.........:.........:.........:.........: hphphppcchc h cchc cpcphpphhphhpphhhphpchh XXXXXXXXXXX X XXXX XXXAAAAAAAAAAAAAAAAAAAA --YGVTWNGRRYD--P----KDWE---KGDTINQCISAATSCLYGVTEAA my_fasta_file + ++ |+++ + +|+ + ++ +++ ++ |++ ++ GHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGS 3DZD_B BBXXXXXXXXXXXBBXAAAAXXXXBBBBBXXXXXXAAAAAAAAAAAAAXB phccphhpphhpcccpchchhcppphhhcchpchcpchphchhchhcppp 201- 250dd.......:...dd.dddd....ddd..:.........:.........: 251- 300.........:.........:.........:.........:.........: hhhhphhhhhp hhhppchhphhhchhchhchcphhhchhc hhcc AAAXXXXXXBB BBBXXXXXXAAAAAAAAAXAAAAAAAAAA AAAX ILAAGYAPAIG---FVHTGKPLSFVYDIADIIKFDTVVPKAFE---IARR my_fasta_file ++ |++++| +| + ++ ++ |+ ++++ ++ ++ FTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPP 3DZD_B BXXXXXXXXBBXXXBBBBBBXXXAAAAAAXXXXXAAAAAAAXXBBBBXXX hpchppppchchchchhphppcphccchccpphccchhhchphhphhhhh 251- 300.........:.ddd.....:.........:.........:...ddd...: 301- 350.........:.........:.........:.........:.........: phpchccchchhhcchhcppcphhchhh hhcchhhhpchphhhhhcchp XXXXXXAAAAAAAAAAAAAAAAAAAAAA AAAAAAAXXXXXXXXXXXXXX NPGEPDREVRLACRDIFRSSKTLAKLIP-LIEDVLAAGEIQPPAPPEDAQ my_fasta_file ++ + + +||+++ + ++| +|+ |+| +++ +++|+ ++++ ++ LRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVREL 3DZD_B XXXXXXAAAAAAAAAAAAAAAAXXXXXXBBXAAAAAAAXXXXXXXAAAAA hcccpcchhhhhchhhcchhcchccphhchpccpcchhhcpchcpphcch 301- 350.........:.........:........d:.........:.........: 351- 368.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file ++ |++ |+|+ + + + KNLIERAVILCEGEVIKP 3DZD_B AAAAAAAAAXXXXXBBXX cphhcchhhhhcpchhch 351- 368.........:........ The seq2struc alignment: my_fasta_file ---> 1QO5_P align_len=368 ene=-147.00 identity=5.706522 hpc_err=35.326087 size_err=0.000000 ins=8 del=63 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hhhccchphhhhphp phchh XBBXXXXX XXXXXXXBBBBBXXX BBBBX MTWLPLNP------------IPLKDRVSMIFLQYG----------QIDVI my_fasta_file ++ | ++ + + + + +++++ AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVEN 1QO5_P XXXXXXXXAAAAAAAAAAAAAXXXXXXBBBBBXXXAAAAAAAAAAXXXXX hhchhhhppcpccchpchhpphhhppcphhhhccphpphppchpchchcp 1- 50........dddddddddddd.........:.....dddddddddd....: 51- 100.........:.........:.........:.........:.........: c phhhhhccpphcphhhhpphhhhhhc hppchphhhhchhhph X XBBBBBBXXXXBBBBBXXXXBBBBBB XXXXXXAAAAAAAAAX D-GAFVLIDKTGIRTHIPVGSVACIMLE------PGTRVSHAAVRLAAQV my_fasta_file ++++ ++ ++++ + ++ + + + + + + + TEENRRQFREILFSVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEK 1QO5_P XAAAAAAAAAAAAXXXXXXXXXBBBBBBXAAAAAXXXXXXXXAAAAAAAX pccpccphcchhhphcpphppphpphhhhhcphhpccpppchhcphhccc 51- 100.d.......:.........:........dddddd.....:.........: 101- 150.........:.........:.........:.........:.........: pphhhhhpchphch hhpp phpphcpcchhhphc XXBBBBBXXXXXBB BBXX XXXXXAAAAAAAAAA GTLLVWVGEAGVRV---YASG---QPGGARSDKLLYQAK----------- my_fasta_file |+ + ++ +|++ ++ |++ ++| +++| GIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAV 1QO5_P XXBBBBBXXXXBBBXXXXXXXBBBXXXXXAAAAAAAAAAXXXXBBBBBBB phhhphchcppphhhhpppccpphpphcphpcchhphcccphchpchchh 101- 150.........:....ddd..:.ddd.....:.........ddddddddddd 151- 200.........:.........:.........:.........:.........: hhhccchchchhcchhchchpch hhhccphcph AAXXAAAAAAAAAAAAAAAAXXX AAAAAAAAAA ---------LALDEDLRLKVVRKMFELRFGEP--------APARRSVEQL my_fasta_file + + ++++ |+ ++ + |+ +++ LRIADQCPSSLAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEH 1QO5_P BBXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXBBBBBBBBBXXXXXXAAA hchhcphhpphhhpcphphhhchhphhpppphhhhhchchhhcpchchch 151- 200ddddddddd:.........:.........:..dddddddd.........: 201- 250.........:.........:.........:.......i.:.........: cphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpphh AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA RGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL my_fasta_file + + |+|+ + +|+ | + | + +|+ + ++++ CQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGH-ACTKKYTPEQVA 1QO5_P AAAAAAAAAAAAAAAAAAXXXXXXXXBBXXXXXXXXX XXXXXXXAAAAA hphhpcchhhhhhchhpchhhhhcpphhchphhphph hhpcchphcphh 201- 250.........:.........:.........:.........:.........: 251- 300.........:......i..:.......ii:......i..:.........: hphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR my_fasta_file +++ | ++ + | | + + | + +| + + + + ++ + MATVTALHRTVPAAVP-GICFLSGGMS--EEDATLN-LNAINLCPLPKPW 1QO5_P AAAAAAAAAAXXXXXX BBBBXXXXXX AAAAAAA AAAAAXXXXXXXX hhphphhhcphhhhhh phhhhppphp ccchphp hphhphhhhhchh 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:......iii:.........: cphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchp XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQ my_fasta_file +++ |+ + ++ ++++ +++ ++++| ++ + ++ KLSFSYGRALQASALAAWGGKAANKEATQEAFMKRA---MANCQAAKGQY 1QO5_P BBBBBBXAAAAAAAAAAAXXXXXXAAAAAAAAAAAA AAAAAAXXXXX chphphpchhphphhhhhppchhpcchppchhhcch hhphphhcpph 301- 350.........:.........:.........:.........:.........: 351- 368.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file +++++ ++ ++ ++ VHTGSSGAASTQSLFTAC 1QO5_P XXXXXXXXXXXXXXXXXX hhppppphhpppphhphh 351- 368.........:........ The seq2struc alignment: my_fasta_file ---> 1FBA_D align_len=368 ene=-147.00 identity=6.793478 hpc_err=37.500000 size_err=0.000000 ins=8 del=63 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hhhccchphhhhphp phchh XBBXXXXX XXXXXXXBBBBBXXX BBBBX MTWLPLNP------------IPLKDRVSMIFLQYG----------QIDVI my_fasta_file +| + ++ + ++ + + +++++ TTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVEN 1FBA_D XXXXXXXXAAAAAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAAAXXXXX pphhphhpcchpcchcchhpchhhhpcphhhhccpphphpcchpchphcp 1- 50........dddddddddddd.........:.....dddddddddd....: 51- 100.........:.........:.........:.........:.........: c phhhhhccpphcphhhhpphhhhhhc hppchphhhhchhhph X XBBBBBBXXXXBBBBBXXXXBBBBBB XXXXXXAAAAAAAAAX D-GAFVLIDKTGIRTHIPVGSVACIMLE------PGTRVSHAAVRLAAQV my_fasta_file +++ ++ |+ + + + ++ + + + + + + + TEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKK 1FBA_D XAAAAAAAAAAAAXXXXXXXXXBBBBBBXAAAAXXXXXXXXXAAAAAAAX pccpcchhcphhhppchchhcphpphhhhhcphhpchccpphhhchhccc 51- 100.d.......:.........:........dddddd.....:.........: 101- 150.........:.........:.........:.........:.........: pphhhhhpchphch hhpp phpphcpcchhhphc XXBBBBBXXXXXBB BBXX XXXXXAAAAAAAAAA GTLLVWVGEAGVRV---YASG---QPGGARSDKLLYQAK----------- my_fasta_file |+ |+ ++ +||+ ++ |++ ++++ +++| GIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCV 1FBA_D XXBBBBBXXXXBBBXXXXXXXBBBXXXXXAAAAAAAAAAXXBBBBBBBBB phhhphchccphhhhhppccchpppphcchhhchhphcccphchhchchh 101- 150.........:....ddd..:.ddd.....:.........ddddddddddd 151- 200.........:.........:.........:.........:.........: hhhccchchchhcchhchchpch hhhccphcph AAXXAAAAAAAAAAAAAAAAXXX AAAAAAAAAA ---------LALDEDLRLKVVRKMFELRFGEP--------APARRSVEQL my_fasta_file ++++ ++++ |+ ++ + |+ +++ + LKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDR 1FBA_D BXXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXBBBBBBBBXXXXXXXAAA hchpcpphphpphhcphphhhchhphhpppchhhhhchchhhcpchchcc 151- 200ddddddddd:.........:.........:..dddddddd.........: 201- 250.........:.........:.........:.......ii:.........: cphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpphh AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA RGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL my_fasta_file + ++ |+|+ + +|+ | + | + +| +++ + AQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQ--SAKKNTPEEIA 1FBA_D AAAAAAAAAAAAAAAAAAXXXXXXXXBBXXXXXXXXX XXXXXXAAAAA hpchpcphhhhhhchhpchhhhhcpphhchphhphpp phccpphcchh 201- 250.........:.........:.........:.........:.........: 251- 300.........:......i..:.......ii:......i..:.........: hphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR my_fasta_file +++ | +++ + | + | + + ++| + +| + + +++ ++ + LATVQALRRTVPAAVT-GVTFLSGGQS--EEEATVN-LSAINNVPLIRPW 1FBA_D AAAAAAAAAAXXXXXX BBBBXXXXXX AAAAAAA AAAAXXXXXXXXX hhphphhccphhhhhp phphhppppp ccchphp hphhpphhhhchh 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:......ii.:.........: cphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchp XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQ my_fasta_file ++++ |+ + + + | + + ++++++++| ++| + + ALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRA--KANGDAAQGKYV 1FBA_D BBBBBBXAAAAAAAAAAAXXXXXXAAAAAAAAAAAA AAAAAAXXXXXX hhphphpchhphphhchhhpcccphhhpppchhcch chppchhppchh 301- 350.........:.........:.........:.........:.........: 351- 368.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file ++ + ++ +++ +++++ AGSAGAGSGSLFVANHAY 1FBA_D XXXXXXXXXXXXXXXXXX hpphphpppphhhhphhh 351- 368.........:........ The seq2struc alignment: my_fasta_file ---> 1FBA_C align_len=368 ene=-147.00 identity=6.250000 hpc_err=38.043478 size_err=0.000000 ins=8 del=63 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hhhccchphhhhphp phchh XBBXXXXX XXXXXXXBBBBBXXX BBBBX MTWLPLNP------------IPLKDRVSMIFLQYG----------QIDVI my_fasta_file +| + ++ + ++ + + +++++ TTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVEN 1FBA_C XXXXXXXXAAAAAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAAAXXXXX pphhphhpcchpcchcchhpchhhhpcphhhhccpphphpcchpchphcp 1- 50........dddddddddddd.........:.....dddddddddd....: 51- 100.........:.........:.........:.........:.........: c phhhhhccpphcphhhhpphhhhhhchppchphhhhchh X XBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAA D----------GAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLA my_fasta_file + +++ ++ ++ + ++++ ++++ + + ++ TEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKKK 1FBA_C XAAAAAAAAAAAAAXXXXXXXXBBBBBBXXXXXXXXXXXXXXAAAAAAAX pccpcchhcphhhppchchhcphpphhhhhcphhpchccpphhhchhccc 51- 100.dddddddddd........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hp hpphhhhhpchphchhhppphpphcpcchhhp AA XXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAA AQ-----VGTLLVWVGEAGVRVYASGQPGGARSDKLLYQ----------- my_fasta_file ++ | + | + + + |++ |++ +|+ +++ + GIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRCV 1FBA_C XXBBBBBXXXXBBBXXXXXXXBBBXXXXXAAAAAAAAAAXXBBBBBBBBB phhhphchccphhhhhppccchpppphcchhhchhphcccphchhchchh 101- 150..ddddd..:.........:.........:.........ddddddddddd 151- 200.........:.........:.........:.........:.........: hchhhccchchchhcchhchchpch hhhccphcph AAAAXXAAAAAAAAAAAAAAAAXXX AAAAAAAAAA -------AKLALDEDLRLKVVRKMFELRFGEP--------APARRSVEQL my_fasta_file ++++ ++++ |+ ++ + |+ +++ + LKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLDR 1FBA_C BXXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXBBBBBBBBXXXXXXXAAA hchpcpphphpphhcphphhhchhphhpppchhhhhchchhhcpchchcc 151- 200ddddddd..:.........:.........:..dddddddd.........: 201- 250.........:.........:.........:.......ii:.........: cphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpphh AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA RGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL my_fasta_file + ++ |+|+ + +|+ | + | + +| +++ + AQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQ--SAKKNTPEEIA 1FBA_C AAAAAAAAAAAAAAAAAAXXXXXXXXBBXXXXXXXXX XXXXXXAAAAA hpchpcphhhhhhchhpchhhhhcpphhchphhphpp phccpphcchh 201- 250.........:.........:.........:.........:.........: 251- 300.........:......i..:.......ii:......i..:.........: hphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR my_fasta_file +++ | +++ + | + | + + ++| + +| + + +++ ++ + LATVQALRRTVPAAVT-GVTFLSGGQS--EEEATVN-LSAINNVPLIRPW 1FBA_C AAAAAAAAAAXXXXXX BBBBXXXXXX AAAAAAA AAAAXXXXXXXXX hhphphhccphhhhhp phphhppppp ccchphp hphhpphhhhchh 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:......ii.:.........: cphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchp XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQ my_fasta_file ++++ |+ + + + | + + ++++++++| ++| + + ALTFSYGRALQASVLRAWAGKKENIAAGQNELLKRA--KANGDAAQGKYV 1FBA_C BBBBBBXAAAAAAAAAAAXXXXXXAAAAAAAAAAAA AAAAAAXXXXXX hhphphpchhphphhchhhpcccphhhpppchhcch chppchhppchh 301- 350.........:.........:.........:.........:.........: 351- 368.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file ++ + ++ +++ +++++ AGSAGAGSGSLFVANHAY 1FBA_C XXXXXXXXXXXXXXXXXX hpphphpppphhhhphhh 351- 368.........:........ The seq2struc alignment: my_fasta_file ---> 1ZCA_A align_len=331 ene=-99.00 identity=3.625378 hpc_err=45.619336 size_err=0.000000 ins=13 del=26 begin1=0 begin2=0 1- 50.........:.....iiiii...iiii..:ii.......:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ + |+ + + + ++ +|++ ++ ++ + + RLVKILLLGAGESGK-----STF----LKQ--MRIIHGREFDQKALLEFR 1ZCA_A XXBBBBBBBXXXXXA AAA AAA AAAAAXXXXXAAAAAAAA chhchhhhphpcppc pph hcp hchhhpcchcpchhhchc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpc hphchhhppphpphcp BBBBBXXXXXXAAAAAAAAAXXXBBBBBXX XXXBBBBXXXXXXXAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGE----AGVRVYASGQPGGARS my_fasta_file ++ +++ +|+ | ++ |+ + + + + + ++++ + DTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMAFENKAGLPVEP 1ZCA_A AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXAAAAAAAAXXXXXXXXXXXA cphhcphhcppchhhchccchphhhphpcpcchphhhhhhcpchphhhch 51- 100.........:.........:.........:dddd.....:.........: 101- 150.........:.........:.........:.........:.........: cchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchc AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAA DKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVR my_fasta_file + + + + +++++ + + + + + ++ ++++ + + ++ ++| +++ ATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNY 1ZCA_A AAAAAAAAAAAAAAAXAAAAAAAAXXXXXXXXXAAAAAAAXAAAAXXXXX hphphhhhhhphhhccpphcchhpccpchphpcphchhhcphcchpphph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:........ii.........:.........: hphhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhh AAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAA ATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAIL my_fasta_file +++++ ++ +++ |+++++++ |++ + + +++ + + + FPSKQDILLARKATKGIVEHDFVIKKIP--FKMVDVGGQRSQRQKWFQCF 1ZCA_A XXXAAAAAAXXXXXXXBBBBBBBBXXBB BBBBBBXXXAAAAXXXXXXX hhpcpchhhhcchpcphhchchhhcchh hchhchpppcppcpchhphh 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpch AXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXX AAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEP--- my_fasta_file +++++ + ++ ++++ +|++ +++ + ++++ + + + DGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSII 1ZCA_A XXXXBBBBBBBXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXBBB cphpphhhhhpppchcphhhccccppchhcphphhcphhppchhhphphh 201- 250.........:.........:.........:.........:.......ddd 251- 300.........:.........:.........:.........:.........: ccchchhhcch hcppcphhchhhhhcchhhhpchp XAAAAAAAAAA AAAAAAAAAAAAAAAAAAAXXXXX ----DREVRLACRDI-----------FRSSKTLAKLIPLIEDVLAAGEIQ my_fasta_file + + +++ + + ++ ++++++ | + +++ + LFLNKMDLLVEKVKSVSIKKHFPDFKGDPHRLEDVQRYLVQCFDRKRRNR 1ZCA_A BBBBXAAAAAAAAAAXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXX hhhpchchhhcchcphphcchhhchcpchhchcchpchhhphhcccccpc 251- 300dddd.....:.....ddddddddddd...:.........:.........: 301- 331.........:.........:.........:. hhhhh cchph hhhhhhhphpchphcpp XXXXX XXXXX XXXXXXXXXXXXXXXXX PPAPP---EDAQP-VAIPLPVSLGDAGHRSS my_fasta_file ++ |++ ++|+ + + + + SKPLFHHFTTAIDTENIRFVFHAVKDTILQE 1ZCA_A XXXXXBBBXXXXXAAAAAAAAAAAAAAAAAX pchhhhhhpphhcpcphchhhhhhccphhpc 301- 331.....ddd.:...d.....:.........:. The seq2struc alignment: my_fasta_file ---> 2QYO_B align_len=352 ene=-116.00 identity=6.250000 hpc_err=42.897728 size_err=0.000000 ins=0 del=47 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhphhhhccchphhhhphpphchhcphhhhhccpphcphhh XBBX XXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBB MTWL-----PLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIP my_fasta_file + ++ + | + + +++++ ++ + |+ +|++++ + NNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLS 2QYO_B XXXXAAAAAAAAAAAAAAAXXAAAAAAAAAAAAXXAAAAAAAAXXXBBAA ppcchpchhchphhhhcphhhhhcphphchphchphhphhhphpchhphp 1- 50....ddddd:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hpphhhhhhchppchphhhhchhhphpphhhh hpchphchhh XXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBB BXXXXXBBBB VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVW----VGEAGVRVYA---- my_fasta_file ++++ + + + ++++ | |++|+ + + ++ NLVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVAS 2QYO_B AAAAAAXXXXXXAAAAAAAAAAAAAXXXBBBBXXXXXXXXXXBBBBXAAA phhphhphhppchcphpchhchhhhpphhchhpppchcpccchhhhphhp 51- 100.........:.........:.........:..dddd...:......dddd 101- 150.........:.........:.........:.........:.........: ppphpphcpcchhh phch hhccchch chhcchhchchpchh XXXXXXXAAAAAAA AAAA AXXAAAAA AAAAAAAAAAAXXXA ----SGQPGGARSDKLLY--QAKL--ALDEDLRL-KVVRKMFELRFGEPA my_fasta_file | +++ +++++ ++++ + ++ +++ |+ |++ ELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDL 2QYO_B AXXXXXXXXXXAAAAAAAXXAAAAXXXXXAAAAAXXXXXXAAAAAAXXXA chhhcppchhhhhhhchhhchphppphhphcchhhccchphhhhphphch 101- 150dddd.....:........dd....dd...:....d....:.........: 151- 200.........:.........:.........:.........:.........: hhccph cphcphcppchchphhhhhcphph phppcchchcchccpc AAAAAA AAAAAAAAAAAAAAAAAAAAAXXX XXXXXXXXXXXXXXXX PARRSV--EQLRGIEGSRVRATYALLAKQYGV--TWNGRRYDPKDWEKGD my_fasta_file +++ + |++ + ++ + + + +++ + |+ ++ ++ WEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNG 2QYO_B AAAAAAXXXXAAAAAAAAAAAAAAAAAAAXXXAAAAXXXXBBBBBXXXXX hchhpcphchpphhpchhhpcpchhphhhcchphhhcphcphhchppppp 151- 200......dd.:.........:.........:..dd.....:.........: 201- 250.........:.........:.........:.........:.........: phpphhphhpphh hphpchhhhhhphhhhhphhh ppchhphhh AAAAAAAAAAAAA AAAAAAAAAAXXXXXXBBBBB XXXXXXAAA TINQCISAATSCL---YGVTEAAILAAGYAPAIGFVH--TGKPLSFVY-- my_fasta_file |+ |++++++| ++ ++ ++ +++++ |+ ++++ ++ + TTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAV 2QYO_B AAAAAAAAAXXXXBBBBBBXAAAAXXXXXXXXBBBBBXXXXXXXXXXXBB pppchhhcphhchphhhhcchchhcphhpppphphhppchhhphhchchh 201- 250.........:...ddd...:.........:.......dd:........dd 251- 300.........:.........:.........:.........:.........: chhchhc hcphhhchhchhccphpchcc c hchhhcchh AAAAAAX AAAAAAAAAAAAAXXXXXXXA A AAAAAAAAA ---DIADIIK-FDTVVPKAFEIARRNPGEPDR------E--VRLACRDIF my_fasta_file + ++ +|+ + ++++++++ + + + + +++ + LLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQL 2QYO_B BBBXXXXXXXAAAAAAAAAAAAAAXXXXXXXXBBBBBBXBBXXXXXXAAA hhchhhhchpccchhchhcchcchhppcpccpchhhhchhhpcccccpph 251- 300ddd......:d........:.........:..dddddd.dd........: 301- 350.........:.........:.........:.........:.........: cppcphhchhhhhcchhh hpchphhhhhcchphhhhhhhhphpchphc AAAAAAAAAAAAAAAAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSSKTLAKLIPLIEDVLA--AGEIQPPAPPEDAQPVAIPLPVSLGDAGHR my_fasta_file +|+| + + + +++ + | + ++ |+ +|+ + |+ +++ TQIKLLMNVTISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEI 2QYO_B AAAAAAAAAAAAXXXXXXBBAAAAAAAAAAXXXXBBBBBBXXXXXBBBBB pphchhhphphphhppcccpccchcchhhchphpchchphhpphhphhch 301- 350.........:........dd.........:.........:.........: 351- 352.. pp XX SS my_fasta_file ++ YP 2QYO_B BX hh 351- 352.. The seq2struc alignment: my_fasta_file ---> 3C7K_C align_len=325 ene=-95.00 identity=5.846154 hpc_err=42.461538 size_err=0.000000 ins=14 del=20 begin1=0 begin2=0 1- 50.........:.....iiiii...iiii..:iiii.....:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ | ++++++| ++ + |+ | ++ + ++ KLLLLGAGESGKSTI-----VKQ----MKI----IHEDGFSGEDVKQYKP 3C7K_C XBBBBBXXXXXAAAA AAA AAA AAXXXXXXXXAAAAAA chhhhphpcppcpph hcp hch hhccphppcchcphch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhh pchphchhhppphpphc BBBBBXXXXXXAAAAAAAAAXXXBBBBB XXXXXBBBBXXXXXXXA CIMLEPGTRVSHAAVRLAAQVGTLLVWV-----GEAGVRVYASGQPGGAR my_fasta_file + ++ + ++ +++++ ++++ + +++|+++ + + VVYSNTIQSLAAIVRAMDTLGVEYGDKERKTDSKMVCDVVSRMEDTEPFS 3C7K_C AAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAXXXXXXXXX hhhppphpphhhhhchhcphphchpcccccpcpchhhchhpchccpchhp 51- 100.........:.........:........ddddd......:.........: 101- 150.........:...i.....:.........:.........:.........: pcchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppch AAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAA SDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRV my_fasta_file + +|+ + | +| +++ ++| +|+ ++ ++ ++| + AELLSAMMRLWGD-SGIQECFNRSREYQLNDSAKYYLDSLDRIGAGDYQP 3C7K_C AAAAAAAAAAAXX AAAAAAAXXXXXXXXXXXAAAAAXXAAAAAXXXXXX hchhphhhchhpc pphpchhpcpcchphpcphchhhcphcchphpchph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: chphhhhhcphphph ppcchchcchccpcphpphhphhpphhhphpc AAAAAAAAAAXXXXX XXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAA RATYALLAKQYGVTW---NGRRYDPKDWEKGDTINQCISAATSCLYGVTE my_fasta_file + + |++ ++ + ++ ++ +++++ + + ++ ++++ ++ TEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVT 3C7K_C XAAAAAXXXXXXXXXBBBBBBXXXXBBBBBBXXXXXXXAAAAXXXXXXXX pcpchhcpchcppphhcphhphcphhhchhchpppcpcccchhhhhcchp 151- 200.........:.....ddd.:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhhhphhhhhphhhppchhphhhchhchhchcp hh hc AAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAA AA AA AAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDT------VV-----PK my_fasta_file | | + ++ + | ++ + + + +++ ++ AIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLN 3C7K_C BBBBBXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXBBBBBXX hhhhhhhhpphcphhhcccpppchhcphhhhcphhppchhhcpphhhhhp 201- 250.........:.........:.........:.....dddddd..ddddd.: 251- 300.........:.........:.........:.........:.........: hhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchph h AAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXX X AFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQP-P my_fasta_file ++ +++ + +++++ + |+ |++++ ++++ ++ + KKDLFGEKIKKSPLTICFPEYPGSNTYEDAAAYIQTQFESKNRSPNKEIY 3C7K_C XAAAAAXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXXBB ccchhpcchccphhphhhhchhpppphcchhhhhppphcpcpcphpcchh 251- 300.........:.........:.........:.........:........d: 301- 325.........:.........:..... hhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXX APPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +| ++++ + |+++++ +++ CHMTCATDTNNIQVVFDAVTDIIIA 3C7K_C BBXXXXXXAAAAAAAAAAAAAAAAX hhhphhpcppphphhhchhpchhhh 301- 325.........:.........:..... The seq2struc alignment: my_fasta_file ---> 2ZD9_C align_len=305 ene=-107.00 identity=6.885246 hpc_err=34.754097 size_err=0.000000 ins=71 del=0 begin1=0 begin2=0 1- 50iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii.:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++ --------------------------------------FL-----RIYA- 2ZD9_C XX XXXX hh chhh 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:iiiiiiiiiiii.iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file |+ +|+ | ++|| + + +| ++ | -----PLNAVLAAPGLLAVA------------A----LTIPDMSGRSRLA 2ZD9_C XAAAAXAAAAAAAAA A XXXXXXXAAAAAA hhphhhhhhphhhhh h hphhchppcpchh 51- 100.........:.........:.........:.........:.........: 101- 150......i..:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +|+|| +++++ + +++ ++| + ++ + | + + ++++|+ + LAALLA-VIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAF 2ZD9_C AAAAAA AAAAAAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAAAAAAAAA hhhhhh hhhphhhhphhhphhccchphhcccphchhhchhhhhhhhhhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ||+ ++++ + |+ + ++ + + + + + ++| ++ LLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVV 2ZD9_C AXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAXAAAAAAAAAAAAAA hhcpphchphhhhhhhhchhccpphhhhhpchhhpchcphhphpphhphh 151- 200.........:.........:.........:.........:.........: 201- 250...iii...:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file | | +++ ++++++ + ++++ + + ++ +|++| + + LFA---VALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSF 2ZD9_C AAA AAAAAAAAAXXXXXXXXXXAAAAAAAAAAAAXXXXXXXXXXXXA hhh hhhhhhhhccchphcchpphhphhhhhhhphpppphpcphhpph 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...ii....:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + +++ + + +++ + + + +++ + + ++ + + ++ AGRVLAGAVMMSGIGIFGLWAGI--LATGFYQEVRRGDFVRNWQLVAAVP 2ZD9_C AAAAAAAAAAAAAAAAAAAAAAA AAAAXAAAAXXXXXXXXXXXXXXXX hpchhhphhhhpphphhphhhph hhpphhpchccpchhcphphhhhhh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + + LFQKL 2ZD9_C XXXXX hhpch 301- 305..... The seq2struc alignment: my_fasta_file ---> 1KFU_L align_len=699 ene=156.00 identity=2.145923 hpc_err=22.174536 size_err=0.000000 ins=0 del=394 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhh XBB XXXXXXXX ----------------------MTW-----------------LPLNPIPL my_fasta_file ++ + + + AGIAAKLAKDREAAEGLGSHERAIKYLNQDYEALRNECLEAGTLFQDPSF 1KFU_L XXAAAAAAAAAAAAAXXXXXXXXBBXXXXXAAAAAAAAAAAXXXXXXXXX hphhhchhcccchhcphpphcchhchhppchchhcpchhchpphhpchph 1- 50dddddddddddddddddddddd...ddddddddddddddddd.......: 51- 100.........:.........:.........:.........:.........: ccchphhhhphpphchhcphhhhhcc pphcphhhhpphhhhhhchp XXXXBBBBBXXXBBBBXXXBBBBBBX XXXBBBBBXXXXBBBBBBXX KDRVSMIFLQYGQIDVIDGAFVLIDK----TGIRTHIPVGSVACIMLEPG my_fasta_file +++ | + ++ +++ ++ + ++++ | +|+++++ ++ PAIPSALGFKELGPYSSKTRGMRWKRPTEICADPQFIIGGATRTDICQGA 1KFU_L XXXXXXXXXXXXXXXXXXXXXBBBBXAAAAXXXXXXXXXXXXXXXBBXXX hhhhphhphcchphhppcpcphchcchpchhhchphhhpphpcpchhpph 51- 100.........:.........:......dddd.........:.........: 101- 150.........:.........:.........:.........:.........: pch phhhhc hhhp hpp hhhhh pch XXX XAAAAA AAAA XXX BBBBB XXX TRV---SHAAVR----LAAQ-------------VGT--LLVWV-GEA--- my_fasta_file + + + | ++ + + + + + LGDCWLLAAIASLTLNEEILARVVPLNQSFQENYAGIFHFQFWQYGEWVE 1KFU_L XXXAAAAAAAAAXXXXAAAAXXXXXXXXXXXXXXXXBBBBBBBXXXXBBB hpchhhhhhhhphphpcchhhchhhhppphpcphhphhhhphhphpchhc 101- 150...ddd...:..dddd...:ddddddddddddd...dd.:...d...ddd 151- 200.........:.........:.........:.........:.........: ph ch hh p pphpphcpcchhhphch hhccc XX BB BB X XXXXXXAAAAAAAAAAA AXXAA ----GV--RV--YA--S--GQPGGARSDKLLYQAKL---------ALDED my_fasta_file + + + + + + +|++|+++ ++ +++ VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATT 1KFU_L BBBBXXBBBBXXBBXXXBBXXXXXXAAAAAAAAAAAXXXXXXXXXXXXAA hhhccchhpccpchhhhhphcppchhphhhcchhhchpphhchhppphpp 151- 200dddd..dd.:dd..dd.dd:.........:......ddddddddd....: 201- 250.........:.........:.........:.........:.........: hchch hcchhchch AAAAA AAAAAAAAA LRLKV-----------------VRKMFELRF------------------- my_fasta_file + + +| ++ EGFEDFTGGIAEWYELKKPPPNLFKIIQKALQKGSLLGCSIDITSAADSE 1KFU_L AAAAAXXXXBBBBBBXXXXXXXAAAAAAAAAXXXXBBBBBXXXXXXXXXX cphcchppphhchhchcchhhphhchhpchhpcpphhphphchpphhcpc 201- 250.....ddddddddddddddddd.......:.ddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file AITFQKLVKGHAYSVTGAEEVESNGSLQKLIRIRNPWGEVEWTGRWNDNC 1KFU_L XXXXXXXXXXXXBBBBBBBBBXXXXXXBBBBBBBXXXXXXXXXXXXXXXX hhphpchhcphhhphpphcchcpppphpchhchcphhpchchppchpcph 251- 300dddddddddddddddddddddddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: pchhhhc XXXAAAA -----GEPAPAR-------------------------------------- my_fasta_file + |+++ PSWNTIDPEERERLTRRHEDGEFWMSFSDFLRHYSRLEICNLTPDTLTSD 1KFU_L XXXXXXXXAAAAXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXXXXXXXX hphpphchccccchpcchccpchhhphpchhchhpchchhphphcphppc 301- 350ddddd....:..dddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: cphcphcphc AAAAAAAAAA ----------------------------------------RSVEQLRGIE my_fasta_file + + + TYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDEEDG 1KFU_L XXXXXXXXXXXBBBXXXXXXXXXXXXXXXXXXXXXXBBBXXXXXXXXXXX phcchchpchcpphccppphpphcphhpphhhphphhhchcccccccccp 351- 400dddddddddddddddddddddddddddddddddddddddd.........: 401- 450.........:.........:.........:.........:.........: ppch chphhhhhcphphph ppcchchcchccpcph AAAA AAAAAAAAAAXXXXX XXXXXXXXXXXXXXAA GSRV--------RATYALLAKQYGVTW-------NGRRYDPKDWEKGDTI my_fasta_file | ++++++ + ++ ++ + ++++ + ESGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELSGQTNIHLSKN 1KFU_L XXXXBBBBBBBBXXXXXXXXXXXXXXXBBBBBBBXXXXXXXXXXXXXXAA cpphphhhphhpchcccpcchpcchhphphphhchhcchppppphhhpcp 401- 450....dddddddd.......:.......ddddddd.....:.........: 451- 500.........:.........:.........:.........:.........: pphh phhpphhhphp ch hhhh hphhhh h AAAA AAAAAAAAAAA AA AAAA XXXXXX B NQCI---SAATSCLYGVT--EA---AILA--------AGYAPA------I my_fasta_file ++ + ++ + ++ + +++ FFLTNRARERSDTFINLREVLNRFKLPPGEYILVPSTFEPNKDGDFCIRV 1KFU_L AAAAXXXXXXXXXXXXXXBBXXBBBXXXXBBBBBBBBXXXXXXBBBBBBB hhhppchcccpcphhphcchhpchchhhpchhhhhpphchpccpchhhch 451- 500....ddd..:........dd..ddd....dddddddd..:...dddddd: 501- 550.........:.........:.........:.........:.........: ph hh ppchhphhhchhchh c hc BB BB XXXXXXAAAAAAAAA X AA GF-----VH----------------TGKPLSFVYDIADII-----K--FD my_fasta_file ++ + + +|+ ++ + FSEKKADYQAVDDEIEANLEEFDISEDDIDDGVRRLFAQLAGEDAEISAF 1KFU_L BBXXXXXBBXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXXXXXXBBAA hpccchchphhccchchphcchchpccchccphcchhhphhpcchchphh 501- 550..ddddd..dddddddddddddddd....:.........:ddddd.dd.: 551- 600.........:.........:.........:.........:.........: phhhchhch hccphpchccchchhhcc hhcppcp AAAAAAAAA AAXXXXXXXAAAAAAAAA AAAAAAA TVVPKAFEI----ARRNPGEPDREVRLACRD------------IFRSSKT my_fasta_file +++ + + + + +|+++ +| +++++++ ELQTILRRVLAKRQDIKSDGFSIETCKIMVDMLDSDGSGKLGLKEFYILW 1KFU_L AAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAXXXXXXXXBBXXAAAAAAA chpphhcchhhccpchcpcphphcphchhhchhcpcpppchphcchhhhh 551- 600.........dddd......:.........:.dddddddddddd......: 601- 650.........:.........:.........:.........:.........: hhchhhhhcch hhh pch phhhhhcch p AAAAAAAAAAA AAX XXX XXXXXXXXX X LAKLIPLIEDV------LAA--GEI----QPPAPPEDA-----------Q my_fasta_file +++++ +++++ +++ ++ +++|+ + + TKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQLHQVIVARFA 1KFU_L AAAAAAAAAAAXXXXXXXXXBBXXXAAAAXXXXXXXXXAAAAAAAAAAAX pchpchpchhcchchccppphpphchcchhcchphchhhphhphhhhchh 601- 650.........:.dddddd..:dd...dddd:........ddddddddddd: 651- 699.........:.........:.........:.........:......... hhhh h hhhphpchphc pp XXXX X XXXXXXXXXXX XX PVAI--P---------------------LPVSLGDAGHR--------SS my_fasta_file +++ + +|+ +| ++ DDQLIIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELDLISWLCFSVL 1KFU_L XXXXBBXAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAXX ccphhhchcphhchhhchcphhchhcphchcpppphchchhphhhhphh 651- 699....dd.ddddddddddddddddddddd.:.........dddddddd.. The seq2struc alignment: my_fasta_file ---> 2HAU_B align_len=676 ene=109.00 identity=3.402367 hpc_err=20.414202 size_err=0.000000 ins=0 del=371 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph h hhphhhhccch phhhh X BB X XXXXXXXXXXX BBBBB M----TW-L------------PLNPIPLKDRV-SMIFL------------ my_fasta_file + + + + | + + KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIA 2HAU_B XBBBBBBXXAAAAAAAAAAAAXXXXXXXXXXXBBBBBBXXXAAAAAAAAA cphchhhhpchchpchpphcchhcphhhpcphphhhhcchphhchhchhh 1- 50.dddd..d.dddddddddddd........:..d.....dddddddddddd 51- 100.........:.........:.........:.........:.........: phpphc hhcp hhhhhc cpph cphhh XXXBBB BXXX BBBBBB XXXX BBBBB ---QYGQID----------VIDG--AFVLID-----KTGI----RTHIP- my_fasta_file ++++++ | ++ + + ++ + ANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKK 2HAU_B XXXXXXBBBXAAAAAAAAXXXXXBBBBBBBBXXXXXXXXXBBBBBBBBBX hpchchhphchphhhchhhhhpphchhhhchhppccchpphhhhhhhhcc 51- 100ddd......dddddddddd:...dd....:.ddddd...:dddd.....d 101- 150.........:.........:.........:.........:.........: hpphhhhhhchppchp h hhhchhhp XXXXBBBBBBXXXXXX A AAAAAAAA ---------VGSVACIMLEPGTRVS-----H-----------AAVRLAAQ my_fasta_file +| ++| ++++ +++ +++ |++ DSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANF 2HAU_B XXXXXXXXXXXXXBBBXXXXXXXXXAAAAAAXXXXXXXXXXXAAAAAAAA cpphphpphcpccphhpphpcphphphhhphhhhchhchcchhcchhhph 101- 150ddddddddd:.........:.....ddddd.ddddddddddd.......: 151- 200.........:.........:.........:.........:.........: hpphh hhhpchphchhhppphpphcpcchhhphch h XXXBB BBBXXXXXBBBBXXXXXXXAAAAAAAAAAA A VGTLL---------VWVGEAGVRVYASGQPGGARSDKLLYQAKL---A-- my_fasta_file + + + + + | ++ + + ++ |+ + FSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVA 2HAU_B XXXBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAXXXXBB hppphhhhhcppchhphhphhhphphpphpphhphpphhchhccphpchh 151- 200.....ddddddddd.....:.........:.........:....ddd.dd 201- 250.........:.........:.........:.........:.........: hccchch chhc chh ch XXAAAAA AAAA AAA AA ---LDEDLRL---KVVR--------------------KMF----EL---- my_fasta_file + + | +| + FVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVA 2HAU_B BBBXXAAAAAXXXAAAAXXBBBBBXXXBBBBXXXXXXXXXBBBBXXBBBB hhchpphhcphhpchcccphchhhhcppcchhcchcchhhhphhphphhh 201- 250ddd......:ddd....dddddddddddddddddddd..:dddd..dddd 251- 300.........:.........:.........:.........:.........: chpch hhhccphcphcp AAXXX AAAAAAAAAAAA -RFGEP---APARRSVEQLRG----------------------------- my_fasta_file | + +++ ++|+++ RSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFL 2HAU_B BXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXBBB cphppccchhhchhpphpchhpcccpcchphhpphhpcchhhccphhphh 251- 300d.....ddd:.........:.ddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: hcppc hchphhhhhcphphphppcchchcc hc AAAAA AAAAAAAAAAAXXXXXXXXXXXXXX XX -------IEGSR-VRATYALLAKQYGVTWNGRRYDPKD-----WE----- my_fasta_file +++ ++| +++ +|++ ++ + |+ KVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERL 2HAU_B BXXXXXXAAAAAXAAAAAAAAAAAXXXXXXXXXXXXXXBBBBBXXAAAAA chhhchchchhhphchhphhcphccpphhchhpcchchhchhhhphhcch 301- 350ddddddd..:..d......:.........:........ddddd..ddddd 351- 400.........:.........:.........:.........:.........: cpcphpph hphhpphhh phpchhhhh XXXAAAAA AAAAAAAAA AAAAAAAAA -KGDTINQC-----------ISAATSCLY----------GVTEAAILA-- my_fasta_file + +++ + + + +++ |+++ ++ KCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCG 2HAU_B AAAAAAAAAXXXBBBBBXXXAAAAAAAAAXXXXXXBBBXAAAAAAAAAXX chcchphpphpchchhphcppcchhhchhppchchhphcpphhhhhpchp 351- 400d........ddddddddddd.........dddddddddd:........dd 401- 450.........:.........:.........:.........:.........: hphhh h h phhh XXXXX X B BBBB -----------------AGYAP---A---I--------------GFVH-- my_fasta_file +++|+ + + | LVPVLAENYDKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTA 2HAU_B BBBBBBBBXXXXXXXXXXXXXXBBBXBBBBXXXXXXXXXXXXXXBBBBXX hhhhhhcphccpcphccphchphhhhhhhccphpchphcphcpccphhph 401- 450ddddddddddddddddd..:..ddd.ddd:dddddddddddddd....dd 451- 500.........:.........:.........:.........:.........: ppchhphhhchh XXXXXXAAAAAA -TGKPLSFVYDIA------------------------------------- my_fasta_file +++ ++ VGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGL 2HAU_B XXXXXXXAAAAAAXXXXXXXXXXXXXXXBBBXXXXXXXXXXXXXXXXXXX hpcphphphhhphhhpchphhchcchhpcphhhppcccpphhchhhppph 451- 500d........:...ddddddddddddddddddddddddddddddddddddd 501- 550.........:.........:.........:.........:.........: chhchcphhhchh AAAXAAAAAAAAA --------DIIKFDTVVPKAF----------------------------- my_fasta_file + +++|+ NLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKN 2HAU_B XXXXXXXXXXXXAAAAAAAAAXXXXXBBBXXXXXXXXXXXXXXXXXXXXX phhchppccphhphpphhchhhccpchhhhchpphhpppppcphchhhcp 501- 550dddddddd.:.........:.ddddddddddddddddddddddddddddd 551- 600.........:.........:.........:.........:.........: chhccp hpc hccchchhhcchh AAAAXX XXX XXAAAAAAAAAAA --------------------EIARRN---PGE-----PDREVRLACRDIF my_fasta_file + ++++ | + +| | + +++++ LNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 2HAU_B XXXXXBBBBXXXXXXXXXXXXXXXXXBBBXXXBBBBBXXXAAAAAAAAAA hpccchchhhhcppcchhcchhphhhhchhphhhhpccccchhhhchhcp 551- 600dddddddddddddddddddd......ddd:..ddddd..:.........: 601- 650.........:.........:.........:.........:.........: cppcphhchhhhhcchhhhpchphhhhhcchph hhhhhh h AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXX XXXXXX X RSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQP----VAIPLP-----V- my_fasta_file +++++ ++ + + ++ |+ ++++ + QQHLFGSDVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDRNTYEKYLGE 2HAU_B AAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBXXXXXXAAAAAXA pphhhppchpchppphhhhcpcpcchhhcccphhhhchhccpphcchhpc 601- 650.........:.........:.........:...dddd..:...ddddd.d 651- 676.........:.........:...... phpchphc pp XXXXXXXX XX -------SLGDAGHR---------SS my_fasta_file | + + EYVKAVGNLRKCSTSSLLEACTFRRP 2HAU_B AAAAAAAXXXXXXXXAAAAAAAAAXX chhchhpphcchpppphhchhphcch 651- 676ddddddd..:.....ddddddddd.. The seq2struc alignment: my_fasta_file ---> 1SUV_F align_len=350 ene=-97.00 identity=4.285714 hpc_err=46.571428 size_err=0.000000 ins=5 del=45 begin1=0 begin2=0 1- 50iiii.....:.........:...i.....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhp XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXX MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVG--- my_fasta_file |++ ++++ +| | + + ++ + + + +| +++ + ----PDPLQDECKAVKWCALGHH-ERLKCDEWSVTSGGLIECESAETPED 1SUV_F XXXXXXXXXXBBBBBBXAA AAAAAAAAAAAAXXXBBBBBBXXAAA hchhpcchchhchhhhphh cchchcchphpppphhchcphcphcc 1- 50.........:.........:.........:.........:.......ddd 51- 100.........:.........:.........:.........:.........: phhhhhhchppchphhhhchhhphpp hhhhhpchphchhhppphpph XXBBBBBBXXXXXXAAAAAAAAAXXX BBBBBXXXXXBBBBXXXXXXX --SVACIMLEPGTRVSHAAVRLAAQVGT-LLVWVGEAGVRVYASGQPGGA my_fasta_file ++ +++++++ ++ |+ |+| |+ + ++ + ++++ +|+ CIAKIMNGEADAMSLDGGYVYIAGQCGLVPVLAENYESTDCKKAPEEGYL 1SUV_F AAAAAAXXXXXXBBBXAAAAAAAAAXXXBBBBBBBXXXXXXXXXXXXXBB hhhchhppchchhphcpphhhhhpphphhhhhhcphcppchcchhccphh 51- 100dd.......:.........:........d:.........:.........: 101- 150.........:.........:.........:.........:.........: cpcchhhphchhhccchchchhcchhchchpchhhhccphcphc phcpp AAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAA AAAAA RSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLR-GIEGS my_fasta_file +++ ++ +++ ++ | +|+++++ ++|++ + + + + ++ + + SVAVVKKSNPDINWNNLEGKKSCHTAVDRTAGWNIPMGLLYNRINHCRFD 1SUV_F BBBBBBXXXXXXXXXXXXXXBBBBXXXXXXXXXAAAAAAAAAAAXXXXAA phhhhccpphchphpphcpccphhphhccphphphhhphhhpchphhchc 101- 150.........:.........:.........:.........:....d....: 151- 200.........:.........:.........:.........:.........: chch phhhhhcphphphppcchchcchccpcphpphhphhpphhhph AAAA AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAA RVRA---TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGV my_fasta_file ++ + ++++ ++ ++ +++ +++ + ++++ +++ ++|+ EFFRQGCAPGSQKNSSLCELCVGPSVCAPNNREGYYGYTGAFRCLVEKGD 1SUV_F AAXXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAXXX chhcpphhhpppcppphhchhhphphhhhppccphhphpphhchhhccpc 151- 200....ddd..:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: pchhhhhhphhhhhphhhppchhp hhhch hchhchcphhh AAAAAAAXXXXXXBBBBBXXXXXX AAAAA AAAAXAAAAAA -----TEAAILAAGYAPAIGFVHTGKPLS----FVYDI-ADIIKFDTVVP my_fasta_file + +++|++++++ + +|++ + + ++ + + VAFVKSQTVLQNTGGRNSEPWAKDLKEEDFELLCLDGTRKPVSEAHNCHL 1SUV_F BBBBBXXAAAAAXXXXXXXXXXXXXXXXXBBBBXXXXXBBBXXXXXXXXX hhhhcppphhpppppcppchhhcchcccchchhhhcppcchhpchhphhh 201- 250ddddd....:.........:.........dddd.....d:.........: 251- 300.........:.........:.........:.........:.........: chhchhccphpchccchchhhcchhcppc phhchhhhhcchhhhpchph AAAAAAAXXXXXXXAAAAAAAAAAAAAAA AAAAAAAAAAAAAAXXXXXX KAFEIARRNPGEPDREVRLACRDIFRSSK-TLAKLIPLIEDVLAAGEIQP my_fasta_file ++ ++ ++++ + ++ +++++++ + + + ++ +++++ + + AKAPNHAVVSRKDKAACVKQKLLDLQVEFGNTVADCSSKFCMFHSKTKDL 1SUV_F BBBXXXBBBBXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXX hchhphhhhpcccchhhhcpchhchphchppphhchppchhhhhpcpcch 251- 300.........:.........:.........d.........:.........: 301- 350.........:.........:.........:.........:.........: hhhhcch phhhhh h hhphpch phcpp XXXXXXX XXXXXX X XXXXXXX XXXXX PAPPEDA----QPVAIP-----L---------PVSLGDA------GHRSS my_fasta_file ++ + ++++++ + + + + + LFRDDTKCLVDLRGKNTYEKYLGADYIKAVSNLRKCSTSRLLEACTFHKH 1SUV_F XXXXXXXBBBBXXXXXXAAAAAXAAAAAAAAAXXXXXXXAAAAAAXXXXX hhcccpchhhchcpcpphcchhphchhchhpphcchpppchhchhphhch 301- 350.......dddd......ddddd.ddddddddd.......dddddd....: The seq2struc alignment: my_fasta_file ---> 2G9D_A align_len=342 ene=-127.00 identity=4.385965 hpc_err=45.614034 size_err=0.000000 ins=2 del=37 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcp hhhhp XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBB BBBXX MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRT---HIPVG my_fasta_file + ++ + + ++ ++ ++ ++ +| + + +++ + KSLFRQSFLFDSLDLDHPMVAQTVRTEQGVTLKLHQRGVLEVIPAQTDAA 2G9D_A XXXXXXXXXXXXXXXXXXXXXBBBBXXXXXBBBBBBXXBBBBXXXXXXXX cphhcpphhhcphchchhhhhpphcpcpphphchhpcphhchhhhppchh 1- 50.........:.........:.........:.........:..ddd....: 51- 100.........:.........:.........:.........:.ii......: phhhhhhc hppchphhhhchhhphpphhhhhpchphchhhppphpphcp XXBBBBBB XXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAA SVACIMLE-PGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARS my_fasta_file ++ ++ + + ++|+++ ++ + ++| + ++ + TKNMVISCGIHGDETAPMELLDKWIDDIVSGFQPVAERCLF--IMAHPQA 2G9D_A XXBBBBBBXXXXXXXAAAAAAAAAAAAAAXXXXXXXXBBBB BXXXAAA pcphhhphphhpccphhhchhcchhcchhpphphhhcchhh hhhhhph 51- 100........d:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: cchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchc AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAA DKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVR my_fasta_file ++ +++++ |++ + + + ++ ++++ +++++ + + + + ++ TVRHVRFIEQNLNRLFDDKPHTPSTELAIADNLKVLLRQFFANTDEHSRW 2G9D_A AAXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXBB phchhchhcpphpchhccchhphppchhhhcphchhhcphhhppcchpch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hphhhhhcphphphppcchchcchccpcphpphhphh pph AAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAA AAA ATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAA----------TSC my_fasta_file ++ |+ + ++ +++++++ ++ ++++ +++ +++ HLDLHCAIRGSKHYSFAVSPKARHPVRSRSLMQFIEQAHIEAVMLSNAPS 2G9D_A BBBBBBBXXXXXXXXBBBBXXXXXXXXXAAAAAAAAAXXXXBBBBXXXXX hhchhhhhcppchhphhhphchchhhcpcphhphhcphhhchhhhpphhp 151- 200.........:.........:.........:.......dddddddddd..: 201- 250.........:.........:.........:.........:.........: hhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchh AAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAA LYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIA my_fasta_file +++++++|+ |++| + ++++ + + |+ + ++++ +++++ STFSWYSAEHYAAQALTLELGQVARLGENLLDRLLAFDLAMRDLISRHKP 2G9D_A XXAAAAAAAAAXXBBBBBBBBBXXXXXXXXXXXXAAAAAAAAAAAAXXXX pphphhphchhhhphhphchpphhchpcphhcchhhhchhhcchhpchch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: ccphpch ccchchhhcchhcppcphhchhhhhcchhhhpc AXXXXXX XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX RRNPGEP----------DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGE my_fasta_file ++| + +++ + |+++ + ++|+ ++ + +++ + EHLPRKSVMYRVSRTIVRLHDDFDFRFSDDVENFTAFMHGEVFGHDGDKP 2G9D_A XXXXXXXBBBBBBBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX chhhccphhhchpcphhchhcchchchpcchcphphhhhpchhphcpcch 251- 300.......dddddddddd..:.........:.........:.........: 301- 342.........:.........:.........:.........:.. hphhhhhc chphhhhhhh hp hpchphcpp XXXXXXXX XXXXXXXXXX XX XXXXXXXXX IQPPAPPE---DAQPVAIPLP--------VS--LGDAGHRSS my_fasta_file + ++++| + ++ ++ | |+ ++ LMAKNEGEAIVFPNRKVAIGQRAALMVCKVNTRYEDDQLVYD 2G9D_A XXXXXXXXBBBXXXXXXXXXXBBBBBBBBXXBBBXXXXBBBX hhhcpcpchhhhhpcchhhppchhhhhhchppchcccphhhc 301- 342........ddd........:.dddddddd:.dd......:.. The seq2struc alignment: my_fasta_file ---> 1PC3_B align_len=337 ene=-134.00 identity=7.121662 hpc_err=45.994064 size_err=0.000000 ins=4 del=32 begin1=0 begin2=0 1- 50.ii......:.........:.........:.........:.........: hphhhhphhhhccchphhhhph pphchhcphhhhhccp ph XBBXXXXXXXXXXXXBBBBBXX XBBBBXXXBBBBBBXX XX MTWLPLNPIPLKDRVSMIFLQY---------GQIDVIDGAFVLIDKT-GI my_fasta_file +++ ++ + + +++++ ++ + + + + | + V--ATTPASSPVTLAETGSTLLYPLFNLWGPAFHERYPNVTITAQGTGSG 1PC3_B X XXXXXXXXBBBBBBBXXXXAAAAAAAAAAAAAAXXXBBBBXXXXAAA h hpphhpphhphhcpppphhhhhhphhphhhhcchhphphphpppppp 1- 50.........:.........:..ddddddddd........:.......d.: 51- 100.........:.........:.ii......:.........:.........: cphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppp BBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXX RTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQ my_fasta_file + + ++++ + +++ ++ | ++ ||++|+ + +++++ |+ ++ AGIAQAAAGTVNIGASDAYLS--EGDMAAHKGLMNIALAISAQQVNYNLP 1PC3_B AAAAAAAAXXXXBBBBXXXXX AAAAAAXXXBBBBBBBBBBBBBBBXXX hphhphhhpphphphpchhhp cpchhhhcphhphhhhhphpphphphh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hpphcp cchhhphchhhccchchchhcchhchchpchhhhc c ph XXXXAA AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAA A AA PGGARS--DKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPAR--R--SV my_fasta_file ++ +++ + +|+ ++ + +++ +++ +|++|+ + |+ GVSEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLPGTAVVPLHRSD 1PC3_B XXXXXXBBXAAAAAAAAAXXXXXXXXAAAAXXXXXXXXXXXXXBBXBBXX phpchhchppchhhhhhppphcphcchphhhhphphphhpphhhhhhcpc 101- 150......dd.:.........:.........:.........:...dd.dd.: 151- 200.........:.........:.........:.........:.........: cphcphcppchchphhhhhcphphphppcchchcchccp cphpphhph AAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXX XAAAAAAAA EQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKG--DTINQCISA my_fasta_file + ++ ++ ++ +++ + +++|++ ++ + + GSGDTFLFTQYLSKQDPEGWGKSPGFGTTVDFPAVPGALGENGNGGMVTG 1PC3_B XXAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXBBXAAAAAAAA pppcphhhpphhpcpchcphpcphphppphchhhhhphhpcppppphhpp 151- 200.........:.........:.........:.........dd........: 201- 250.........:.........:.........:.........:.........: hpphhh phpchhhhhhphhhhhphhhppc hhphhhchhchhc AAAAAA AAAAAAAAAXXXXXXBBBBBXXX XXXAAAAAAAAAX ATSCLY------GVTEAAILAAGYAPAIGFVHTGK--PLSFVYDIADIIK my_fasta_file + + + ++++++ +++| ++|+++++ | ++++|+ CAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLLPDAQSIQAAAAG 1PC3_B AAAXXXBBBBBBXXXAAAAAAXXXBBXBBBXXXXXBBXXXAAAAAAAAAX hhcphphhhhhphphhcphppcphpchphpppppphhhhchpphphhhhp 201- 250......dddddd.......:.........:.....dd..:.........: 251- 300.........:.........:.........:.........:.........: hcphhhchhchhccphpchccchc hhhcchhcppcphhchhhhh AAAAAAAAAAAAAXXXXXXXAAAA AAAAAAAAAAAAAAAAAAAA FDTVVPKAFEIARRNPGEPDREVR------LACRDIFRSSKTLAKLIPLI my_fasta_file |+ ++|++++|+++ +++|| + + + ++ ++ +++++ | FASKTPANQAISMIDGPAPDGYPIINYEYAIVNNRQKDAATAQTLQAFLH 1PC3_B XXXXXXXXXXXXXXXXXXXXXXXXBBBBBBBBBXXXXXAAAAAAAAAAAA hhpcphhpphhphhcphhhcphhhhphchhhhppcpcchhphpphphhhh 251- 300.........:.........:....dddddd.........:.........: 301- 337.........:.........:.........:....... cchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ +++ ++ ++++ + |+++ +++|| WAITDGNKASFLDQVHFQPLPPAVVKLSDALIATISS 1PC3_B AAXXXXXXAAAAXXXXXXXXXAAAAAAAAAAAAAXXX hhhpcppchphhcphhhphhhhhhhchpchhhhphpp 301- 337.........:.........:.........:....... The seq2struc alignment: my_fasta_file ---> 1I6Q_A align_len=689 ene=134.00 identity=3.483309 hpc_err=22.351234 size_err=0.000000 ins=0 del=384 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhh hphhhhccchphhhh X BBXX XXXXXXXXXXBBBBB ----M---TWLP-----------LNPIPLKDRVSMIFL------------ my_fasta_file + ++++ + ++ ++++ + ASKKSVRWCTTSPAESKKCAQWQRRMKKVRGPSVTCVKKTSRFECIQAIS 1I6Q_A XXXXXBBBBBXXAAAAAAAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAX hpccphchhppphhcpcchhphpcchcchcphphphhccppchchhphhp 1- 50dddd.ddd.:..ddddddddddd......:........dddddddddddd 51- 100.........:.........:.........:.........:.........: phpphc hhcp hhhh hc cpp h cphhh XXXBBB BXXX BBBB BB XXX X BBBBB ---QYGQID----------VIDG---AFVL-ID-KTG--I----RTHIP- my_fasta_file ++++++ + + + + ++ + TEKADAVTLDGGLVYDAGLDPYKLRPIAAEVYGTENQPQTHYYAVAIAKK 1I6Q_A XXXXXXBBBXAAAAAAAXXXXXXBBBBBBBXBBXXXXBBXBBBBBBBBBX pcchchhphcpphhhchphchhchchhhhchhppcpphpphhhhhhhhcc 51- 100ddd......dddddddddd:...ddd...:d..d...dd:dddd.....d 101- 150.........:.........:.........:.........:.........: hpphhhh XXXXBBB ---------VGSVACI---------------------------------- my_fasta_file +|+++| GTNFQLNQLQGLKSCHTGLGRSAGWNIPMGLLRPFLDWTGPPEPLQKAVA 1I6Q_A XXXXXXXXXXXXXBBBXXXXXXXXXXXAAAAXAAAAXXXXXXXXAAAAAA ppphphpphpphcphhpphpcphphphhhphhchhhchpphhchhpchhh 101- 150ddddddddd:......dddddddddddddddddddddddddddddddddd 151- 200.........:.........:.........:.........:.........: hh chppchp hhh BB BXXXXXX AAA -----ML--------------------------EPGTRVS-------HAA my_fasta_file + + + + + KFFSASCVPCVDGKEYPNLCQLCAGTGENKCACSSQEPYFGYSGAFKCLQ 1I6Q_A AAXXXBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAA chhphphhhhhcpcchhphhphhhpppcpchhhpppchhhphpphhchhp 151- 200ddddd..dddddddddddddddddddddddddd......:ddddddd..: 201- 250.........:.........:.........:.........:.........: h chhhp hpp hh hhh pchphchh A AAAAA XXX BB BBB XXXXXBBB V-----------RLAAQ------VGT---LL---VWV-----GEAGVRVY my_fasta_file + + + | +++ | + ++ DGAGDVAFVKDSTVFESLPAKADRDQYELLCPNNTRKPVDAFQECHLARV 1I6Q_A AXXXXBBBBBXXAAAAAXXXXXXXXXBBBBBXXXBBBXXXXXXXXXXBBB cphpchhhhccpphhcphhhchcccphchhhhpppcchhchhpchhhhch 201- 250.ddddddddddd.....dddddd...ddd:.ddd...ddddd.......: 251- 300.........:.........:.........:.........:.........: hpp phpph cpcchhhphchh BXX XXXXX AAAAAAAAAAAA ASG-----QPGGA---RSDKLLYQAKLA---------------------- my_fasta_file |+ |+ ++ +| +++ + PSHAVVARSVNGKEDLIWKLLVKAQEKFGRGKPSAFQLFGSPAGQKDLLF 1I6Q_A BXXBBBBBXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXX hphhhhhcphppccchhhchhhchpcchpcpchphhphhpphhppcchhh 251- 300...ddddd.:...ddd...:........dddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: h c cchchch hcchhchchp X X AAAAAAA AAAAAAAAAX --------------L-----D-EDLRLKV-----VRKMFELRFG------ my_fasta_file + + ++ + +++| KDSALGLLRIPKKIDSGLYLGSNYITAIRGLRETAAEVELRRAQVVWCAV 1I6Q_A XXXXXXBBBXXXXXXAAAAAXAAAAAAAAXXXXXAAAAAAAAAXBBBBBB ccphhphhchhcchcpphhhppphhphhcphccphhchchcchphhhhhh 301- 350dddddddddddddd.ddddd.d.......ddddd.....:....dddddd 351- 400.........:.........:.........:.........:.........: c hhhhccphcph cphcppchc hphhh X XAAAAAAAAAA AAAAAAAAA AAAAA E---PAPARRSVEQL-----------RGIEGSRVR----------ATYAL my_fasta_file + + ++ |+ +++++|+ + | GSDEQLKCQEWSRQSNQSVVCATASTTEDCIALVLKGEADALSLDGGYIY 1I6Q_A XAAAAAAAAAAAAAAXXXBBBBBBXXAAAAAAAAAXXXXXXBBBXAAAAA ppccphchpchpcppppphhhhphpppcchhhhhhcpchchhphcpphhh 351- 400.ddd.....:.....ddddddddddd...:.....dddddddddd....: 401- 450.........:.........:.........:.........:.........: hhcp hphphpp cchchcchcc AAAA XXXXXXX XXXXXXXXXX LAKQ---------------------YGVTWNG--------RRYDPKDWEK my_fasta_file | +++ | ++|++ | IAGKCGLVPVLAESQQSPESSGLDCVHRPVKGYLAVAVVRKANDKITWNS 1I6Q_A AAAAXXXBBBBBBBBXXXXXXXXXXXXXXXXXBBBBBBBBXXXXXXXXXX hhpchphhhhhhcpppphcppphchhhchhcphhhhhhhcchpcchphpp 401- 450....ddddddddddddddddddddd....:..dddddddd.........: 451- 500.........:.........:.........:.........:.........: pc phpphhphhpphhhphpchhhhhhphhhhhphhh XX AAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBB GD-----TINQCISAATSCLYGVTEAAILAAGYAPAIGFVH--------- my_fasta_file + ++++++ |++ | +++++++ ++ ++ LRGKKSCHTAVDRTAGWNIPMGPLFKDTDSCRFDEFFSQSCAPGSDPRSK 1I6Q_A XXBBBBBXXXXXXXXXXXXXAAAAXXXXXXXXXXXXBBBBBXXXXXXXXX hcpccphhphhccphphphhhphhhccpcphchcchhppphhhppchcpc 451- 500..ddddd..:.........:.........:.........:.ddddddddd 501- 550.........:.........:.........:.........:.........: ppchhphhhc hhch XXXXXXAAAA AAAA -----------------------TGKPLSFVYD------------IADI- my_fasta_file +|++++|+ + ++ LCALCAGNEEGQLKCVPNSSERLYGYTGAFRCLAENVGDVAFVKDVTVLD 1I6Q_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXBBBBBXAAAAX hhhhhhppccpphchhhpppcchhphpphhchhhcphpchhhhcchphhc 501- 550ddddddddddddddddddddddd......:...dddddddddddd....d 551- 600.........:.........:.........:.........:.........: hchc phhhchhchhccphpchc cch c AXAA AAAAAAAAAAAXXXXXXX AAA A --------------IKFD----TVVPKAFEIARRNPGEPD--REV----R my_fasta_file +++| + ++ +++ + + +++ + + | NTDGKGTEQWAKDLKLGDFELLCLNGTRKPVTEAESCHLPVAPNHAVVSR 1I6Q_A XXXXXXXXXXXXXXXXXXBBBBXXXXXXXXXXXXXXXXXXBBXXXBBBBX ppcpcppcphhcchchpchchhhhpppcchhpchcphhhhhhhphhhhpc 551- 600dddddddddddddd....dddd.......:.........:dd...dddd: 601- 650.........:.........:.........:.........:.........: hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhh AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXX LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIP------ my_fasta_file ++++ | +++++ ++ ++ | + +++ ++ +++ IDKVAHLRQVLLRQQAHFGRNGEDCPGKFCLFQSKTKNLLFNDNTECLAK 1I6Q_A XXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBB hcchhhhcphhhcpphhhpcppcchhpchhhhppcpcphhhpcppchhhc 601- 650.........:.........:.........:.........:....dddddd 651- 689.........:.........:.........:......... hhhphp c hph cpp XXXXXX X XXX XXX LPVSLG-----D-------------AGH--------RSS my_fasta_file |++ + + + ++ LQGKTTYDEYLGPQYVTAIAKLRRCSTSPLLEACAFLMR 1I6Q_A XXXXXXAAAAAXAAAAAAAAAAAAAXXXAAAAAAAAXXX hppcpphcchhphphhphhhchcchppphhhchhhhhhc 651- 689......ddddd.ddddddddddddd...dddddddd... The seq2struc alignment: my_fasta_file ---> 2PMS_B align_len=334 ene=-95.00 identity=5.389221 hpc_err=41.017964 size_err=0.000000 ins=3 del=29 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccp phcphhhhp XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXX XXBBBBBXX --MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKT-GIRTHIPVG my_fasta_file + + + ++ + ++ + + ++ ++++++ + + +++++ RRRSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAE 2PMS_B XXXXBBBBBXXAAAAAAAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAAX cccphphhhhpphchpchhphpcphcchcphhhphhcccphhphhphhhc 1- 50dd.......:.........:.........:.........:d........: 51- 100.........:.........:.........:.........:.........: phhhhhhchppchphhhhchhh phpphhhhhpchp h chhhpp XXBBBBBBXXXXXXAAAAAAAA AXXXBBBBBXXXX X BBBBXX SVACIMLEPGTRVSHAAVRLAA-QVGTLLVWVGEAG--V-----RVYASG my_fasta_file +|+ +++| + ++|+ + + ++ +| + |+ + +| + | NRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKG 2PMS_B XXXXXBBBXAAAAAAAAXXXXXBBBBBBBBBBXXXXBBXBBBBBBBBBXX pchchhphcpphhhchphhhhchchhhhchhppccphcphhhhhhhhccp 51- 100.........:.........:..d......:......dd.ddddd.....: 101- 150.........:.........:.........:.........:.........: phpphcpcchh hphchhhccchchchhcchhchchpchhhhccphc XXXXXAAAAAA AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAA QPGGARSDKLL----YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVE my_fasta_file ++ + +| + ++ + + + |+ ++++ ++++ GSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVAR 2PMS_B XXXXXXXXXXXBBBBXXXXXXXXXAAAAAAAXXXXXXXXXXXXAAAAAAA pphphpchpphcphhpphccphphphhhpphchhhphpphhchhchhhhc 101- 150.........:.dddd....:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: phcphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpp AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAA QLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATS my_fasta_file + +++++ + + + + + + + +|+++ FFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRD 2PMS_B AXXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAX hhphphhhphccpphhphhchhhpppcpchhhpppchhhphpphhchhcc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.....iii.:.........: hhhp hpchhhhhhp hhhhhphhhppchhphhhchhchhchcphh AAAA AAAAAAAAXX XXXXBBBBBXXXXXXAAAAAAAAAXAAAAA CLYG-----VTEAAILAAG-YAPAIGFVHTGKPLSFVYDIADIIKFDTVV my_fasta_file + + + ++ + ++++++ ++ ++ |+ |+++ GAGDVAFIRESTVFEDLSDEAERDEYELLCPDNTR---KPVDKFKDCHLA 2PMS_B XXXXBBBBBXXAAAAAXXXAAAAXXBBBBXXXXXB BBXXXXXXXXXB phpchhhhccpphhcchpcchcccchchhhhcppc chhcchcchhhh 201- 250....ddddd:.........d.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hchhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchph AAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXX PKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQP my_fasta_file ++ ++ ++ ++ + + + + + + ++|+ + +++++ +| + RVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDL 2PMS_B BBBXXBBBBBXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXX chhphhhhhcphppccchhhphhcphpcchpcccphchphhpphpppcch 251- 300.........:.........:.........:.........:.........: 301- 334.........:.........:.........:.... hhhhcch phhhhh hhhphpchphcpp XXXXXXX XXXXXX XXXXXXXXXXXXX PAPPEDA----QPVAIP----LPVSLGDAGHRSS my_fasta_file ++ + +| +|+ |++ + |++ + LFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLR 2PMS_B XXXXXXXBBBBXXXXXXAAAAAAAAAAAAAAAAX hhccphhphpchhhchcpphhhppphhphhpphc 301- 334.......dddd......dddd........:.... The seq2struc alignment: my_fasta_file ---> 1H45_A align_len=327 ene=-103.00 identity=5.198777 hpc_err=38.532111 size_err=0.000000 ins=6 del=22 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccp phcphhhhp XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXX XXBBBBBXX --MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKT-GIRTHIPVG my_fasta_file + + + ++ + ++ + + ++ ++++++ + + +++++ RRRSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAE 1H45_A XXXXBBBBBXXAAAAAAAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAAX cccphphhhhpphchpchhphpcphcchcphhhphhcccphhphhphhhc 1- 50dd.......:.........:.........:.........:d........: 51- 100.........:.........:.........:.........:.........: phhhhhhchppchphhhhchhh phpphhhhhpchp h chhhpp XXBBBBBBXXXXXXAAAAAAAA AXXXBBBBBXXXX X BBBBXX SVACIMLEPGTRVSHAAVRLAA-QVGTLLVWVGEAG--V-----RVYASG my_fasta_file +|+ +++| + ++|+ + + ++ +| + |+ + +| + | NRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKG 1H45_A XXXXXBBBXAAAAAAAAXXXXXBBBBBBBBBBXXXXBBXBBBBBBBBBXX pchchhphcpphhhchphhhhchchhhhchhppccphcphhhhhhhhccp 51- 100.........:.........:..d......:......dd.ddddd.....: 101- 150.........:.........:.........:.........:.........: phpphcpcchh hphchhhccchchchhcchhchchpchhhhccphc XXXXXAAAAAA AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAA QPGGARSDKLL----YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVE my_fasta_file ++ + +| + ++ + + + |+ ++++ ++++ GSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDWTGPPEPIEAAVAR 1H45_A XXXXXXXXXXXBBBBXXXXXXXXXAAAAAAAXXXXXXXXXXXXAAAAAAA pphphpchpphcphhpphccphphphhhpphchhhchpphhchhchhhhc 101- 150.........:.dddd....:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: phcphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpp AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAA QLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATS my_fasta_file + +++++ + + + + + + + +|+++ FFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRD 1H45_A AXXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAX hhphphhhphccpphhphhchhhpppcpchhhpppchhhphpphhchhcc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:......iiiiii.......: hhhp hpchhhhhhp hhhhhphhhppchhphhhchhchhchcph AAAA AAAAAAAAXX XXXXBBBBBXXXXXXAAAAAAAAAXAAAA CLYG-----VTEAAILAAG--YAPAIGFVHTGKPLSFVYDIADIIKFDTV my_fasta_file + + + ++ + ++++ + ++ + +|| GAGDVAFIGESTVFEDLSDEAERDEYELLCPDNTRK------PVDKFKDC 1H45_A XXXXBBBBBXXAAAAAXXXAAAAXXBBBBBXXXBBB BXXXXXXX phpchhhhpcpphhcchpcchcccchchhhhcppcc hhcchcch 201- 250....ddddd:.........dd........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhchhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchp AAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXX VPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQ my_fasta_file ++ ++ +++ + + + + +|+++ ++ +++ +| HLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ 1H45_A XXBBBBXXBBBBBXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXX hhhchhphhhhhcphppccchhhphhcphpcchpcccphchphhpphppp 251- 300.........:.........:.........:.........:.........: 301- 327.........:.........:....... hhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXX PPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ |++ + ++ | ++ + | KDLLFKDSAIGFSRVPPRIDSGLYLGS 1H45_A XXXXXXXXXXBBBBXXXXXXAAAAAXX cchhhccphhphpchhhchcpphhhpp 301- 327.........:.........:....... The seq2struc alignment: my_fasta_file ---> 3FCS_B align_len=690 ene=166.00 identity=2.608696 hpc_err=20.724638 size_err=0.000000 ins=0 del=385 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchph XBBXXXXXXXXXXXXBB ----------------------MTWLPLNPIPLKDRVSM----------- my_fasta_file +| ++ || ++++ GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCA 3FCS_B XXXXXXXXXXXXAAAAAAAXXXXBBBXXXXXXXXXXXBBXAAAAAAXXXX phphhppcphpphpphhhhphhhhhhpcchhhhpphchchccphhccphh 1- 50dddddddddddddddddddddd.......:.........ddddddddddd 51- 100.........:.........:.........:.........:.........: hhhphp phch h cphhhhhccpph cphh BBBXXX BBBB X XXBBBBBBXXXX BBBB ---IFLQYG--QIDV------------I--DGAFVLIDKTGI----RTHI my_fasta_file |+ + ++ + + +++++ + PESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNF 3FCS_B XXXBBXXXXBBBBBBXXXXXXXXXXXXXBBXXBBBBBBXXXXBBBBBBBB hcphchhhpchchhccchhpccpppcppphpphphpchhhchchccpcph 51- 100ddd......dd....dddddddddddd.dd.........:..dddd...: 101- 150.........:.........:.........:.........:.........: h hpph hhhhhc h ppchp hhhhchhhphpp hhh B XXXX BBBBBB X XXXXX AAAAAAAAAXXX BBB P--VGSV--ACIMLE----P------GTRVS-HAAVRLAAQVGT---LLV my_fasta_file + | | + + ++++ + ++ ||+| +|+ SIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLR 3FCS_B BXXXXXXBBBBBBBBXXXXXAAAAAAXXXXXAAAAAAAAAAXXXBBBBBB phphcphcchhhchhhhhchphphccchhphpphppchhpphcchppphc 101- 150.dd....dd:.....dddd:dddddd...:.d.......:....ddd..: 151- 200.........:.........:.........:.........:.........: hh pchphchhhppphp phcpcch BB XXXXXBBBBXXXXX XXAAAAA WV-------------------GEAGVRVYASGQPG--------GARSDKL my_fasta_file + +++ + + + +++ | IGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQV 3FCS_B BBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBBBXXAAAAA hphphhhcchhphhhhhphhchhcphhhchcpphhhhhphchhhphpcph 151- 200..ddddddddddddddddddd........:.....dddddddd......: 201- 250.........:.........:.........:.........:.........: hhp hchhhccchchchhcc hhch AAA AAAAXXAAAAAAAAAA AAAA LYQ--------AKLALDEDLRLKVVRK-MFEL------------------ my_fasta_file +++ +++|+++ +++ ++ ++ TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 3FCS_B AAAXXXXXXXXXXXXXXAAAAAAAAAAXAAAAXXXXXXBBBBBBBBXXXX pchpcchccpphpcpcchhcpphchhhphphhccchphcpchphhhhhpp 201- 250...dddddddd........:.......d.:..dddddddddddddddddd 251- 300.........:.........:.........:.........:.........: chpch hhhccp AAXXX AAAAAA --------------------------------RFGEP----APARRS--- my_fasta_file ++ + + DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS 3FCS_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAXXX chcphhhhcpchhphhphpcpphhhppcphhphppphchhphphhpcchp 251- 300dddddddddddddddddddddddddddddddd.....dddd......ddd 301- 350.........:.........:.........:.........:.........: hcphcphcpp chchphhhhhcp AAAAAAAAAA AAAAAAAAAAAA ----------VEQLRGIEGS---------------RVRATYALLAKQ--- my_fasta_file +| + + + ++ +| + QKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGK 3FCS_B BBBBBBBXXXAAAAAAAAAAXXXXBBBBBXXXXXXAAAAAAAAAAAAXXX pcphphhhhhpcphhphhpphpchhhppphphhphcppphhphhhchhpc 301- 350dddddddddd.........:ddddddddddddddd....:.......ddd 351- 400.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file IRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIE 3FCS_B BBBBBBXXXXXBBBBBBBBXXXXXBBBXXXBBXXXXXXXBBBBBBBBBBX hcpchchchcchhcchphphphphhppchhhphcphhphchpcphphphc 351- 400dddddddddddddddddddddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file AKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNN 3FCS_B XXXXXXBBBBBBBBXXXXXXBBBBBBBXXXXXXXXXXXXXXXXXXXXXBB hchcphhpccccphphchhphccphhhphphchchhhphphchpphchpp 401- 450dddddddddddddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: hphphppcchc hcch cc XXXXXXXXXXX XXXX XX ---------------------------YGVTWNGRRYD---PKDW---EK my_fasta_file | + +++ +++ GNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGE 3FCS_B BBXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBXXXXBBBXX pppphchphhchphphhppphchpccchchpppcchphccpphhhppcpc 451- 500ddddddddddddddddddddddddddd..:........ddd....ddd.: 501- 550.........:.........:.........:.........:.........: pcphpphhphhpphhhphpchhhhhhphh hh h ph h XXAAAAAAAAAAAAAAAAAAAAAAAXXXX XX B BB B GDTINQCISAATSCLYGVTEAAILAAGYA----PA---I---GF-----V my_fasta_file ++++ + +++ +++ + + + ++ + + CLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCD 3FCS_B XXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBBXXBBBBXXXBBXXXXXB hhhpphhhhppchpchppchhchcchphhchcpchhpphpphphpchhhc 501- 550.........:.........:.........dddd..ddd.ddd..ddddd: 551- 600.........:.........:.........:.........:.........: h ppc hh phhhchhchhchcphhhchhchh B XXX XX XAAAAAAAAAXAAAAAAAAAAAA H---------------TGK---PL---SFVYDIADIIKFDTVVPKAFEIA my_fasta_file + ++ | ++ + + +++ +++++ SDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEK 3FCS_B BXXXXXXXXXXXXXXXXXXBBBXXBBBXXXXXXXXXXXXXXXXXXXXXXX pchpphhhphppcpcphhpppphhhppcpchchpphhhhphpphpcphcc 551- 600.ddddddddddddddd...ddd..ddd..:.........:.........: 601- 650.........:.........:.........:.........:.........: ccphpchccchchhhcchhcppcphhc hhhhhcchhhhpc hp AXXXXXXXAAAAAAAAAAAAAAAAAAA AAAAAAAAAAXXX XX RRNPGEPDREVRLACRDIFRSSKTLAK---LIPLIEDVLAAGE-----IQ my_fasta_file ++ + + ++ + ++++ +| ++ |+ +++ + CPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGK 3FCS_B XXXXXXXXXXXXXXXXXXXXXXXXXXXBBBXXXXXXXXXXXXXBBBBBXX hhphhchhphccchhchcchccphhhccpphpchhccchcphcchccppc 601- 650.........:.........:.......ddd.........:...ddddd.: 651- 690.........:.........:.........:.........: hh hhhcchphh hhhhh hph pchphcpp XX XXXXXXXXX XXXXX XXX XXXXXXXX PP------APPEDAQPV---AIPLP--VSL--GDAGHRSS my_fasta_file + +++ + ++ +++++ + + DAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECCKG 3FCS_B XXBBBBBBXXXXXXXXXBBBXXXXXBBXXXBBXXXXXXXX chhphphcpccchhhchphhccpppcphhhhhcchchhcp 651- 690..dddddd.:.......ddd.....dd..:dd.......: The seq2struc alignment: my_fasta_file ---> 2OM7_L align_len=683 ene=107.00 identity=2.928258 hpc_err=22.986823 size_err=0.000000 ins=0 del=378 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhh phhhh ccch phhhhph pphch XBBXXX XXXXX XXXX BBBBBXX XBBBB MTWLPL--------NPIPL------------KDRV-SMIFLQY-GQIDV- my_fasta_file +++|++ + + + + +++ + + | EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFM 2OM7_L XXXXXXBBBBBBBBXXXXXAAAAAAAAAAAAXXXXBBBBBBXXBBBBBBX chchcchcphphhhhhchpcppppcchhhhppchhchpchhcphhphchh 1- 50......dddddddd.....dddddddddddd....d...:...d.....d 51- 100.........:.........:.........:.........:.........: h cp hhhhhccpphcp hhhhpphhh X XX BBBBBBXXXXBB BBBXXXXBB ------I----------DG-AFVLIDKTGIRT---------HIPVGSVAC my_fasta_file + ++ + + +++ + + +|+ +| EQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAI 2OM7_L XXXXXXXAAAAAAAAAAXXBBBBBBBXXXXXXAAAAAAAAAAAAXXXXBB cpccccphphphhhpphhhcchchphhcphphhchphchccphchhcphh 51- 100dddddd.dddddddddd..d.........:..ddddddddd........: 101- 150.........:.........:.........:.........:.........: hhhc hppchp hhhhchhhphpp h hhhh p chph BBBB XXXXXX AAAAAAAAAXXX B BBBB X XXXX IMLE--PGTRVS---HAAVRLAAQVGT--L-LVWV------G----EAGV my_fasta_file +|+ +++++ |+ ++ + + + VVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQE 2OM7_L BBBBXXXXXXXXAAAAAAAAAAAAXXXBBBXBBBBXXXXXXXBBBBXXXX hhhcpppphchppcphhcphcchchhchhhhpchccpphchhhhhcphpc 101- 150....dd...:..ddd....:.......dd:d....dddddd.dddd...: 151- 200.........:.........:.........:.........:.........: chhh pp phpphcpcchhhphchhhccchch chhcchhch BBBB XX XXXXXAAAAAAAAAAAAXXAAAAA AAAAAAAAA -RVYA-----SG--QPGGARSDKLLYQAKLALDEDLRL---KVVRKMFEL my_fasta_file ++ + ++ + +++ | ++ +++ + ++ +| RLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEY 2OM7_L BBBBBXXXXXXXBBXXXXXAAAAAAAAAAAAAAAAAAAXXXAAAAAAAAA chphchhhhphhhpcccphpphhchhchchhphppchppchcchhhhcch 151- 200d....ddddd..dd.....:.........:........ddd........: 201- 250.........:.........:.........:.........:.........: chpchhhhccphcphcph cppchchphhh AAXXXAAAAAAAAAAAAA AAAAAAAAAAA RFGEPAPARRSVEQLRGI-----------------EGSRVRATYAL---- my_fasta_file ++ +++ +||+ + |+++ ++ ++ LDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKI 2OM7_L XXXXXAAAAAAAAAAAAAXXXXBBBBBXXXXXXXXAAAAAAAAAAAXXXX hcphcchhcchhchhhchccphhhchhcpcchpccchhhhhccpphchch 201- 250.........:........ddddddddddddddddd....:......dddd 251- 300.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file TPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 2OM7_L XXXXXBBBBXXXXXBBBBXXXXXXXXBBBBBBBBBBXXXBBBBBBBBBBX phhhhpphhcpcphphhhchhhchhhphhchhhhcppphcpchhchhhch 251- 300dddddddddddddddddddddddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARL 2OM7_L BBBXXBBBBBXXXXBBBBBBBBBBBXXXXBBBBXBBBXXXBBBBBBXXXX pphhhhhhhchhhchhhpchphhchhppphpppphhhpppcpcccchhch 301- 350dddddddddddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: hh cphphphppcchchcchc cpc phpphhphhp AA AAXXXXXXXXXXXXXXXX XXX AAAAAAAAAA --LA---KQYGVTWNGRRYDPKDWE-------KGD-----TINQCISAAT my_fasta_file +++ + ++++ ++ ++++++ + LRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVP 2OM7_L XXXXBBBXXXXXXXXXXXXXXXXXXBBBBBBBXXXAAAAAAAAAAAAAAA hchhhphccchcchchpchphhhphccphppcphhpcchhchhhcphchh 351- 400dd..ddd..:.........:.....ddddddd...ddddd.........: 401- 450.........:.........:.........:.........:.........: p hhhphpchhhhh A AAAAAAAAAAAA S---------------------CLYGVTEAAILA---------------- my_fasta_file ++ |+ + + EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMG 2OM7_L AXXXXBBBBXXXXXXBBBBBXXAAAAAAAAAAAAXXXXXXBBBXXXBBBX chhhchhhchcpchcpcchpphhhchhccchphchpphhcpppphhpphp 401- 450.ddddddddddddddddddddd.......:....dddddddddddddddd 451- 500.........:.........:.........:.........:.........: hphhhh hphhh ppchh phhhch XXXXXX BBBBB XXXXX XAAAAA ----------------AGYAPA------IGFVH-TGKPL-----SFVYDI my_fasta_file + + + + + ++ + +++ + ELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRG 2OM7_L XXXXXXXBBBBBBBBBXXXXXXBBBBBBBBBBBXXXXXXBBBBBXXXXXX chhhchhhcchccchchchphpchphhhccphpchhchcpchhcppppcp 451- 500dddddddddddddddd...:..dddddd.:...d.....ddddd.....: 501- 550.........:.........:.........:.........:.........: hchhchcphhhchhch hc cphpchccchch AAAAXAAAAAAAAAAA AA XXXXXXXAAAAA ADIIKFDTVVPKAFEI-----------AR---------RNPGEPDREVRL my_fasta_file +++ +++ |+|+ + + + | + ++| QYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPL 2OM7_L XXXXXAAAAAAAAAAAXXXXXXXXXXXXXBBBBBBBBBXXXXXXXAAAAA phphhchchchhhcppphchhphhhpphhhcchhhhhpcphcchhppphh 501- 550.........:......ddddddddddd..ddddddddd.:.........: 551- 600.........:.........:.........:.........:.........: hhcchhcppcphh chhhhhcchhhhpc AAAAAAAAAAAAA AAAAAAAAAAAXXX ACRDIFRSSKTLA-------------------KLIPLIEDVLAAGE---- my_fasta_file +++ + +|| + |++ + +++ ++ IGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 2OM7_L AAAAAAAAAAAAAXXXXXBBBBBBBBBBBBXXXXAAAAAAAAAXXXBBBB hphhhhchchphhcpphhchcppchhhchhpphhhcchhpcpchhhhchh 551- 600.........:...ddddddddddddddddddd.......:......dddd 601- 650.........:.........:.........:.........:.........: hphhh hhcc hphhh hh XXXXX XXXX XXXXX XX -IQPPA---------PPED----------AQPVA-----------IP--- my_fasta_file +++ + + + +++++ + MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGY 2OM7_L BXXXXXBBBBBBBBBXXXXBBAAAAAAAAXXXXXBBBBBBBBBBBXXAAA hchchpphcchhpchhpchphccpphhphchcpphphhchhhhhhchhph 601- 650d.....ddddddddd....dddddddddd:....ddddddddddd..ddd 651- 683.........:.........:.........:... h hhphp chp hc pp X XXXXX XXX XX XX ----L--PVSLG-----DAG---HR------SS my_fasta_file + ++ +| +++ + ++ ATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 2OM7_L AAAAXAAXXXXXBBBBBXXXAAAXXAAAAAAAA hpchcpcpppcpphhhhhchhpchhcphpcchh 651- 683dddd.dd..:..ddddd..:ddd..dddddd.. The seq2struc alignment: my_fasta_file ---> 2LIV_A align_len=348 ene=-131.00 identity=4.597701 hpc_err=45.114943 size_err=0.000000 ins=4 del=43 begin1=0 begin2=0 1- 50.........:.........:.........:.........:......iiii hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX -MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file +++ ++ + ++ +++ + +++ + + + + + EDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQI---- 2LIV_A XXBBBBBBBXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXBBB cchchhhhphhpphhhphpcpchpphcphhhchphcpphcppchph 1- 50d........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhhchppchphhhhchhhp hpphhhhhpc hphch BBBBBBXXXXXXAAAAAAAAA XXXBBBBBXX XXXBB ACIMLEPGTRVSHAAVRLAAQ-VGTLLVWVGE-------------AGVRV my_fasta_file |+ +++ + ++ | + ++ + ++ +| + AKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILM 2LIV_A BBBBXXXXAAAAAAAAAAAAAXXXXBBBBXXXAAAAAAAAAAAAAXXXBB hchcchhchcphhhhhpchhpcphchhhphhhppppphhpchhcccphhh 51- 100.........:.........:.d.......:..ddddddddddddd....: 101- 150.........:.........:.........:.........:.........: hhppphpphcpcchhhphchhhccchchchhcchhchchpchhhhccphc BBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAA YASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVE my_fasta_file +++++++++ + + ++ ++++ +|+ + ++++ +| ++ |++ +++ ITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHD 2LIV_A BBXXXXXXXXXXXXXXXBBBXXXXXXXAAAAAAAAAAAXXXXXXBBBBBX hphhhphhchphcphphhhcppphcpcpphphhchhhcchchpchhhhhc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: phcphcppchchphhhhhcphphphppcchchcchccpcphpphh phh AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAA AAA QLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCI-SAA- my_fasta_file + ++||++++ ++|++ |+ + ++++ ++ ++ +++ + KQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDF 2LIV_A XXAAAAAAAAAAAAAAAXXXXXBBBBBBXXXXXXXXAAAAAAAAAXXXXB cpphpcphhchhpcphccpphphhhhcphphpccchpphhhchcccphch 151- 200.........:.........:.........:.........:.....d...d 201- 250.........:.........:.........:.........:.........: pphhhphpchhhhhhphhhhhphhhppchhphhhchh AAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAA ----TSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIA--------- my_fasta_file + +++ + ++ +|++ ++++ + |+ +++ + || VYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLV 2LIV_A BBBBXXAAAAAAAAAAAAAXXXXXBBBBBXXXXXAAAAAAAXXXXXXXBB hhhpphhhchpphhcphchhphcpphhphcphhphphpphhpcphcphhh 201- 250dddd.....:.........:.........:.........:.ddddddddd 251- 300.........:.........:.........:.........:.........: chhchcphhhchhchhccphpchccchchhhcchhcppcp hhc AAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAA AAA -----DIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKT--LAK my_fasta_file ++++ + + ++ ++| ++ ++++ + +++++ + + ++ TKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDD 2LIV_A BBXXXXXXXXXXAAAAAAAXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXX pchcphcphhhpchhhchhchccpchpphhhhpphhhhpphphphpppcc 251- 300ddddd....:.........:.........:.........:.....dd..: 301- 348.........:.........:.........:.........:........ hhhhhcchhhhp ch phhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAXX XX XXXXXXXXXXXXXXXXXXXXXXXXXXXX LIPLIEDVLAAG---EI---QPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + +|+ + ++++ ++ + + + + +++ + PAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK 2LIV_A AAAAAAAAAAXXBBBXXBBBXXXXXXXXXXXXXBBBBBXXXXXBBBXX hhchhchhchpphcphhphhphcccpchcphchphhchhhppphpchc 301- 348.........:..ddd..ddd.........:.........:........ The seq2struc alignment: my_fasta_file ---> 1I7N_B align_len=322 ene=-104.00 identity=5.279503 hpc_err=41.925466 size_err=0.000000 ins=14 del=17 begin1=0 begin2=0 1- 50.........:.....i...:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +++ |+ ++ + + + |++++ +|+++ + ++ + ++ KAKVLLVVDEPHTDW-AKCFRGKKILGDYDIKVEQAEFSELNLVAHADGT 1I7N_B XBBBBBBBXXXXXXA AAAAXXXBBXXXBBBBBBBBXXXXBBBBBXXXXX chchhhhhcchhpch hchhcpcchhpchchchcphchpchphhhhhcpp 1- 50.........:.........:.........:.........:.........: 51- 100.....iii.:.iiiiiiiii.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ |+ + ++| + +++++| + +| + + YAVDM---QVL---------RNGTKVVRSFRPDFVLIRQHAFGMAENEDF 1I7N_B BBBBB BBB BXXBBBBBBBXXXBBBBXXXXXXXXXXXXX hhhch phh cpppchhcphchchhhhcphhhphhcpcch 51- 100.........:.........:.........:.........:.........: 101- 150......i..:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ + + + + |++ + ++++++| ++++++ +++ + + + RHLVIG-MQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLI 1I7N_B AAAAAA AAAXXXXBBXXAAAAAAXXXAAAAAAAAAAAAAAAXXXXXXXX chhhhp hphhphhphpphcphhphhcchhhhhphhhhhcphppcchhhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hh hcphphphppcch chcchccp cphpphhphhpphhhphp AA AAAXXXXXXXXXX XXXXXXXX XAAAAAAAAAAAAAAAAA LL---AKQYGVTWNGRRY-----DPKDWEKG-DTINQCISAATSCLYGVT my_fasta_file ++ ++ ++++ + +++ +| + + + + + + EQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVAL 1I7N_B XXBBBXXXXXXXXXXXXXBBBBBXXXXXXXXBBBBXXAAAAAAAAAAAAA cpphhhphcchhphhphhhhhchphhhpphpchchcphhchpchhphhhh 151- 200..ddd....:........ddddd......:.d.......:.........: 201- 250.........:.........:.........:.........:.........: chhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphp AAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXX EAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPG my_fasta_file ++ +| + + + + ++| +++ + + ++ +|++ ++ TQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQI 1I7N_B AXXXBBBBBXXXBBBBBBBBBBXXBBBBBBBBXXXXXXXXXXXXXXXBBB ppphhphchhhchchchchpchppphchhhcpphppphcppppphhhcph 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: chccchchhhcchhcppcphh chhhhhcchhhhpchphhhhh XXXAAAAAAAAAAAAAAAAAA AAAAAAAAAAAXXXXXXXXXX EPDREVRLACRDIFRSSKTLA--------KLIPLIEDVLAAGEIQPPAPP my_fasta_file + | + + ++ |+ +++++++ + +++| ++ AMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGE 1I7N_B XXXAAAAAAAAAAXXXXXXXXBBBBBBBBBXXXXBBBBBBBXXXXXXXXX hhpcchchhhchhpchhpphchhhhchhhpccpcchhhchhchphhhhpc 251- 300.........:.........:.dddddddd:.........:.........: 301- 322.........:.........:.. cchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXX EDAQPVAIPLPVSLGDAGHRSS my_fasta_file + +++ ++ + +++| HQVEDRQLITDLVISKMNQLLS 1I7N_B XAAAAAAAAAAAAAAAAAAAXX hphcccphhpchhhpchpphhp 301- 322.........:.........:.. The seq2struc alignment: my_fasta_file ---> 2Q3Z_A align_len=683 ene=120.00 identity=3.513909 hpc_err=24.011713 size_err=0.000000 ins=0 del=378 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhh phhhh X BB XXX XXXXX ------------------------------M-TW-LPL-------NPIPL my_fasta_file ++ ++ +++ MAEELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNY 2Q3Z_A XXXXXXBBBBBXXAAAAAAAAXXXXXXXXXXBBBXXXXBBBBBBBXXXXX hhcchhhcchchchcpppcchhphchhccchhhccpphhhhphhhcpcph 1- 50dddddddddddddddddddddddddddddd.d..d...ddddddd....: 51- 100.........:.........:.........:.........:.........: ccch phhhh php phch hcp hhhhhccpp h XXXX BBBBB XXX BBBB XXX BBBBBBXXX X KDRV----SMIFL-------QYG-QIDV-------IDG-AFVLIDKTG-I my_fasta_file + | ++ + ++ +++ +|+ |+| + + QASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTL 2Q3Z_A XXXXBBBBBBBBBXXXXXXXXXXBBBBBXXXXXXXXXXBBBBBBBXXXBB phphcphphphhpphhhppchppchchhhcchhccpchphphhcppchph 51- 100....dddd.:...ddddddd...d....ddddddd...d:........d: 101- 150.........:.........:.........:.........:.........: cphhh hp ph hhhhhc hppch BBBBB XX XX BBBBBB XXXXX RTHIP-----VG-----------SV-------ACIMLE-------PGTRV my_fasta_file ++ + + + |+ ++++ SLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYL 2Q3Z_A BBBBBXXXXXXXBBBBBBBBBBBXXBBBBBBBBBBBBBXXXXXXXXXXXX phphpphhphhhphhchphchppphpppphhhphhhhhhphhhhhchhhh 101- 150.....ddddd..ddddddddddd..ddddddd......ddddddd....: 151- 200.........:.........:.........:.........:.........: phhhhchhhphpp hhhhhpchp hchhhppphpph cpcchhh XAAAAAAAAAXXX BBBBBXXXX XBBBBXXXXXXX AAAAAAA SHAAVRLAAQVGT--LLVWVGEAG--VRVYASGQPGGA---RSDKLLY-- my_fasta_file ++++|++ + ++ +++ ++ ++|| + ++++||+ DSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVN 2Q3Z_A XXAAAAAAAXXXXBBBBBBBXXXXBBBBBBBXXXXXXXAAAAAAAAAAXX cpccccpchhhpppphhhppphchhcphhhphpphpcphhchhhhhhchp 151- 200.........:...dd....:....dd...:........ddd.......dd 201- 250.........:.........:.........:.........:.........: phchhhccchchc hhcchhchch AAAAAXXAAAAAA AAAAAAAAAA QAKLALDEDLRLK---VVRKMFELRF------------------------ my_fasta_file +++|+++ +++ |++++++ + PKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVS 2Q3Z_A AAAAAXAAAAAAAXXXAAAAAAAAAAXXXXXXXXXXBBBXXXXXXXXXXX hchhcphpcchpccpphhhhpchppphhphpccpphhhpchcpphpcphp 201- 250.........:...ddd...:......dddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: pch hhhccp hcphcphcppchchp XXX AAAAAA AAAAAAAAAAAAAAA ----GEP---APARRS----------VEQLRGIEGSRVRAT--------- my_fasta_file + + +++ ++ ++ ++ + | + PMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTN 2Q3Z_A XXXXXXXAAAAAAAAAXXXXXBBBBXAAAAAAAAAAAAAAAXXXBBBBBB hhphhpphchhcchcphphpchchpphhhhhhhhhphhchhphhpchhpp 251- 300dddd...ddd......dddddddddd...:.........:.ddddddddd 301- 350.........:.........:.........:.........:.........: hhhhhcp hph phpp AAAAAAA XXX XXXX --------YALLAKQ-----------------------YGV-----TWNG my_fasta_file ++|| + + +++| YNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPG 2Q3Z_A BBBBXXXXAAAAAAAXXXXXXXBBBBBBBBBXXXXXXXXXXBBBBBXXXX hpphhcpppphhhchhcpchpchppccpchhhphhhhhcphhpchchphp 301- 350dddddddd.:.....ddddddddddddddddddddddd.:.ddddd...: 351- 400.........:.........:.........:.........:.........: cchchcchccpc phpph hphhpphhhphpchhhhh hph hh XXXXXXXXXXXX AAAAA AAAAAAAAAAAAAAAAAA XXX XX RRYDPKDWEKGD--TINQC-ISAATSCLYGVTEAAILA-----AGY--AP my_fasta_file + +++++++ + + +++ + +++ ++ |+ YEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNAD 2Q3Z_A XXXXXXXXXXXXBBAAAAAXXXXXXXXXAAAAAAAAXXBBBBBXXXBBXX hcphphhchphpccpcpphhhphhhhchhccpchppchchhhhhhchphc 351- 400.........:..dd.....d.........:........ddddd...dd.: 401- 450.........:.........:.........:.........:.........: h hphhh ppchh phhhchhchhchcphhhchhch X BBBBB XXXXX XAAAAAAAAAXAAAAAAAAAAA A-----IGFVH-TGKPL---SFVYDIADIIKFDTVVPKAFEI-------- my_fasta_file + +++ + + + + |+ ++++ +++ +++ VVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSS 2Q3Z_A XBBBBBBBBBBXXXXXXBBBXAAAAXXXXXXAAAAAAAAAAAXXBBBBBB hhchhppccpphhcphpcphhhphchppcphpcccccchphphchhcppp 401- 450.ddddd...:.d.....ddd.........:.........:..dddddddd 451- 500.........:.........:.........:.........:.........: hccph AAXXX ------------------------------------ARRNP--------- my_fasta_file + + EEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTA 2Q3Z_A XXXXXXXXXXBBBBBBBBBXXXXXBBBBBBBBBBBBXXXXXBBBBBBBBB cccchhpchphhpchhccccpphhhchchppphphppchchhhhhpppph 451- 500dddddddddddddddddddddddddddddddddddd...:.ddddddddd 501- 550.........:.........:.........:.........:.........: pch ccchc XXX XAAAA ------GEP---------DREVR--------------------------- my_fasta_file ++ ++ EEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEK 2Q3Z_A BBBBBBXXXBBBBBBBBBXAAAAXXXXXXXXBBBBBBBBBBXXXXBBBBB cchhhchhhhhcphphpphhphchppchhhphphchhpccphhhhhhhcc 501- 550dddddd...ddddddddd.:...ddddddddddddddddddddddddddd 551- 600.........:.........:.........:.........:.........: hhh cchhcppcp hhc AAA AAAAAAAAA AAA ---------------------LAC--------RDIFRSSKT------LAK my_fasta_file ++ +++++ +|+ ++| YRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQK 2Q3Z_A BBBBBXXXXXXBBBBBXXXXXXXXBBBBBBBBXXXXXXXXXBBBBBBXXX hcchhpcpphhchchhhhchhhpphhhhccchhhcphchchchhpchcpc 551- 600ddddddddddddddddddddd...dddddddd.......:.dddddd..: 601- 650.........:.........:.........:.........:.........: hhhhh cchhhhpc hphhhhh cchphh AAAAA AAAAAXXX XXXXXXX XXXXXX LIPLI-----EDVLAAGE--------IQPPAPP--------EDAQPV--- my_fasta_file ++ + |+| ++++ + | ++ RKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKV 2Q3Z_A XXXXXBBBBBXXXXXXXXBBBBBBBBXXXXXXXBBBBBBBBXXXXXXBBB cchhhchphpphhhhhhcphphphcphphpccpcphchhchhchpcchch 601- 650.....ddddd........dddddddd...:...dddddddd......ddd 651- 683.........:.........:.........:... h hhhhhp hpchphcpp X XXXXXX XXXXXXXXX ----A-IPLPVS------LGDAGHRSS------ my_fasta_file + + + |+++++ RMDLVPLHMGLHKLVVNFESDKLKAVKGFRNVI 2Q3Z_A BBBBXBXXXXXXBBBBBBXXXXXXXXXBBBBBB chchhhhhhphhchhhphcpcchchhcphcphh 651- 683dddd.d...:..dddddd.:.......dddddd The seq2struc alignment: my_fasta_file ---> 2QF7_A align_len=1152 ene=542.00 identity=1.736111 hpc_err=12.586805 size_err=0.000000 ins=0 del=847 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h p X B -----------------------------------------------M-T my_fasta_file + + GPISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESY 2QF7_A XXXXBBBBXXXAAAAAAAAAAAAAXXXBBBBBBXXXXXXXAAAAXXXXBB phhpchhhhpcpchhhchhchhpchphcphhhhhcccchhhhchchccph 1- 50ddddddddddddddddddddddddddddddddddddddddddddddd.d: 51- 100.........:.........:.........:.........:.........: h hhhphhhh c cchphh B XXXXXXXX X XXXBBB W------LPLNPIPL----K-----------DRVSMI------------- my_fasta_file + | + +| +++ QVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFV 2QF7_A BXXXXXXXXXXXXXXAAAAXAAAAAAAAAAAXXXBBBXXXXXXXXXAAAA phpcphhhhcchphhcphhphcchhchhchpphchhhhphphhpcphchh 51- 100.dddddd..:.....dddd:ddddddddddd......ddddddddddddd 101- 150.........:.........:.........:.........:.........: hh php BB XXX --------FL-------------------------------QYG------ my_fasta_file ++ DACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMA 2QF7_A AAAAAXXXBBXXXXAAAAAAAAXAAAAAAAAAAXXXXXXXXXXXBBBBBB chhpchphhhhphchcphcphppchhhcphhhphphhhhhhpchhhcchh 101- 150dddddddd.:ddddddddddddddddddddddddddddddd...dddddd 151- 200.........:.........:.........:.........:.........: phch h cp hhhhhc BBBB X XX BBBBBB QIDV----I-------------DG-AFVLID------------------- my_fasta_file ++ | +| + EVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAF 2QF7_A BBBBXXXXXBBBBBBBBBBBBBXXBBBBBBBXXXXXXAAAAAAAAAAAAA chhchhhhhphhhhhchphppppcphchhcpchchhcchpchccchhhhh 151- 200....dddd.ddddddddddddd..d....:.ddddddddddddddddddd 201- 250.........:.........:.........:.........:.........: cpph cphhhhpph hhhhhc hpp chphhh XXXX BBBBBXXXX BBBBBB XXX XXXAAA ----KTGI-----RTHIPVGSV--ACIMLE---PGT--------RVSHAA my_fasta_file ++++ + | ++ + + ++ + + |+++| GKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERA 2QF7_A AAAAXXXXBBBBBBBBBBXXXXBBBBBBBBXXXXXXAAAAAAAAXXXAAA pccchhhcchhcchchhcpphhpcphpphhhhhccchphpccppchhcch 201- 250dddd....ddddd......:..dd.....:ddd...dddddddd.....: 251- 300.........:.........:.........:.........:.........: hchhhp h pphh AAAAAA X XXBB VRLAAQ-------------------------------------V--GTLL my_fasta_file + ++ PAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 2QF7_A AAAAAAXXXXXXXXXXXXXXXXXXXXXXBBBBBBBBXBBXXXXXBBXXBB hhhhhpchpcpchhhhphchhphpphhphpphchhhchcppchhhhchph 251- 300......ddddddddddddddddddddddddddddddddddddd.dd...: 301- 350.........:.........:.........:.........:.........: hhh pchph ch hh ppphp ph BBB XXXXX BB BB XXXXX XX --VWV-GEAGV--RV--------YA-SGQPG---------GA-------- my_fasta_file + + ++ | ++ | + RIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHAL 2QF7_A XXBBBXXXXXXBBBBXXXXXXXXBBXXXXXXBBBBBBBBBXXAAAAAAAA chphchphpchhpphchhchphhhhcphhhpphppphhppcchchpphhh 301- 350dd...d...:.dd..dddddddd..d...:.ddddddddd..dddddddd 351- 400.........:.........:.........:.........:.........: cpcc hhhphchhhc c AAAA AAAAAAAAXX A --RSDK---------LLYQAKLALD---E--------------------- my_fasta_file |+ + + + + QCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDP 2QF7_A AAAAAAXBBBXXXXXAAAAAAAAXXAAAAXXXXXXXXXXXXXXXXXXXXX phchppcchchphhhchpchphhcphpphphchcpppphpphhhpchhch 351- 400dd....ddddddddd....:.....ddd.ddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: chchchhcchhchch pc AAAAAAAAAAAAAAA XX --DLRLKVVRKMFELRF----------------------------GE--- my_fasta_file +++++ + | ++ + LLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDN 2QF7_A XXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAA hhhchphhhhphhchhpchcchhcchchcphhpphphhchhhphhchccp 401- 450dd.......:.......dddddddddddddddddddddddddddd..ddd 451- 500.........:.........:.........:.........:.........: h hhhccph cphcphc ppchchphhh X AAAAAAA AAAAAAA AAAAAAAAAA -----P---APARRSV------------EQLRGIE-----GSRVRATYAL my_fasta_file +|+++ + ++ +++ + ++++ ++ SYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLEN 2QF7_A AAAAAXAAAAAAAAAAXXXXBBBBXXXXAAAAAAAXXXXXAAAAAAAAAA phppchhcpphchhpphccpcchpchhphhhchphpphhchccchchhcp 451- 500ddddd.ddd:......dddddddddddd.:.....ddddd.........: 501- 550.........:.........:.........:.........:.........: hhcp h php hppc AAAA X XXX XXXX LAKQ------------Y---------GVT-----------WNGR------ my_fasta_file | + + ++ + AARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDG 2QF7_A AAAAXXXXXBBBBBBXXAAAAAAAAAXXXAAAAAAAAAAAXXXXBBBBBB hhchhhhhhpppphccppcphhcphphcchpchhcpccchhhpcpphccp 501- 550....dddddddddddd.ddddddddd...ddddddddddd....dddddd 551- 600.........:.........:.........:.........:.........: chchcchccpc p hpphhph XXXXXXXXXXX A AAAAAAA -RYDPKDWEKGD-------------T-----------------INQCISA my_fasta_file ++ + ++ + + +++++ HQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDP 2QF7_A BXXXXXXXXXXXAAAAAAAAAAAAAAXXXBBBBBXXXXXXXXXAAAAAAA hpphhhpchcphchhchhpphphhhhphhphchhpphphchphchhpcch 551- 600d........:..ddddddddddddd.ddddddddddddddddd......: 601- 650.........:.........:.........:.........:.........: hp phhhphpchhhhh AA AAAAAAAAAAAAA AT------------------------SCLYGVTEAAILA----------- my_fasta_file +++ + WERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDL 2QF7_A AAXXXBBBBBBBXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXBBBBBBX hcchhhhccphhphhhphhhcphpphphpphhcphhchhhcphhcpphch 601- 650..dddddddddddddddddddddddd...:.........ddddddddddd 651- 700.........:.........:.........:.........:.........: hp hhhh h ph XX XXXX B BB ---AG--------------YAPA----I--------------------GF my_fasta_file |++ + + FRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYY 2QF7_A XXXXXAAAAAAAAAAAAAAXXXXBBBBBXXXXXXAAAAAAAAAAXXXXBB hchhchhphhcphchphchhhccpchhchhhhhppchhpphchchchchh 651- 700ddd..dddddddddddddd:...dddd.dddddddddddddddddddd.: 701- 750.........:.........:.........:.........:.........: hh BB VH------------------------------------------------ my_fasta_file ++ TNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHD 2QF7_A BBXXXXXXXXXXXXXAAAAAAAAXXXXXXXXXXAAAAAAAAAAAAAAAXX pphhhchcchphhhhhhcchhphhchhhhchhhchhcchpphhhhhhphc 701- 750..dddddddddddddddddddddddddddddddddddddddddddddddd 751- 800.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file TSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDP 2QF7_A XXXXXXXXXXXXXXAAAAXXXAAAAAAAAAAAAAXXXXXXAAAAAAAAAA ppphhhhphhhhhchphchhchhhchhpppppphhhpphhchhpppccch 751- 800dddddddddddddddddddddddddddddddddddddddddddddddddd 801- 850.........:.........:.........:.........:.........: ppchhp hhhc hhchh c hc XXXXXX AAAA AAAAA X AA -------TGKPLS-----------FVYD---IADII--------K---FD my_fasta_file ++ + ++++ + + + GLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKE 2QF7_A AAAAXXXXXXXXXAAAAAAAAAAAAAAAXXXAAAAAXXXXXXXXXAAAAA phchhhhcchphhhchhcpphhhhcpchcphhpchhhhchhppphpphcc 801- 850ddddddd..:...ddddddddddd....ddd.....dddddddd.ddd.: 851- 900.........:.........:.........:.........:.........: phh hchhchhc cp AAA AAAAAAAA XX TVV-----------PKAFEIAR----------------RN---------- my_fasta_file + | ++| QARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDL 2QF7_A AAAXXXXXXXXXXXAAAAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAA phcphphcpchhphhphhhchpphhpchhchphppchhpchhhhhhppch 851- 900...ddddddddddd.....:..dddddddddddddddd.:dddddddddd 901- 950.........:.........:.........:.........:.........: hpchccchchhhcc hhcppcphhchhhh hcchhh XXXXXAAAAAAAAA AAAAAAAAAAAAAA AAAAAA --PGEPDREVRLACRD-IFRSSKTLAKLIPL-------IEDVLA------ my_fasta_file + + + + + ++| + + |+ + + ++ TVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV 2QF7_A AAXXXXXAAAAAAAAAXAAAAAAAAAAAAAAXXXXXXXAAAAAAXXXXXX phhchhphccchphhcphhphhcpchpphhpphhchhpcchhcpcchhph 901- 950dd.......:......d..:.........:.ddddddd.:....dddddd 951-1000.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDT 2QF7_A BBBBBBBXXBBBBBBBBBBXXXXXXXBBBBBBBBXXBBBBBBBBXXXXXX chpphhcchchchccchhccchccchpchchhphhhhhchhpchhhhpcp 951-1000dddddddddddddddddddddddddddddddddddddddddddddddddd 1001-1050.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file YGPVSVLPTPAYFYGLADGEELFADIEKGKTLVIVNQAVSATDSQGMVTV 2QF7_A XXXXXXXXXXXXXXXBBBXXXXBBBBBBXXXXXXXXXBBBBBBXXBBBBX hphhphhhphhhhhphhcpcchhhchccpcphhhhpphhphpcppphhph 1001-1050dddddddddddddddddddddddddddddddddddddddddddddddddd 1051-1100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file FFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFV 2QF7_A XXXXXXXBBXXXXXXBBXXXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXX hhchppphcchchhcchhphpphhhccchchpphhhhphhhhphhpchhh 1051-1100dddddddddddddddddddddddddddddddddddddddddddddddddd 1101-1150.........:.........:.........:.........:.........: hpchphhhhhcchphhhhhhhhphpchphc XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX --------------------AGEIQPPAPPEDAQPVAIPLPVSLGDAGHR my_fasta_file + +|+ ++++ +| + ++++++ ++ + SSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLA 2QF7_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX pppphhphpchhhphchhchcphhhhcccpphhchhhchpcphchcchhh 1101-1150dddddddddddddddddddd.........:.........:.........: 1151-1152.. pp XX SS my_fasta_file ++ VY 2QF7_A XX hh 1151-1152.. The seq2struc alignment: my_fasta_file ---> 2CGE_D align_len=405 ene=-124.00 identity=4.444445 hpc_err=36.543211 size_err=0.000000 ins=0 del=100 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccch phhhhphpphchhcphhhhhc cpph cphh XBBXXXXXXXXXXXX BBBBBXXXBBBBXXXBBBBBB XXXX BBBB MTWLPLNPIPLKDRV---SMIFLQYGQIDVIDGAFVLID-KTGI--RTHI my_fasta_file + | + + +++ + + ++++ + ++ + ++ ++ ++ TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILF 2CGE_D XXXXXXXXXXXXXXXAAAAAAAAAAXXXXXXXBBBBBBBXXXXXBBBBBB pchhhpcphpchppcchphhhcphppchcchhhhchhphcpphchchhhh 1- 50.........:.....ddd.:.........:.........d....dd...: 51- 100.........:.........:.........:.........:.........: hhpphhhhhhchppchphh hh chhhphpphhhhhpchphchhhpp BXXXXBBBBBBXXXXXXAA AA AAAAAXXXBBBBBXXXXXBBBBXX PVGSVACIMLEPGTRVSHA----AV-RLAAQVGTLLVWVGEAGVRVYASG my_fasta_file + |+ + + ++ + ++ | + + ++ | +| IPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSE 2CGE_D BXXXXXXXXXXXXXXXXXXBBBBXXBBBBXXXXXXXXXXXXXXBBBBBBX hhcchhhchhcpccccpphchhhcchhhpcchcchhhchhphhcphhcpc 51- 100.........:.........dddd..d...:.........:.........: 101- 150.........:.........:.........:.........:.........: phpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcp XXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAA QPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRG my_fasta_file ++++| |+|+| +++ + ++++++ ++ +|+++++ + + DLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFS 2CGE_D XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAA chhhphpcchhpppchhchhccphhcchhchhpchhccpcphcchhphhp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hcppchchp hhhhhcphp hphppcc hchcchc AAAAAAAAA AAAAAAAXX XXXXXXX XXXXXXX IEGSRVRAT---YALLAKQYG----VTWNGRR---------YDPKDWE-- my_fasta_file + + +++ ++ + + + ++ + +++ + KNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIY 2CGE_D AAAAAAAAAXXXXAAAAAXXXBBBBXXXXXXXBBAAAAAAAXXXXXXXBB cphchphhccpppchhhhchhchpppcphcchpphpchhpchhchpcphh 151- 200.........ddd.......:.dddd....:..ddddddddd.......dd 201- 250.........:.........:.........:.........:.........: cpcphpph hphhpp hhhphpchhhhhhphhhhhph XXXAAAAA AAAAAA AAAAAAAAAAAAXXXXXXBBB ---KGDTINQC----ISAATS--------CLYGVTEAAILAAGYAPAIGF my_fasta_file +++++ | + ++ ++ +| ++ + +++++ YITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 2CGE_D BBBXXXAAAAAXXXXAAAAAAXXXXBBBBXXAAAAAAAAAAXXXXXXBBB hhppcphchhccphhhchhchcphchhhhpchhcchhhpphcchcpcphh 201- 250ddd......:.dddd....:.dddddddd:.........:.........: 251- 300.........:.........:.........:.........:.........: hhppchhp hhhchhchhchcphhhchhchhc BBXXXXXX AAAAAAAAAXAAAAAAAAAAAAA ---VHTGKPLS--FVYDIADIIKFDTVVPKAFEIAR-------------- my_fasta_file +++ +++ ++ ++ +||++ +|| + + DITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLL 2CGE_D XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXBBBBXXXXX chpcchchccpcccchccccchcchchhpchhcchhpcphcchhhphchh 251- 300ddd......:.dd......:.........:......dddddddddddddd 301- 350.........:.........:.........:.........:.........: c phpchc cchchhhcch hcp X XXXXXX AAAAAAAAAA AAA --R-----NPGEPD-REVRLACRDI----------------------FRS my_fasta_file + ++ ++| ++ ++ DAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPII 2CGE_D XXXBBBBBXXXXXXAAAAAAAAAAAXXXXXXXXXXXXXBBBBBXXXXAAA chhhhhcppphphphphcchhchphhccpphpphhppccphchphcphhh 301- 350dd.ddddd.:....d....:.....dddddddddddddddddddddd..: 351- 400.........:.........:.........:.........:.........: pcphhch hhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAA AAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX SKTLAKL-------IPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +++ ++ + +++ +|++ ++++ + ++ ++++ + KELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLI 2CGE_D AAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAA cchccchccpphpccphcchpchhhcphhhppphphcchpphhpchpchh 351- 400.......ddddddd.....:.........:.........:.........: 401- 405..... phcpp XXXXX GHRSS my_fasta_file + SLGLN 2CGE_D AAXXX phphp 401- 405..... The seq2struc alignment: my_fasta_file ---> 1A06_A align_len=320 ene=-143.00 identity=6.562500 hpc_err=48.437500 size_err=0.000000 ins=13 del=15 begin1=0 begin2=0 1- 50...iiii..:.........:...ii....:.........:ii...iiii: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ |+ ++ ++ +|| + + | WKQ----AEDIRDIYDFRDVLGT--GAFSEVILAEDKRTQ--KLV----A 1A06_A XBB XXXXXXXBBBBBBXXX XXXXXBBBBBBXXXX XBB B hcp hcchcchhchcchhpp phhpchhhhccccpp chh h 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:....i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + ++ +++ +++++++++ ++ + + + + +++ + +|+ +++ + IKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHL-YLIMQ 1A06_A BBBBBXXAAAAAAAXXXXXXXXXBBBBBBXXXBBBBBBXXXXXX XAAAA hchhhcchhcpccpphcpchhhhhchchhphhhhcchhcppphh hhhhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ ++|+ ++|+ + ++ +++ + +++++ +++++|++++++ LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPEN 1A06_A AAXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBXXXXXXX hhpppchhcchhccphhpccchpchhhphhchhchhhchphhhcchchcp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhp hp AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAA AA LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYG---------VT my_fasta_file || + + + ++++| ++ + |++ + + | +|+ LLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYS 1A06_A XBBBXXXXXXXXAAAAXXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXXAA hhhhphcccpchhhpchphpchcchpphhpphhpphphhhhchhhpchhp 151- 200.........:.........:.........:.........ddddddddd.: 201- 250.........:.........:.........:.........:.........: chhhhhhphhhhhphhhppchhphhhchhchh chcphhhchhch AAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAA XAAAAAAAAAAA EAAILAAGYAPAIGFVHTGKPLSFVYDIADII------KFDTVVPKAFEI my_fasta_file | + +++ | + ++| ++++| ++ + +++ + +++++ KAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDIS 1A06_A AAAAAAAXXXXXXXXXXXXXXXAAAAAAAAAAXXXXXXXXXXAAAAAAXX chhchhphphhhhhhhhphhhhhccpchchhcphhchchchcphhhcchp 201- 250.........:.........:.........:..dddddd.:.........: 251- 300.........:.........:.........:.........:.........: hccphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcc AAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXX ARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPED my_fasta_file + + ++++++++ + + ++ +++ + | ++ + ++++++ +++ DSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKK 1A06_A XXXXXXXXXXXXAAAAAAAAAAAXXXXXXXXXXXAAAAAAAXAAAAAAAA cphcchhchhhccchccchphcphhphhhhhpcphhccphhpphpcphcc 251- 300.........:.........:.........:.........:.........: 301- 320.........:.........: hphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXX AQPVAIPLPVSLGDAGHRSS my_fasta_file ++ +++ ++ +++ |+ |++ NFAKSKWKQAFNATAVVRHM 1A06_A AXAAAAAAAAAAAAAAAAAA phhcpchcphhphphhhchh 301- 320.........:.........: The seq2struc alignment: my_fasta_file ---> 2O1T_J align_len=426 ene=-135.00 identity=3.990610 hpc_err=35.915494 size_err=0.000000 ins=0 del=121 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhc cchphhhhphpphchhcphhhhhc cpph cphhh XBBXXXXXXXXX XXXBBBBBXXXBBBBXXXBBBBBB XXXX BBBBB MTWLPLNPIPLK--DRVSMIFLQYGQIDVIDGAFVLID-KTGI--RTHIP my_fasta_file ++ ++++++ +++ ++++ +|+ ++ ++ ++ + KPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFV 2O1T_J XXXXXXXXXXXXAAAAAAAAAAXXXXXXXXXBBBBBBBXXXXXBBBBBBB chhhpchpcchcccchchhhcphpccpcchhhhhhhphcpchphcphhhh 1- 50.........:..dd.....:.........:........d:...dd....: 51- 100.........:.........:.........:.........:.........: hpphhhhhhchp pchphhhhchhhphpphhhhhpchphchh XXXXBBBBBBXX XXXXAAAAAAAAAXXXBBBBBXXXXXBBB -VGSVACIMLEPG---TRVSHAAVRLAAQVGTLLVWVGEAGVRVY----- my_fasta_file + + ++ +| | ++ ||+ ++ + + +++|+ PTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDS 2O1T_J XXXXXXBBBBBXXBBBBXXXXXXXXXXXXXXBBBBBBXXXXXXXXAAAAA hpphhcphhcchppccpchhchhhcchhhpcchhchhhchhphhcphhcp 51- 100d........:...ddd...:.........:.........:.....ddddd 101- 150.........:.........:.........:.........:.........: hp pphpphcpcchhhphchh hc c chchchhcchhchch pch BX XXXXXXAAAAAAAAAAAA XX A AAAAAAAAAAAAAAA XXX AS-GQPGGARSDKLLYQAKLA--LD----E-DLRLKVVRKMFELRF-GEP my_fasta_file + ++++ + + + ++ | ++ + + ++ + | + ++ ++ DDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWKEFG 2O1T_J XXAAAAAAAAAAAAAAAAAAAXXXXAAAAAXAAAAAAAAAAAAAAAXXXX cchhhphpccphpphchhchhccchhccphchhcchhccchpcphhcchp 101- 150..d......:.........:.dd..dddd:d........:......d..: 151- 200.........:.........:.........:.........:.........: hhhccph cphcphc ppchch AAAAAAA AAAAAAA AAAAAA APARRSV--------------EQLRGIE---------------GSRVRA- my_fasta_file ++ + | ++ + + TNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIY 2O1T_J AAAAAAAXBBBBXXBBBBBBBAAAAAAAXXXXXXBBBBBBXXXAAAAAAX pphchphhcchppcpchhchhchppphhhpchpphcphhcchcccpcchh 151- 200.......dddddddddddddd.......ddddddddddddddd......d 201- 250.........:.........:.........:.........:.........: phhhhh c phph php pc chchcchccpcp AAAAAA A AXXX XXX XX XXXXXXXXXXXA ---TYALLA---K---QYGV------TWN--GR-----RYDPKDWEKGDT my_fasta_file +++++ ++ + + ++ +| ++ | + FMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQ 2O1T_J XXXAAAAAAXXXXBBBXXXXAAAAAAXXXBBXXBBBBBXXXXXXXXXXXA hhhpppccchcpphhhcchhccphchhhhpchhcchhhphhhchcpcchp 201- 250ddd......ddd.ddd...:dddddd...dd..ddddd.:.........: 251- 300.........:.........:.........:.........:.........: hpphhphhpphhhphpchhhhhhphhhh h phhh ppc AAAAAAAAAAAAAAAAAAAAAAXXXXXX B BBBB XXX INQCISAATSCLYGVTEAAILAAGYAPA-----I--------GFVH-TGK my_fasta_file +++++ ++ +++ + |+++ + + + + + NVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQR 2O1T_J AAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBBXXXXXXXXBBBBXXXX phhccphchccpccpccpcchhccchchhhphhccchhccchcchhhppc 251- 300.........:.........:........ddddd.dddddddd....d..: 301- 350.........:.........:.........:.........:.........: hhphhhchhchhchcp hhhchhchhcc XXXAAAAAAAAAXAAA AAAAAAAAAAX PLSFVYDIADIIKFDT-----------------------VVPKAFEIARR my_fasta_file + + + ++++++ ++|++++ + LTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINP 2O1T_J XXXAAAAAAAAAAAAAXXXXXXXXXXXXXXBBBBBXXXXAAAAAAAAAAA hpcphhhhhhpphphppphcchhchphhpppcchppphhhppccphchph 301- 350.........:......ddddddddddddddddddddddd:.........: 351- 400.........:.........:.........:.........:.........: phpchccchchhhcchhcppcp hhchhhhhcchh hhpchph XXXXXXAAAAAAAAAAAAAAAA AAAAAAAAAAAA AXXXXXX NPGEPDREVRLACRDIFRSSKT-------LAKLIPLIEDVL--AAGEIQP my_fasta_file ++ + |+ + |++ + ++++ +++++ +|+ + RHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRI 2O1T_J AXXXXAAAAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAXXXXXXXXX chhhhcchhcchcccccccphpchhhhhhcphphcpphhhhcpchhpcch 351- 400.........:.........:..ddddddd:.........:.dd......: 401- 426.........:.........:...... hhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXX PAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ ++++ + + +| + ++ ++ ERMLRLSLNIDPDAKVEEEPEEEPEE 2O1T_J XXXXXXXXXXXXXXXXXXXXXXXXXX cchhchphphchchchccchccchcc 401- 426.........:.........:...... The seq2struc alignment: my_fasta_file ---> 2J7T_A align_len=318 ene=-145.00 identity=8.805031 hpc_err=41.509435 size_err=0.000000 ins=25 del=13 begin1=0 begin2=0 1- 50.ii......:.........:...iii...:.........:.....iiii: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ +|+ ++++ ++| +| + + | +++ + H--VRRDLDPNEVWEIVGELGDG---AFGKVYKAKNKETGALAAA----K 2J7T_A X XXXXXXXXXXBBBBBBBBXX XXXXBBBBBBXXXXXBBBB B h hccchchpchhchhpchpcp hhpchhchcpccpphhhhh c 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchh hphpp hhhhhpchphchhhppphpphcp BBBBBXXXXXXAAAAAAA AAXXX BBBBBXXXXXBBBBXXXXXXXAA CIMLEPGTRVSHAAVRLA---AQVGT-LLVWVGEAGVRVYASGQPGGARS my_fasta_file |++ + + | + +++++ + |+ + ++ +++ + + VIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 2J7T_A BBXXXAAAAAAAAAAAAAXXXXXXXXBBBBBBXXBXBBBBBBXXXXBBAA hhcpcpccchcchhhchchhhphchhhhhchhphhhhcpchhhhhchhhp 51- 100.........:........ddd.....d..:.........:.........: 101- 150.........:.........:.........:.........:.........: cchhhp hchhhccchchchhcchhchchpchhhhccphcp hcph AAAAAA AAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAA AAAA DKLLYQ---AKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQ---LRGI my_fasta_file + + + ++| |+++++| | | | ++++ +++++++ + +++ GAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLM 2J7T_A AAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBXXXX phhchhhhchccphpchphphhhcphhchhphhhpcchhhcchchpphhh 101- 150......ddd:.........:.........:.........:...ddd...: 151- 200.........:.........:.........:.......i.:.........: c ppchchphhhhhcphphphppcchchcchccpcphpphhphhpphh A AAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA E---GSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL my_fasta_file +| ++++ + + ++ + + +++|+++ ++|+ + TLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPE-VVMCETMKDTPY 2J7T_A XBBBXXXAAAAAAAAAAAXXXXXXXXXAAAAAAAAXX XXXXXXAAAAAA phcpchchhchphphcphcphpcccphhpphhhhhhc hhhhcphccphh 151- 200.ddd.....:.........:.........:.........:.........: 201- 250.........:iii...iiiii......iiiiii...i..:.........: hphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR my_fasta_file ++++ +|+ + + + ++ + +|++ + ++ DYKADIWSLG---ITL-----IEMAQI------EPP-HHELNPMRVLLKI 2J7T_A AAAAAAAAAA XXX XXXXXX AAA AAAAAAAXXXXXX chchchhphp hph hchhph chh hhchphhchhhch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: cphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchp XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQ my_fasta_file + + +| ++++++ ++|| ++ |++++ + +|| + | + ++ AKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITS 2J7T_A XXXXXXXAAAAAAAAAAXXXXXXXXXXAAAAXXXXXXXXXXXXAAAAAAA hcpchhphhphpchphchcchhchhhccphcpchphhphhchhhhpphpp 251- 300.........:.........:.........:.........:.........: 301- 318.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file ++| ++ |+++ | + NKALRELVAEAKAEVMEE 2J7T_A AAAAAAAXXXAAAAAAXX pchhcchhhchchchhcc 301- 318.........:........ The seq2struc alignment: my_fasta_file ---> 2GTP_B align_len=329 ene=-88.00 identity=5.471125 hpc_err=41.945288 size_err=0.000000 ins=12 del=24 begin1=0 begin2=0 1- 50.........:.....iiiii...iiii..:ii.......:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + |+ + + + ++ +|++ +++ +++ + REVKLLLLGAGESGK-----STI----VKQ--MKIIHEAGYSEEECKQYK 2GTP_B XBBBBBBBBXXXXXA AAA AAA AAAAAXXXXXAAAAAXXA cchchhhhphpcppc pph hcp hchhhchphpccchcphc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++ | | + ++ ++++ | ++++ +++ |+| + + AVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMT 2GTP_B AAAAAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAXXXXXXXXX hhhhppphpphhhhhchhpchchchpcphchcchcphhhhhphhccphhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ + + +| + | + + ++ ++ ++ +++ ++ ++ + + AELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPT 2GTP_B AAAAAAAAAAAAXAAAAAAAAXXXXXXXXXXAAAAAAXAAAAXXXXXXXX hchhphhcchhccpphphhhpcpcchphpcphhhhhpchcchhphphhhp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....i....:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++++++ +++ + +++++| + + + +++ + + ++++ QQDVLRTRVKTTGIVETHFTFKDL-HFKMFDVGGQRSERKKWIHCFEGVT 2GTP_B AAAAAXXXXXXXXBBBBBBBBXXB BBBBBBBXXXAAAAXXXXXXXXXXX ppchhcpchcppphhcphhphcch hhchhchpppcpcccchhhhhcphp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpch XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXX APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEP------- my_fasta_file | + ++|+ +|++++++ + ++++ + + + AIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 2GTP_B BBBBBBBXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXBBBBBBB hhhhhhhhpchchhhhcccchpchhcphchhcphhppchhpcpphhhhhp 201- 250.........:.........:.........:.........:...ddddddd 251- 300.........:.........:.........:.........:.........: ccchchhh cchhcppcphhchhhhhcchhhhpchphhhhh XAAAAAAA AAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX DREVRLAC---------RDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPP- my_fasta_file ++++ +++ + | | + | ++ +++ + +++++ KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI 2GTP_B XAAAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXXXB ccchhccchccphhphhhhchhpppphcchhhhhphphcchpccccpcch 251- 300........ddddddddd..:.........:.........:.........d 301- 329.........:.........:......... cchph hhhhhhhphpchphcpp XXXXX XXXXXXXXXXXXXXXXX ----EDAQP---VAIPLPVSLGDAGHRSS my_fasta_file +| + |+ + ++ + ++ + YTHFTCATDTKNVQFVFDAVTDVIIKNNL 2GTP_B BBBBXXXXXAAAAAAAAAAAAAAAAAAXX hphhphhpcpcphphhhchhpchhhcpph 301- 329dddd.....ddd.......:......... The seq2struc alignment: my_fasta_file ---> 2P01_A align_len=324 ene=-145.00 identity=7.407407 hpc_err=46.913579 size_err=0.000000 ins=1 del=19 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhph pphchhcphhhhhccpph XBBXXXXXXXXXXXXBBBBBXX XBBBBXXXBBBBBBXXXX MTWLPLNPIPLKDRVSMIFLQY----------GQIDVIDGAFVLIDKTGI my_fasta_file ++++ |+|++ |+|+++ + +++ + ++ ++ YSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLK 2P01_A XXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXAAAAAAAAAAAA hpcccpphchphcccppcchchcchpphhcchpchhhhhhchhchhhchc 1- 50.........:.........:..dddddddddd.......:.........: 51- 100.........:.........:.........:.........:.........: cphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppp BBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXX RTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQ my_fasta_file + ++++++ ++ +| ++ + +++ || + + | + |++|+ + + + IQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVT 2P01_A AAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXX hpcccchhhcchchcphcccpccchchhcphphhhhchphcpccchcphp 51- 100.........:.........:.........:.........:.........: 101- 150.........:......i..:.........:.........:.........: hpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcph XXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAA PGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGI my_fasta_file + +++++ + +| |+ | + ++++ + +++ | + +++ SNSLSGTQEDGLDDPR-LEKLWHKAKTSGKFSGEELDKLWREFLHHKEKV 2P01_A XXXXXXXXXXXXXXAA AAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAA ppphppppccphcchc hcchhhchcpppchppcchcchhcchhhhccch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: cppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhph AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAA EGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGV my_fasta_file + + |+ + +++ ++ + + +++ ++ ++++ ++++++ +++ + HEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQ 2P01_A AAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAA hchphhhcphpcpcchhcphhphpchpchcpphhhpchpchccchcphpp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: pchhhhhhphhhhhphhhppchhphhhchhchh chcphhhchhchhc AAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAA XAAAAAAAAAAAAA TEAAILAAGYAPAIGFVHTGKPLSFVYDIADII---KFDTVVPKAFEIAR my_fasta_file +++ ++ ++ + + ++ |++ + ++ +++ + + +++| ++ GLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELKH 2P01_A AAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAXXXXAAAAAAAAAAAAA phcchcchphpphppchchcchchhchhchhpphphpccchchhccchch 201- 250.........:.........:.........:...ddd...:.........: 251- 300.........:.........:.........:.........:.........: cphpchccchchhhcchhcppcphhc hhhhhcchhhhpchphhh XXXXXXXAAAAAAAAAAAAAAAAAAA AAAAAAAAAAXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAK------LIPLIEDVLAAGEIQPPA my_fasta_file + ++ + +++++ | + + | + +++ + | +|+ +++ FEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKE 2P01_A AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAA hchchcchphhpcphchhhcchchhcphpcpcchpcpccchhhhcpcpcc 251- 300.........:.........:......dddddd.......:.........: 301- 324.........:.........:.... hhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXX PPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++ + ++|++ | | + LGYTVKKHLQDLSGRISRARHNEL 2P01_A AAAAAAAAAAAAAAAAAXXXXXXX hphphcchhpchppchpchchpch 301- 324.........:.........:.... The seq2struc alignment: my_fasta_file ---> 1SZP_A align_len=331 ene=-88.00 identity=6.948640 hpc_err=40.181270 size_err=0.000000 ins=15 del=26 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iii...:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | | + + ++ + |+ +++++ + + ++ |+ M--VPIEKLQVNGIT-----MAD---VKKLRESGLHTAEAVAYAPRKDLL 1SZP_A X XXXXXXXXXXXX AAA AAAAAXXXXXXAAAAAAXXXAAAA h hhhcchphpphp hhc hcchccpphhphchhhhhhccchh 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhh hpchphchhhppphpphcpcch BBBBBXXXXXXAAAAAAAAAXXXBBBB BXXXXXBBBBXXXXXXXAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVW-VGEAGVRVYASGQPGGARSDKL my_fasta_file +|++++ + + + |++|+++ |+ + ++|++ ++++ |+ + + EIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDT 1SZP_A XXXXXXAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAXXXBBXXXXAAAAA chcphpchchcchhpchhchhhhphhphhchhhccpchhhhppppcphcp 51- 100.........:.........:.......d.:.........:.........: 101- 150.........:.........:.........:.........:.........: hhphc hhh ccchchchhcchhchchpchhhhccphc phcp AAAAA AAX XAAAAAAAAAAAAAAAAXXXAAAAAAAA AAAA LYQAK--LAL------DEDLRLKVVRKMFELRFGEPAPARRSVE--QLRG my_fasta_file | + +++ + + + + +++ + +| + + + + LLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 1SZP_A AAXXXBBXXXBBBBBBXXXXXAAAAAAAAXXXXXXXXXXXXXXXBBBBBB hhppphcppphpchhpchcppcpphhhphhhphphhhchpppcpchhhhc 101- 150.....dd..:dddddd...:.........:.........:....dd...: 151- 200.........:.........:.........:.....iiiii.........: hcppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhp AAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAA IEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYG my_fasta_file +|| +++ + | | +++ ++ ++ ++ |++ TEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN-----ADHQLRLLDA 1SZP_A XXXXXXXXXXAAAAAAXXXXAAAAXXXBBBBBXXX XXXAAAAAAA pcpphchhchhphhpchphchcchhpphhhhchhp hchphchhch 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccp AAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXX VTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRN my_fasta_file + ++++++ +| +++++ |++ ++++ +++ ++ ++ +|++ AAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 1SZP_A XAAAAAAXXBBBBBBBXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAXX hhphhpcpchphhhhcphhhhhcpchppcpchphcphhhhchhchhpchh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: h pchccchchhhcch hcpp cphhchhhhhcchhhh X XXXXAAAAAAAAAA AAAA AAAAAAAAAAAAAAAX P-----GEPDREVRLACRDI-------FRSS---KTLAKLIPLIEDVLAA my_fasta_file + ++ |+ + + + + ++ ++++ +++++ DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGK 1SZP_A XBBBBBBXXXAAAAAAAAXXBBBBBBBXXXXBBBBBXXXXXXXXXXXXXB cphphhhhhppphhhphcpphhhphchcchpppphhhhppppchphccpc 251- 300.ddddd...:.........:ddddddd..:.ddd.....:.........: 301- 331.........:.........:.........:. pchphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file |++ + + + + + + +| + GCQRLCKVVDSPCLPEAECVFAIYEDGVGDP 1SZP_A BBBXXBBBXXXXXXXXXBBBBBBXXXXXXXX phpchhchhcphhhhchchhhhhhccphpch 301- 331.........:.........:.........:. The seq2struc alignment: my_fasta_file ---> 3GHS_A align_len=330 ene=-140.00 identity=6.363636 hpc_err=42.424244 size_err=0.000000 ins=14 del=25 begin1=0 begin2=0 1- 50iiii.....:.....ii..:...ii....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +| | + + | ++++ + +++ + + |+||++ ----MASRILLNNGA--KMPILG--LGTWKSPPGQVTEAVKVAIDVGYRH 3GHS_A XXXBBBXXXXX BBBXXX BBXXXXXAAAAAAAAAAAAAAXXXB hhpchhhppph chhhhp hpphcphhpphpchhchhhchphch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpp hcpcc BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXX XAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGG--ARSDK my_fasta_file + + + + + +|+ ++ + |++ | + +++ ++ + + + IDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGA 3GHS_A BBXXXXXXXAAAAAAAAAAAAAXXXXXXXXXBBBBBBXXXXXXAAAAAAA hchhhhhppcpchphhhpcchccphhcccchhhhpchhhphhccphhcph 51- 100.........:.........:.........:.........:...dd....: 101- 150.........:.........:.........:.........:.........: hhhphchh hccchchchhcchhchchpchhhhcc AAAAAAAA XXAAAAAAAAAAAAAAAAXXXAAAAA LLYQAKLA----------------LDEDLRLKVVRKMFELRFGEPAPARR my_fasta_file ++ + ++ ++ + + +++ ++ + + + CQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTW 3GHS_A AAAAAAAAXXXXXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAA hpcphpchchchhchhhhhhhpphchpcchhhhccppphhhpcpphhcph 101- 150........dddddddddddddddd.....:.........:.........: 151- 200.........:.........:.........:.........:.........: phcphcph cppc hchphhhhhcphphphppcch chcchccpcp AAAAAAAA AAAA AAAAAAAAAAAXXXXXXXXXX XXXXXXXXXA SVEQLRGI--EGSR----VRATYALLAKQYGVTWNGRRY-DPKDWEKGDT my_fasta_file + + ++++ ++ + ++++ + + +++ + + ++ ++++| AAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLT 3GHS_A AAAAAAAAXXXXXXBBBBXXXAAAAAAAAXXXXXXXXXXBBBBBXXXXXX hhhcchhccphhchhphpphphhphchhhpchphchchhhpphchhhhhp 151- 200........dd....dddd.:.........:.........d.........: 201- 250.........:.........:.........:.........:.........: hpphhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhch AAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXA INQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKF my_fasta_file + | |++ +||+ + |+++++| +++ + + + + +++ QEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHN 3GHS_A XAAAAAAAAAXXXBBBBBXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXX pcchhphhppcphhhphhphhpphcchhhchcchphhcchchchhhhchp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:........ii cphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhp AAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXX DTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAG my_fasta_file |+ ++ + +++ ++ +++ +|+ + + +++ |+++++ +| KTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLL-- 3GHS_A XXAAAAAAAAAAXXXXBBXXXXXXAAAAAAAAXXXXXXXXAAAAAAAA cpphphhhchhhpcphhhhhcphphcchhcphchhchchpppchpphh 251- 300.........:.........:.........:.........:.........: 301- 330iiii.....:.........:.........: chphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + ++ +++ + ++++ + +| + ----SYNRNWRVCALLSCTSHKDYPFHEEF 3GHS_A XXXXXXXXXXXXXXXXXXXXXXXXXX phpcphchhhhhphpphcchhhhcch 301- 330.........:.........:.........: The seq2struc alignment: my_fasta_file ---> 2AL6_B align_len=375 ene=-147.00 identity=6.133333 hpc_err=41.333333 size_err=0.000000 ins=6 del=70 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccch phhhhphpph chhcphhhhhccpp X BBXXXXXXXXXXXX BBBBBXXXBB BBXXXBBBBBBXXX -M----TWLPLNPIPLKDRV-SMIFLQYGQI-----DVIDGAFVLIDKTG my_fasta_file + + +++++ | |+ ++ + +|+ + + +++ MERVLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVAC 2AL6_B XXBBBBBBXXXXXXXXXXXXBBBBBBXXXXXAAAAAAAAAAAXXXXXXXX hcchhchhhhhcpppchpphhphhchpchpchcphhpchhchhchcphhh 1- 50d.dddd...:.........:d........:.ddddd...:.........: 51- 100.........:.........:.........:....iiiii:.........: hcphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhpp XBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXX IRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASG my_fasta_file ++ + + +++ + + +++++ + + ++ ++ +|+++++ ++ YGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHP-----PEEWKYELRIR 2AL6_B BBBBBBBXXXXXBBBBXXXXXAAAAAAAAAAAXX XXXBBBBBBBX hphchphhppcchhhhhhchphpphccchchhhh hcchchchchc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.......i.:.........:.........:.........: phpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcp XXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAA QPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRG my_fasta_file + + +++ ++ +++ ++ ++++ +| | ++ ++++ ++ +| + YLPKGFLNQFTEDKPTL-NFFYQQVKNDYMLEIADQVDQEIALKLGCLEI 2AL6_B XXXXXAAAAAAXXAAAA AAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAA hhhcphhpphpccchph phhhpphcpchhhchhcphcpchhhchphhch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hcp pchchphhhhhcphphphppcchchcchccpcphpphhph AAA AAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA IEG-------SRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA my_fasta_file + +++ + + + +++++ ++++ +|++|+ | | + RRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQ 2AL6_B AAAXXXXXXXXXXXAAAAAAAAAXXXXXXXXXAAAAAAXXAAAAAAAAAA ccphpchcpphhcccpphchhccchphcchhhcphhcphchcphcchhpp 151- 200...ddddddd.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hp phhhphpchhhh hhphhhh hphhh ppc h AA AAAAAAAAAAAA AXXXXXX BBBBB XXX X AT-------SCLYGVTEAAIL-AAGYAPA--IGFVH--TGK--------P my_fasta_file ++ ++++ + +|| ++ ++ ++ | TFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGP 2AL6_B AAXXXXXXXAAAAAAAAAAAAXXXXXXXXBBBBBBBXXXXXBBBBBBBBX phcphhphpcccphhchhchhphhhchccchhchhhppphhhphchhhph 201- 250..ddddddd:.........:.d.......dd.....dd.:.dddddddd: 251- 300.........:.........:.........:.........:.........: hp hhhchhch hchc phhhchhch hccphp XX AAAAAAAA AXAA AAAAAAAAA AAXXXX LS----FVYDIADI----IKFD-------TVVPKAFEI------ARRNPG my_fasta_file + ++ +| +++ +++|++ + | ++++ EEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEP 2AL6_B XXBBBBXXXXXXXXBBBBXXXXBBBBBBBXXXXXXXXXBBBBBBXXXXXX ccphphhpccphphphhhchpphpphphpppccccccphhphchhphhch 251- 300..dddd...:....dddd.:..ddddddd:........dddddd.....: 301- 350.........:.........:.........:.........:.........: chccchchhhcchhcppcphhc hhhhhcchhhhpchphhhhh XXXAAAAAAAAAAAAAAAAAAA AAAAAAAAAAXXXXXXXXXX ----EPDREVRLACRDIFRSSKTLAK----LIPLIEDVLAAGEIQPPAPP my_fasta_file +| + +++ +| ++ | + ++ ++++ + ++ + LTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRPQKEGERALPSIPKL 2AL6_B BBBBXXXAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX hphphhphphhcphhchhcphhchhpphppphhhchpccpcchhhphhch 301- 350dddd.....:.........:......dddd.........:.........: 351- 375.........:.........:..... cch phhhhhhhhphpchphcpp XXX XXXXXXXXXXXXXXXXXXX EDA---QPVAIPLPVSLGDAGHRSS my_fasta_file + + ++ + +||+ |++ ++ ANNEKQGVRSHTVSVSETDDYAEII 2AL6_B XXXBBBXXXXXXXXXXXXXXXXXXX hppccpphcphphphpcpcchhchh 351- 375...ddd...:.........:..... The seq2struc alignment: my_fasta_file ---> 1TM2_A align_len=339 ene=-118.00 identity=6.784661 hpc_err=35.988200 size_err=0.000000 ins=25 del=34 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphh hhccchphhhhphpphchhcphhhh hccpp X BBXXXXXX XXXXXXBBBBBXXXBBBBXXXBBBB BBXXX -M---TWLPLNPI-----PLKDRVSMIFLQYGQIDVIDGAFVL--IDKTG my_fasta_file + + +|++ ++ ++ ++ +++ + +++ + + + + AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQL 1TM2_A XXBBBBBXXXXXXAAAAAAAAAAAAAAAAAXXBBBBXXXXXXXAAAAAAA hcchhhhhchhphphhpppppphpchpchhphchphcphpchphppphph 1- 50d.ddd....:...ddddd.:.........:.........:...dd....: 51- 100.........:.........:.........:.........:....iiii.: hcphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhpp XBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXX IRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASG my_fasta_file ++|++| | ++ + ++ | +| |+|++ + + + + VNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK----PE 1TM2_A AAAAAAXXXXBBBBXXXXXXXXAAAAAAAAAXXXBBBBBXXXXX XX hpphhppphchhhhphhphcphhhhhcchhpcphchhphcpcpc hc 51- 100.........:.........:.........:.........:.........: 101- 150.....iiiiiiiii.....:.........:.........:.........: phpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcp XXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAA QPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRG my_fasta_file ++ + ++++ + +++ + | + ++ ++++ + ++ CRSYY---------INQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPT 1TM2_A XXXBB BBXXXAAAAAAAAAAAAAAAXXXXXXBBBBBBXXXX hcphh hpppphcphpphhhchhhhphcccchchhhhhpphp 101- 150.........:.........:.........:.........:.........: 151- 200.........:......ii.:.........:.....iiiiiiiii.....: hcppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhp AAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAA IEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYG my_fasta_file ++ +|+ ++ + +|+ ++ + | + ++ VTDQNQWVKEAKAKIS--QEHPGWEIVTTQFGYND---------ATKSLQ 1TM2_A XAAAAAAAAAAAAAAA AAXXXXBBBBBBBXXXX AAAAAA hpcppphhcchchchp pchhphchhppphphpc hpcphp 151- 200.........:.........:.........:.........:.........: 201- 250........i:.........:.........:.........:.........: hpchhhhhhphhhhhphhhppchhphhhchhch hc hcphhhc AAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA AX AAAAAAA VTEAAILAAGYAPAIGFVHTGKPLSFVYDIADI----IK----FDTVVPK my_fasta_file ++|+ |+| + + + + + |+ | + ++ | | + + TAEGIIKA-YPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFSTPNVM 1TM2_A AAAAAAAA XXXXXBBBBXXXXAAAAAAAAAAAXXXXXXBBBBXXXAAAA phcphhch hhchchhhhhchphhhhhhphhcphccpphhhhphpphphh 201- 250.........:.........:.........:...dddd..dddd......: 251- 300.........:.........:.........:.........:.........: hhchhccphpc hccchchhhcchhcppcphhchhhhhc chh AAAAAAXXXXX XXAAAAAAAAAAAAAAAAAAAAAAAAA AAA AFEIARRNPGE---PDREVRLACRDIFRSSKTLAKLIPLIE----DVL-- my_fasta_file + + +| | |+++ ++ + + ++++++ + + ++ RPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGK 1TM2_A AAAAAAXXXXXBBBXXAAAAAAAAAAAAAAAAXXXXXXXXXBBBBXXXBB chhhpcpphcchphhchhpppchphhhhphhhcphhhphpcphchhphpc 251- 300.........:.ddd.....:.........:.........:.dddd...dd 301- 339.........:.........:.........:......... hhpchphhhhhcch phhhhhhhhphpchphcpp AXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX ----AAGEIQPPAPPEDA--QPVAIPLPVSLGDAGHRSS my_fasta_file + |+ + + + ++ + ++ + VTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNIDKYDF 1TM2_A BBBBXXXXXXXXXXXXXXBBBBXXXXBBBXXXXXXXXXX hphphppcpphhhchcppphhhhhcchhhpccphcchch 301- 339dddd.....:........dd.........:......... The seq2struc alignment: my_fasta_file ---> 3C6Q_B align_len=334 ene=-109.00 identity=5.089820 hpc_err=39.820358 size_err=0.000000 ins=29 del=29 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphc XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXB -MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIR-------- my_fasta_file | + ++ ++++ ++++++++ ++++ ++ MLTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKCDINAQLQML 3C6Q_B XXBBBBBXXXXXXAAAAAAAAAAAAAAAAXXBBBBBXXXXXXAAAAAAAA hhphphhpcphhhhhpphcpphchhpchhphcpchhhhpchchphphphh 1- 50d........:.........:.........:.........:..dddddddd 51- 100.........:.........:.........:.........:...iiii..: phhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppp BBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXX -THIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQ my_fasta_file | +|+++ ++ + + + +| |+ |+ + ESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSP----DSG 3C6Q_B AAAAAAXXXBBBBXXXXXXXXAAAAAAAAAXXXXBBBBXXXXX XXX cphhhcphpphhhhhpchphhhhphcchhchphhhhphcpcph cpp 51- 100d........:.........:.........:.........:.........: 101- 150....iiiiiiiiii.....:.........:.......ii:.........: hpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcph XXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAA PGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGI my_fasta_file +++ ++| ++++++ + ++ | + + ++ + ++ RYVY----------IGTDNYQAGYTAGLIMKELLGGK--GKVVIGTGSLT 3C6Q_B XXBB BBXXAAAAAAAAAAAAAAAAXXX XBBBBBBXXXX chhh hppcphphphphphhhcchhppc pchhhpppphp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.....iii.:.........:....iiiiiiiii......: cppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhph AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAA EGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGV my_fasta_file ++ ++++ ++++ + + +++++ + | ++ AMNSLQRIQGFKDAI---KDSEIEIVDILNDCED---------GARAVSL 3C6Q_B XAAAAAAAAAAAAAA XXXXXBBBBBBBXXXX AAAAAAA hhpphpchpphcchh ccpchchhchhpchcc phchhph 151- 200.........:.........:.........:.........:.........: 201- 250.......i.:.........:.........:.........:.........: pchhhhhhphhhhhphhhppchhphhhchhch hchc phhhch AAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA AXAA AAAAAA TEAAILAAGYAPAIGFVHTGKPLSFVYDIADI---IKFD-----TVVPKA my_fasta_file +||| +| + + + +|+ ++++++ + + + ++ ++| AEAALNA-HPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDI 3C6Q_B AAAAAAA XXXXXBBBBXXXXAAAAAAAAAAAXXXXXXXBBBBBXXXAAA hchhhph hhchchhhphhhhpphhphhhhcphpchpchchhhhcpphch 201- 250.........:.........:.........:..ddd....ddddd.....: 251- 300.........:.........:.........:.........:.........: hchhccphpc hccchchhhcchhcppcphhchhhhhcchh hh AAAAAXXXXX XXAAAAAAAAAAAAAAAAAAAAAAAAAAAA AX FEIARRNPGE----PDREVRLACRDIFRSSKTLAKLIPLIEDVL----AA my_fasta_file + + ++ ++ ++ ++++ + +++ ++ ++ LQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKVKVDG 3C6Q_B AAAAAXXXXXBBBBBXAAAAAAAAAAAAAAAAAXXAAAAAXXXXBBBBXX hphhccphhphphppchhhhphhphphhhhhpchphppphhhhhchchcp 251- 300.........:dddd.....:.........:.........:....dddd.: 301- 334.........:.........:.........:.... pchphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ---GEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++| ++ + + + ++ |++++ +++ + + KVDYVIDTGVDVVTPENLDEYLKKMEELGIPIKF 3C6Q_B BBBBBBBXXBBBBXXXXAAAAAAAAAAXXXXXXX chchhhcpphchhphcphcchhcchcchphhhch 301- 334ddd......:.........:.........:.... The seq2struc alignment: my_fasta_file ---> 2ZJO_A align_len=444 ene=-76.00 identity=5.630631 hpc_err=33.783785 size_err=0.000000 ins=0 del=139 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhh ccchphhhhph X BB XXXXXXXX XXXXBBBBBXX -----------M---TW-LPLNPIPL--------KDRVSMIFLQY----- my_fasta_file + + ++ ++++ +++ +++ NSSPPAVPQAFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATL 2ZJO_A XXXXXXXXXXXXBBBBBXXXXXXXXXAAAAAAAAXXXXBBBBBXXAAAAA ppphhhhhphhphhhhhhhppppcppchhhhhhhpphchhhhphphhhph 1- 50ddddddddddd.ddd..d.:......dddddddd.....:.....ddddd 51- 100.........:.........:.........:.........:.........: pphchhcphhh hhccpphcphhh hpphhh XBBBBXXXBBB BBBXXXXBBBBB XXXXBB ------GQIDVIDGAFV----LIDKTGIRTHIP-----------VGSVAC my_fasta_file ++ |++ + +| + +| ++ +|+ + GFGAYMSKAHGVDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDI 2ZJO_A AAAAAAAAAXXXXXBBBXXXXBBXXXXXBBBBBAAAAAAXXXXXXXXXXB phphhhpchhphchphcpphcphppphhhphpphpchhhcpphppphhch 51- 100dddddd...:.......dddd........:...ddddddddddd.....: 101- 150.........:.........:.........:.........:.........: hhhchppchp hhhhchhhp hpph BBBBXXXXXX AAAAAAAAA XXXB IMLEPGTRVS----HAAVRLAAQ-----------------------VGTL my_fasta_file || +++ + + + +| + IMCDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNI 2ZJO_A BBBXXXXXXXAAAAAAAAAAAAAXXXXXXXBBBBBBXXXXXXXXXXXXXB hhhcchhppcppphhphpphhcphcphphchhhhhphphhpphphhhhph 101- 150.........:dddd.....:...ddddddddddddddddddddddd...: 151- 200.........:.........:.........:.........:.........: hhhh pchph c hhh ppph pphcpcchhhphchh h BBBB XXXXX B BBB XXXX XXXAAAAAAAAAAAA X LVWV-GEAGV--R--VYA----SGQP-----GGARSDKLLYQAKLA---L my_fasta_file ++ +|+ + + + + +++ +++ +|||+ EEIALSNTGEIPFYGKAIPIETIKGGRHLIFCHSKKKCDELAAKLSALGI 2ZJO_A BBBBXXXXXXBBBXXBBBXXXXXXXXBBBBBXXXAAAAAAAAAAAAXXXX cchhhppppchhhhpchhhhcphcppchhhhhhpccchcchhhchphhph 151- 200....d....:dd.dd...dddd....ddddd........:......ddd: 201- 250.........:.........:.........:.........:.........: c cchchchhcchhch chpchhhhccphc ph X AAAAAAAAAAAAAA AAXXXAAAAAAAA AA D----EDLRLKVVRKMFEL-----RFGEPAPARRSVE----QL------- my_fasta_file + + +++++|++ + + +++ ++ ++ HAVAYYRGLDVSVIPASGNVVVVATDALMTGFTGDFDSVIDCNTCVTQTV 2ZJO_A XBBBBXXXXXXXXXXXXXXBBBBBXXXXXXXXXXXXXBBBBXXBBBBBBB hhhhhhcphchphhhhppphhhhhpchhhpphppchcphhchpphhppph 201- 250.dddd....:.........ddddd.....:.......dddd..ddddddd 251- 300.........:.........:.........:.........:.........: cphcppc hchphhhhhcphphphpp cchchcchccp AAAAAAA AAAAAAAAAAAXXXXXXX XXXXXXXXXXX -RGIEGSR--------VRATYALLAKQYGVTWNG-----RRYDPKDWEKG my_fasta_file + + + + |++++++ + + + + + ++ ++ DFSLDPTFTIETTTMPQDAVSRSQRRGRTSRGRRGIYRFVTPGERPSGMF 2ZJO_A BXXXXXXXBBBBBBBBXXAAAAAAAAXXXXXXXXBBBBBXXXXXXXXXXX chphchphphcppphhpchhpcppccpcppcpccphhchhphpcchpphh 251- 300d.......dddddddd...:.........:....ddddd:.........: 301- 350.........:.........:.........:.........:.........: cphpphhphhpphh hphpchhhhhhphhhhhphhhppchhphhhchhch XAAAAAAAAAAAAA AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA DTINQCISAATSCL-YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADI my_fasta_file | +++|++ ++ | | |+|+++ +++| + + ++++++ + ++++ DSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVF 2ZJO_A XAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAA cpphhhchhchphhhhchphhcpphchchhhpphphhhhpchhchhcphh 301- 350.........:....d....:.........:.........:.........: 351- 400.........:.........:.........:.........:.........: hchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchh AXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA IKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVL my_fasta_file + + + + ++ ++ +++|+ + + |+ ++ ++ + + TGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLT 2ZJO_A AXXXXXXAAAAAAAAAAXXXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXX pphphhchhhhpppcphpcphhhhhhhphphhhchphhhhphcphhchhp 351- 400.........:.........:.........:.........:.........: 401- 444.........:.........:.........:.........:.... hhpchphhh hhcchphhhhh hhh phpchphcpp AXXXXXXXX XXXXXXXXXXX XXX XXXXXXXXXX AAGEIQPPA--PPEDAQPVAIP--LPV-------SLGDAGHRSS my_fasta_file + +++ + + |+++ |+ + + | ++ RLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVV 2ZJO_A XXXXXXXXXBBXXXXXXXXXXXBBXXXAAAAAAAAAAAXXXXXX chchphhphphhhhchphhppchphphhhpchhhhhhphchchh 401- 444.........dd........:..dd...ddddddd.....:.... The seq2struc alignment: my_fasta_file ---> 2RD0_A align_len=1077 ene=467.00 identity=0.835655 hpc_err=14.113277 size_err=0.000000 ins=0 del=772 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph X BB -----------------------------------M-----TW------- my_fasta_file + + SYYHHHHHHDYDIPTTENLYFQGAMGSMPPRPSSGELWGIHLMPPRILVE 2RD0_A XXXXXXXXXXXXXXXXXXXXXXXXBBBBBBBXXXXXBBBBBBBXXXXAAA phhhhhhhhchchhppcphhhpphhpphhhchpppchhphhhhhhchhhc 1- 50ddddddddddddddddddddddddddddddddddd.ddddd..ddddddd 51- 100.........:.........:.........:.........:.........: hhhphhhhc cchphhhh XXXXXXXXX XXXBBBBB ---------------LPLNPIPLK------DRVSMIFL------------ my_fasta_file + ++ + ++ + +| CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSV 2RD0_A AAAAAAAAXXXXXXXXXXXXXXXXBBBBBBXXXBBBBBXXXXXXXXXXXX hhhhpphhhphchhcchphhphchchhcchcchhhhphhpccpphhhhph 51- 100ddddddddddddddd....:....dddddd........dddddddddddd 101- 150.........:.........:.........:.........:.........: php phch XXX BBBB QYG-QIDV------------------------------------------ my_fasta_file + + + TQEAEREEFFDETRRLCDLRLFQPFLKVIEPVGNREEKILNREIGFAIGM 2RD0_A XXXBBBBBXXXXXXAAAAAXXXXAAAAXXXXXXXXXXXXAAAAAAAAAXA ppchcccchhccpcchhchchhphhhchhchhppcccchhpcchphhhph 101- 150...d....dddddddddddddddddddddddddddddddddddddddddd 151- 200.........:.........:.........:.........:.........: hcp hh XXX BB -----------------------------------------IDG----AF my_fasta_file ++ ++ PVCEFDMVKDPEVQDFRRNILNVCKEAVDLRDLNSPHSRAMYVYPPNVES 2RD0_A AAAAAAAAAAAXXXXAAAAAAXXXXXXXXXXXXXXXXAAAAXXXBBBBBB hhhchchhcchchpchccphhphhcchhchcchpphhpchhhhhhhphcp 151- 200ddddddddddddddddddddddddddddddddddddddddd...dddd.: 201- 250.........:.........:.........:.........:.........: hhhccpph cphhh BBBBXXXX BBBBB VLIDKTGI-----RTHIP-------------------------------- my_fasta_file + +++ +| +| SPELPKHIYNKLDKGQIIVVIWVIVSPNNDKQKYTLKINHDCVPEQVIAE 2RD0_A BBBBXXXXBBBBBBBBBBXXXXAAAAAAAAAAAAAXXXXXXAAAAAXXXX phchhchhhpchccpphhhhhhhhhphppccpchphchphchhhcphhhc 201- 250........ddddd.....dddddddddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: hpph hhhh hc hppchp hhhh chhhp XXXX BBBB BB XXXXXX AAAA AAAAA -VGSV-ACIM-----LE---PGTRVS-----HAAV----------RLAAQ my_fasta_file + ++ | + + + + + + AIRKKTRSMLLSSEQLKLCVLEYQGKYILKVCGCDEYFLEKYPLSQYKYI 2RD0_A XXXXXBBBBBXXXXXBBXXXXXXXXXAAAAAAAAAXXXXBBBBBBAAAAA hhcccpcphhhppcphchhhhchppchhhchhphcchhhcchhhpphchh 251- 300d....d...:ddddd..ddd......ddddd....dddddddddd....: 301- 350.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RSCIMLGRMPNLMLMAKESLYSQLPMDCFTMPSYSRRISTATPYMNGETS 2RD0_A XXXXXXXXXXXXXXXXXXXXXXBBBBBBBXXXXXXXXXXXXXXXBBBBBX cphhhhpchhphhhhhccphhpphhhchhphhphpcchpphphhhppcpp 301- 350dddddddddddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file TKSLWVINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNT 2RD0_A XXXXXXXBBXXXXXXXXXXBBBBBBBXXXXXXXXXXXXBBBBBXXXXXXX pcphhhhpphhchchhhhphhphphcchcchhhcpphhhppchhhcphpp 351- 400dddddddddddddddddddddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: hpp hhhhh pchph XXX BBBBB XXXXX --------------VGT-LLVWV----------------------GEAGV my_fasta_file ++ + ++ + QRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLA 2RD0_A XXXBBBBXXXXXXXXXXBBBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXX pchhhpphchpchhphchhhhchhchhchhhphhphcpccphccchhhhh 401- 450dddddddddddddd...d.:...dddddddddddddddddddddd....: 451- 500.........:.........:.........:.........:.........: chhh ppphp ph cpc BBBB XXXXX XX AAA --RVYA-----SGQPG-----GA-RSD----------------------- my_fasta_file + +++| + +++ WGNINLFDYTDTLVSGKMALNLWPVPHGLEDLLNPIGVTGSNPNKETPCL 2RD0_A BBBBBBXXXXXXXXXXAAAAAXXAAAAXXXXXXXXXXXXXXXXXXXXXXX hpphphhchpcphhppchhhphhhhhhphcchhphhphpppphpccphhh 451- 500dd....ddddd.....ddddd..d...ddddddddddddddddddddddd 501- 550.........:.........:.........:.........:.........: chhhphchh hc cchc hchhcchhchch AAAAAAAAA XX AAAA AAAAAAAAAAAA -KLLYQAKLA---------LD--EDLR------LKVVRKMFELRF----- my_fasta_file ++ ++ + + +++ +++ + + ++ ELEFDWFSSVVKFPDMSVIEEHANWSVSREAGFSYSHAGLSNRLARDNEL 2RD0_A XAAAAAAAAAXXXXXXXXXXXAAAAAAXXXXXXAAAAAAAAAAAAXXXXX chchchhpphhchhchphhcchhphphpcchphphphhphppchhccpch 501- 550d........:ddddddddd:.dd....dddddd......:.....ddddd 551- 600.........:.........:.........:.........:.........: pch hhhcc phcphc phcppch XXX AAAAA AAAAAA AAAAAAA ------------GEP---------APARR--SVEQLR-GIEGSRV----- my_fasta_file + ++ ++ ++ +++++ RENDKEQLKAISTRDPLSEITEQEKDFLWSHRHYCVTIPEILPKLLLSVK 2RD0_A XXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXAAAAAAXAAAAAAAXXXXX ccpcccphchhppcchhpchpcpccchhhphchhhhphhchhhchhhphc 551- 600dddddddddddd...ddddddddd.....dd......d.:.....ddddd 601- 650.........:.........:.........:.........:.........: chphhhhhcp h phphp AAAAAAAAAA X XXXXX ----RATYALLAKQ--Y------------GVTWN---------------- my_fasta_file ++ + ++ + WNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYL 2RD0_A XXXXAAAAAAAAAAXXXAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAA hppccchhphhhhhcchhhhchcphhchhchphhchhhcphhhchhcchh 601- 650dddd.....:....dd.dddddddddddd:....dddddddddddddddd 651- 700.........:.........:.........:.........:.........: pcc hchcchc cpc XXX XXXXXXX XXX -GRR-----------------------YDPKDWE-----------KGD-- my_fasta_file ++ + ++ +++ TDDKLSQYLIQLVQVLKYEQYLDNLLVRFLLKKALTNQRIGHFFFWHLKS 2RD0_A AXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAXXXAA pccchpphhhphhphhchcphhcphhhchhhcchhpppchphhhhhhhcp 651- 700d...ddddddddddddddddddddddd..:....ddddddddddd...dd 701- 750.........:.........:.........:.........:.........: phpp AAAA TINQ---------------------------------------------- my_fasta_file + EMHNKTVSQRFGLLLESYCRACGMYLKHLNRQVEAMEKLINLTDILKQEK 2RD0_A AAAAXXXBBBXXBBBBBBXXXXXXXXBBXXXXXXXBBBBBXXXXXXXXXX chhpcphppchphhhcphhchhphhhchhpcphchhcchhphpchhcpcc 701- 750....dddddddddddddddddddddddddddddddddddddddddddddd 751- 800.........:.........:.........:.........:.........: hhphhpphhhphpchhhhh hphhhhhphhhp AAAAAAAAAAAAAAAAAAA XXXXXXBBBBBX --------------CISAATSCLYGVTEAAILA-----AGYAPAIGFVHT my_fasta_file + + + + ++ + + |+ + + ++++ KDETQKVQMKFLVEQMRRPDFMDALQGFLSPLNPAHQLGNLRLEECRIMS 2RD0_A XXXBBBBBBBXXXXAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXBBBBBX cccppchphchhhcphcchchhchhpphhphhphhhphpphchcchchhp 751- 800dddddddddddddd.....:.........:...ddddd.:.........: 801- 850.........:.........:.........:.........:.........: p chhp hhhch hchh c X XXXX AAAAA AAAA X G-----KPLS----FVYDI----------------ADII-----K----- my_fasta_file + ++ + +| SAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENI 2RD0_A XBBBBBXXXXBBBAAAAAAXXXXXXXXXXXXXXXXAAAAXXXXXXAAAAA phcchhhhphcphchhpchhhpppchhhcppcchcpchhphphhchhcph 801- 850.ddddd...:dddd.....dddddddddddddddd....ddddd.ddddd 851- 900.........:.........:.........:.........:.........: hcphhhchhchhc cph AAAAAAAAAAAAA XXX -----FDTVVPKAFEIAR-----------------------------RNP my_fasta_file |++ + ++ ++ ++ WQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFN 2RD0_A AAAAAAAAAAAAAAAAAAXXXXXXXXXBBBBXXXXBBBXXXXXXXXXXXX hpppphchchhhhphhphpchhphhchhcpphphhphphcpphcphhphp 851- 900ddddd....:........ddddddddddddddddddddddddddddd..: 901- 950.........:.........:.........:.........:.........: pchc c chchhhcchhcppcphhch hhhhcchhh XXXX A AAAAAAAAAAAAAAAAAAA AAAAAAAAA GEPD-----R-----------EVRLACRDIFRSSKTLAKL-IPLIEDVLA my_fasta_file +++ +++++++ +++ + ++ + SHTLHQWLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMV 2RD0_A XXXXAAAAAAXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAXAAAAAAAAA phphhphhcccpcpchhchhhchhpcphhphhhhphhhphpcchppphhh 901- 950....ddddd:ddddddddddd........:.........:d........: 951-1000.........:.........:.........:.........:.........: hpc hphhhh hcchph XXX XXXXXX XXXXXX -------------AGE------IQPPAP----------------PEDAQP my_fasta_file + ++++++ + KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTK 2RD0_A XXXXXXXXXXXXXXXXAAAAAAXXXXXXAAAAAAAAAAAAAAAAXXXXXX cccpphhhhchphhhchcccchphcccchhhhhppchhhhhpcphpchpc 951-1000ddddddddddddd...dddddd......dddddddddddddddd.....: 1001-1050.........:.........:.........:.........:.........: h hhhhhhphp X XXXXXXXXX V--------------------------------AIPLPVSLG-------- my_fasta_file + +++ |+++ TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSFDDIAYIR 2RD0_A XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAA pcchcchpchhhchhhhhcphhphhhphhphhhppphhchpphcchhhhc 1001-1050.dddddddddddddddddddddddddddddddd......:..dddddddd 1051-1077.........:.........:....... chphc pp XXXXX XX ---DAGHR-----------------SS my_fasta_file + + KTLALDKTEQEALEYFMKQMNDAHHGG 2RD0_A AAAXXXXXAAAAAAAAAAAAAAAAAXX cphhhccpcpchhchhhcphpchhhpp 1051-1077ddd.....ddddddddddddddddd.. The seq2struc alignment: my_fasta_file ---> 1CX4_A align_len=333 ene=-74.00 identity=5.105105 hpc_err=33.033034 size_err=0.000000 ins=50 del=28 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhphhhhccc hphhhh phpph XBBX XXXXXXXXXX XBBBBB XXXBB ---MTWL-----------PLNPIPLKDR----------VSMIFL-QYGQI my_fasta_file +++ +++ + + +++ + + RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHV 1CX4_A XXXXXXXAAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAXBBBBBXXXXBB chhhhcpccpcpchpchhcchhhhcphchcphpphhchhhcchhccpchh 1- 50ddd....ddddddddddd.:........dddddddddd.:....d....: 51- 100.........:.........:.........:.........:.........: c hhcphhhhhccpphcphhhhpphhhhhhchppchphhhhchhhphp B BXXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXX D---VIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVG my_fasta_file + ++ +| || + + |++ + |+| ++ +| ++ IDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 1CX4_A BXXXXXXXBBBBBBBXBBBBBBBBXXBBBBBBBBBXXXBBXAAAAAAXXX hcppccpcphhhhccpphchhhchcphpchhpphcpcpphpchhhhhpph 51- 100.ddd.....:.........:.........:.........:.........: 101- 150......i..:.....iiii:..iiii...:....ii...:.........: phhhhhpchphchhhppphpphcpcchhhphchhhccchchchhcchhch XBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAA TLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFEL my_fasta_file + + ++ |++ + +++ + + |++ + + RAATIT-ATSPGALW----GLD----RVTFRRII--VKNNAKKRKMYESF 1CX4_A XXXBBB BXXXBBBB BBB AAAAAAAA AAAAAAAAAAAAAA chhphp hpphphhh phc chphcchh hcpphcccchhcph 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiii..:.........:.........:.........: chpchhhhccphcphcphcppchchphhhhhcphphphppcchchcchcc AAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXX RFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEK my_fasta_file ++ +| + |++++ + + + |+ + + +++ IESLP------------FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGD 1CX4_A AAXXX XXXXXXAAAAAAAAAAXBBBBBXXXXBBBXXXX hcphh hhcphchpcchchhchhppchhpcpcphhhppc 151- 200.........:.........:.........:.........:.........: 201- 250..iiiiiiiiii.......:.........:.........:.........: pcphpphhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhch XXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA GDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADI my_fasta_file + + +| ++ + +++++++ + + ++ + + SA----------DSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ 1CX4_A XX XBBBBBBBBBBBBBBBXXXBBBBBBBXXXXBBXXAAAA ph cphhhhcppchchphcccpcpchccpphhchhchhcpp 201- 250.........:.........:.........:.........:.........: 251- 300..i......:.........:.........:.........:.........: hchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchh AXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA IKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVL my_fasta_file + +++ +++ ++ +++|| ++ + +++ + + + YF-GELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA 1CX4_A AX XXXXXBBBBBBBBBBBBBBAAAAAAAXXXXAAAAAAAAAAAAAAAAA hh pchhhhppchchhphhhhpphchhhhchphhcchhphhhchhccphh 251- 300.........:.........:.........:.........:.........: 301- 333.iiiiiiiiiiiiiiii..:.........:... hhpchphhhhhcchphhhhhhhhphpchphcpp AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + +++ |+|+ + ++ T----------------YEEQLVALFGTNMDIV 1CX4_A A AXXXXXXXAXXXXXXX p hccphhhhhppphchh 301- 333.........:.........:.........:... The seq2struc alignment: my_fasta_file ---> 2Q6D_B align_len=333 ene=-103.00 identity=6.606606 hpc_err=42.042041 size_err=0.000000 ins=26 del=28 begin1=0 begin2=0 1- 50.ii......:.....iii.:.........:.........:.........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ + ++ + +++++ |++ +++++|+ + |+++ S--SGFKKLVSPSSA---VEKCIVSVSYRGNNLNGLWLGDSIYCPRHVL- 2Q6D_B X XXXXXXXXXXAA AAXXBBBBBBXXBBBBBBBBXXBBBBBXXXX p pphcchhphpph hcchhhphphcppphpphhhpcphhhhchhh 1- 50.........:.........:.........:.........:.........: 51- 100iiii.....:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchp h chhhpp BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXX X BBBBXX CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG--V---RVYASG------ my_fasta_file ++ + ++|++ | ++ +| + ++ + |+ + + ----GKFSGDQWGDVLNLANNHEFEVVTQNGVTLNVVSRRLKGAVLILQT 2Q6D_B XXXXXXAAAAAAAAXXXXXBBBBXXXXXBBXBBBBBBBXXBBBBBB pchppcphpchhphhpphchchhpppphphphhpcchcphhhhhpp 51- 100.........:.........:.........:..dd.ddd.:....dddddd 101- 150.........:.........:.........:.........:.........: phpphcpcc hhhphch hh ccchchchhcchhch XXXXXAAAA AAAAAAA AX XAAAAAAAAAAAAAA QPGGARSDK---LLYQAKL--------AL------DEDLRLKVVRKMFEL my_fasta_file + + | +| + + ++ ++ |+ +++ ++| AVANAETPKYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIRASFL 2Q6D_B XXXXXXXXXBBBXXXXXXXBBBBBBBBXXBBBBBBBBBXXXXXXXXXXXX hhhphcphchchhchphpcphphhhphppphhphhhhphcpppphchphh 101- 150.........ddd.......dddddddd..dddddd....:.........: 151- 200.........:.........:.........:.........:.........: chpchhhhccphcphcphcppchchphhhhhcphphphppcchchcchcc AAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXX RFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEK my_fasta_file ++++++ ++ ++ + ++++ +++ + | + ++ ++ ++ +++ AGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVA 2Q6D_B XXXXXXBBBBBBXXBBBBBBBBBBBBXXXBBBBBXXXXXXXXXXXXXXXX hphhpphphphccphhphhhhhhhchhphhhpppchhpchhpphhccchh 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.iiiii...:..iiiiiiii pcphpphhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhch XXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA GDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADI my_fasta_file + + + +++ + + ++ + ++ + ++ + + +| QRVPPDNLVTNNIVAWLYAAIISVKESSFSQ-----PKWLES-------- 2Q6D_B XXXXXXXXXAAAAAAAAAAAAAAAAXXXXXX XXXXXX pchhhcphhppphhhhhhhhhhphccpphpp hchhcp 201- 250.........:.........:.........:.........:.........: 251- 300i.i......:.........:.........:.........:.........: hchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchh AXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA IKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVL my_fasta_file ++ + + | |++ |+ + + ++ + + || ++|++++ -T-TVSIEDYNRWASDNGFTPFSTSTAITKLSAITGVDVCKLLRTIMVKS 2Q6D_B X XXXAAAAAAAAAXXXXXXXXXXAAAAAXAAAAXXXAAAAAAAAAAAA p phphcchpchhpcpphphhpppphhpchphhpphchhchhcphhhcp 251- 300.........:.........:.........:.........:.........: 301- 333.i.......:.........:.........:... hhpchphhhhhcchphhhhhhhhphpchphcpp AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file | ++ +| + ++++++ + +++ |++ + A-QWGSDPILGQYNFEDELTPESVFNQVGGVRL 2Q6D_B A XXXXXXXXXXXXXXXXXXAAAAAAAAXXXXX h phppchhhpphphccchphcphhpphpphch 301- 333.........:.........:.........:... The seq2struc alignment: my_fasta_file ---> 1Y8R_E align_len=547 ene=-15.00 identity=4.753199 hpc_err=28.884825 size_err=0.000000 ins=0 del=242 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhh h phh hhccchphhhh XBBXX X XXX XXXXXXBBBBB MTWLP---------L-----NPI-----------PLKDRVSMIFL----- my_fasta_file + +|| + + + + ++ + SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTID 1Y8R_E XXXXXAAAAAAAAAXBBBBBXXXAAAAAAAAAAAAAXXXBBBBBBXXXXX pcphhcchhchhhppchhhhphpphphchhcphhhpphphhchhchcphc 1- 50.....ddddddddd.ddddd...ddddddddddd.....:.....ddddd 51- 100.........:.........:.........:.........:.........: phpphchhcphhh hhccpph cphhh hp XXXBBBBXXXBBB BBBXXXX BBBBB XX -----QYGQIDVIDGAFV---------LIDKTGI-RTHIP-------VG- my_fasta_file +++ +++++++ |++++ ++ VSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNV 1Y8R_E XXXXXXXXXXXXXXXXXXAAAAAAAAAXXXXXXXBBBBBBXXXXXXXXXA hpphpcphhhpcchhpcpchphhccphhphhhchphhhhhcphhphchph 51- 100ddddd....:........ddddddddd..:....d....:ddddddd..d 101- 150.........:.........:.........:.........:.........: phhhhhhchppc hphhhhchhhphpp hhhhhpchphchhh XXBBBBBBXXXX XXAAAAAAAAAXXX BBBBBXXXXXBBBB ---SVACIMLEPGTR---VSHAAVRLAAQVGT--LLVWVGEAGVRVYA-- my_fasta_file + + + | +++ |++++ ++++ |+ |++++ EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKK 1Y8R_E AAAXXXXBBBBXXXXAAAAAAAAAAAAAAXXXBBBBBBBXXBBBBBBBXX chhcphhhhhphhcpchhcphhpchhhhhchhhhcppphphhpphpphcc 101- 150ddd......:.....ddd.:.........:..dd.....:........dd 151- 200.........:.........:.........:.........:.........: ppphpphcpcchhhphchhhccchchchhcchhchch XXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAA -------SGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRF------ my_fasta_file +++++ +| +++ +++ + + ++ + + + | ++| GVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDAD 1Y8R_E XXXXXXXXXXXXXXXXXXAAAAAXXXXXAAAAAAAAAAAAAAAAXXXXXX phpchhchhhchppcphhphphcpphpchhhhhhhhchhhpphhpccchc 151- 200ddddddd..:.........:.........:.........:....dddddd 201- 250.........:.........:.........:.........:.........: pchhhhccphc phcphcpp chchphh hhhc XXXAAAAAAAA AAAAAAAA AAAAAAA AAAA --------------GEPAPARRSVE---QLRGIEGS--RVRATYA-LLAK my_fasta_file +++ ++|+++ + ++ +| ++ ++ + | QEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVK 1Y8R_E XXXXXXXXXXXXXXXXXAAAAAAAAXXXAAAAAAAAXXAAAAAAAXXXXX pchphcchchchhhchpchchchchppccpchcchppcchhcppphchhc 201- 250dddddddddddddd.....:.....ddd.:......dd.:.....d...: 251- 300.........:.........:.........:.........:.........: phphphppcch chcchccpcphpphhphhpphhhphpchhhhhhph AXXXXXXXXXX XXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX QYGVTWNGRRY----DPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + ++ ++ ++|+| | + ++ ++|++ +++ +| |+++++ LFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETNASDQQNEP 1Y8R_E XXXXXXXXXXXAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAXXX hhpchhccchchhhphcchhcccchhhhhchhchppppccpphpcpppch 251- 300.........:.dddd....:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcph hhchhchhccphpc XXXBBBBBXXXXXXAAAAAAAAAXAAAA AAAAAAAAAXXXXX APAIGFVHTGKPLSFVYDIADIIKFDTV--------VPKAFEIARRNPGE my_fasta_file + + +++++ +| ++ + +| ++ | ++ ++ + + QLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMD 1Y8R_E XXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAXXXXX phphccpphhchcphhchhpcphcphchhhhccpcphchhhcccchphhc 301- 350.........:.........:........dddddddd...:.........: 351- 400.........:.........:.........:.........:.........: hccchchhhcchhcppcph XXAAAAAAAAAAAAAAAAA PDREVRLACRDIFRSSKTL------------------------------- my_fasta_file + ++ +++|| + + + FVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGL 1Y8R_E XAAAAAAAAAAAAAAAAAAXXXXXXXXXBBBBXXXXXXXXXXBBBBXXXX hhpphhphchhhhphphcpchchcphhpphhhhhhppphhhhphhhhcph 351- 400.........:.........ddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: hchhhhh cchh AAAAAAA AAAA ------------------------AKLIPLI-EDVL-------------- my_fasta_file + +++ KILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVR 1Y8R_E XXXXXXXXXXXXBBBBBBXXXXXXAAAAAAAXAAAAXXXXXXBBBBXXXX chhppchcphcphhhpcphphccchhhhhhhchhphphhhhhpchchphc 401- 450dddddddddddddddddddddddd.....:.d....dddddddddddddd 451- 500.........:.........:.........:.........:.........: h A -------------------------------------------------A my_fasta_file LNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNH 1Y8R_E XBBBBXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXXBBBBBBBBBXX hphhchphhphpcchhccchhhhhhchphccpcpphhhppccpcpchpph 451- 500ddddddddddddddddddddddddddddddddddddddddddddddddd: 501- 547.........:.........:.........:.........:....... hpchphh hhhc chphhh hhhhhphpchphcpp XXXXXXX XXXX XXXXXX XXXXXXXXXXXXXXX AGEIQPP---APPE---DAQPVA---------IPLPVSLGDAGHRSS my_fasta_file + ++ + ++++ | +++ ++|++ +++ + KKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDA 1Y8R_E XXXXXXXBBBXXXXBBBXXXXXXBBBBBBBBBXXXXXXXXXXXXXXX cchpchphcpppchphcchhpchphhhphhhpcchpcchchchhpch 501- 547.......ddd....ddd..:...ddddddddd.......:....... The seq2struc alignment: my_fasta_file ---> 1ZVS_D align_len=322 ene=-38.00 identity=5.279503 hpc_err=40.062112 size_err=0.000000 ins=44 del=17 begin1=0 begin2=0 1- 50iiiiiiiiiiiii......:i........:iiiii....:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +++ + + +++++| ++++ + + ++ -------------GSHSMKY-FYTSMSRPG-----RGQPRFIAVGYVDDT 1ZVS_D XXBBBBB BBBBBBXXX XXXXBBBBBBBBXXB pphphch hhpphpchp cpphchhhhphhccp 1- 50.........:.........:.........:.........:.........: 51- 100.........:.iiiiiiiii...iii...:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + +++ + | + + + + +| ++ + ++ QFVRFDSDAAS---------QRM---EPRAPWV----EQEGPEYWDRETR 1ZVS_D BBBBBBXXXXX XXX BBXXAAA AXXXXXAAAAAAA phhchcpchhp pch chchhhh cpcphchhcccpc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpch hhhcc phc AAAAAAXXAAAAAAAAAAAAAAAAXXX AAAAA AAA YQAKLALDEDLRLKVVRKMFELRFGEP-----------APARR----SVE my_fasta_file +++ +++ ++ | + + + ++ + +|+ | ++ NMKTETQNAPVNLRTLLRYYNQSEAGSHTLQRMVGCDLGPDGRLLRGYEQ 1ZVS_D AAAAAAAAAAAAAAAAAAAAXXXXXXXBBBBBBBBBBBXXXXXBBBBBBB phcpcppphhhphcphhchhpppchpphphpchhphchphcpchhcphcp 101- 150.........:.........:.......ddddddddddd.:...dddd..: 151- 200.........:.........:.........:.........:.........: phcphcppchchphhhhhcphphphppcchchcchccpcphpphhp hhp AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAA AAA QLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCIS-AAT my_fasta_file + + + ++ ++ + ++ + |+ + + ++ + + + YAYDGKDYIALNEDLRSWTAADVAAQNTQRKWEAADVAESMRAYLEGQCV 1ZVS_D BBBXXBBBBBBXXXXXXBBBXXXXAAAAAAAAAAXXAAAAAAAAAAXAAA hhhcpcchhhhpcchcphphhchhhppppcchchhchhcphchhhcpphh 151- 200.........:.........:.........:.........:......d..: 201- 250.........:.........:.........:.iiiiiiiii.........: phhhphpch hhhhhphhhhhphhhppchhphhhchhchhchcphhhchh AAAAAAAAA AAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAA SCLYGVTEA-AILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAF my_fasta_file | +|+ +++ + ++| + |++++ + +++| + +| EWLPRYLEKGKETLQRTDPPKTHVTHHPVSD---------HEATLRCWAL 1ZVS_D AAAAAAAAAXAAAAXXXXXXBBBBBBBBXXX XXBBBBBBBB chhhchhccpccphpcpchhcphhphhhhpc hchphchhhh 201- 250.........d.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: chhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhh AAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX EIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPP my_fasta_file ++ +++ + +++ ++ ++ |+ +++++ | ++ +++++ GFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQR 1ZVS_D BBXXXXBBBBBBBXXBBXXXXBBBXXXBBXXXXXBBBBBBBBBXXXXXXX phhhhchphphpccpccpppcpchhcpchhpcpphpchhhhhhhppccpc 251- 300.........:.........:.........:.........:.........: 301- 322.........:.........:.. cchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXX EDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + + ++||++ +++++++ YTCHVQHEGLPKPHTLKWEPHH 1ZVS_D BBBBBBBXXXXXXBBBXXXXXX hphhhphcphhchhphchchhh 301- 322.........:.........:.. The seq2struc alignment: my_fasta_file ---> 1CP2_A align_len=309 ene=-105.00 identity=7.766990 hpc_err=37.216827 size_err=0.000000 ins=40 del=4 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.iiiii...: h phhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpph X BBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX M-TWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file | +++ + +++| +|+ + + | ++ + + + MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA-----DSTR 1CP2_A XBBBBBBBXXXXXAAAAAAAAAAAAAXXXXXBBBBBBXXXX XXXA hcphhhhpcpphpcpppppphppphhhhpcphhhhphchch cppc 1- 50.d.......:.........:.........:.........:.........: 51- 100ii.......:.........:.........:.........:........ii hhhhhchppchphhhhchhhphpph hhhhpchphchhhppphpphcp BBBBBBXXXXXXAAAAAAAAAXXXB BBBBXXXXXBBBBXXXXXXXAA ACIMLEPGTRVSHAAVRLAAQVGTL---LVWVGEAGVRVYASGQPGGARS my_fasta_file | +++ +| ++++++ + ++ ++|++| | +|| | ++ --LLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIRCVESGGPEPG-- 1CP2_A AAAXXXXXXXAAAAAAAAXXXXXAAAAXBBXXXXXBBBBXXXXXXX hhhpphhpcphhcphcccpcchchcphhccphpphchhcppphchp 51- 100.........:.........:.....ddd.:.........:.........: 101- 150iiiiiiiiii..i......:.........:.ii......:.........: cchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchc AAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAA DKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVR my_fasta_file + + ++| ++ + +++++ |+ ----------VG-CAGRGIITSINMLEQLGA--YTDDLDYVFYDVLGDVV 1CP2_A XX XAAAAAAAAAAAAAAXXX XXXXXXBBBBBBBXXXX hp hhpcphhpphphhcphph hpcchchhhhchhpchh 101- 150.........:.........:.........:.........:.........: 151- 200.........iiiii.....:........iiiiii.....:.........: hphhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhh AAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAA ATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAIL my_fasta_file + + | ++ ++ + | + |++ + + ++ CGGFAMPIR-----EGKAQEIYIVASGE------MMALYAANNISKGIQK 1CP2_A XXXXXAAAA XXXXXBBBBBBXXX AAAAAAAAAAAAAAAA hpphhhhhc cpchpchhhhhppc hhhhhhhpphpcphpc 151- 200.........:.........:.........:.........:.........: 201- 250.........:........iii......i.:.........:.........: hhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccc AXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAA AAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDRE my_fasta_file | +++ ++++ ++ ++ + + + + |+ +++++ +++ ++ YAKSGGVRLGGIICNSRK---VANEYE-LLDAFAKELGSQLIHFVPRSPM 1CP2_A AXXXXXXBBBBBBBBXXX XXXXAA AAAAAAAAAXXXBBBBBXXXAA hhcppphchpphhhppcc hhpchc hhchhhcchppphhhhhhcphh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.......iii.........:.........: hchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhp AAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXX VRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVS my_fasta_file | +|++ ++ ++ ++ ++ +|+++ + + +|+ + + +++ VTKAEINKQTVIEYDPTCEQAEEYREL---ARKVDANELFVIPKPMTQER 1CP2_A AAAAAAXXXXAAAAXXXXAAAAAAAAA AAAAAAXXXXXXXXXXXAAA hpchchpcpphhchchphcphcchcch hcchchpchhhhhchhppcc 251- 300.........:.........:.........:.........:.........: 301- 309......... hpchphcpp XXXXXXXXX LGDAGHRSS my_fasta_file | + + LEEILMQYG 1CP2_A AAAAAAAAX hcchhhphp 301- 309......... The seq2struc alignment: my_fasta_file ---> 3GWX_B align_len=313 ene=-143.00 identity=7.667731 hpc_err=41.214058 size_err=0.000000 ins=42 del=8 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:ii.......:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++ +|++ + + | | ++ ++ Q--VADLKAFSKHIY-----NAY----LKN--FNMTKKKARSILTGKASH 3GWX_B X XXXXXXXXXAAA AAA AXX XXXXAAAAAAAAXXXXXX p hhchchhpchhh phh hcp hphpccchcphhppchph 1- 50.........:.........:.........:.........:.........: 51- 100.....ii..:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++++++ ++ ++ ++ ++|+ ++|++ TAPFV--IHDIETLWQAEKGLVW-----KQLVN----GLPPYKEISVHVF 3GWX_B XXXBB XXXAAAAAAAAAAXXX XXXXX XXXXXXXAAAAAA phhhh hhchcphhphccphhh cphhp phhhhcchphhhh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file | +++| |+++++++++ | + ++++++| + ++ + + + YRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLAS 3GWX_B AAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAA hchphpphcphcchpchhcphhphpphhhpcphphhchphhchhhhhhhp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: h hh cphp hphppcchchcchccpcphpphhphhpphhhphpc A AA AAXX XXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAA L--LA----KQYG--VTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTE my_fasta_file ++ + + ||+ ++|+++|+ ++ ++ + ++ |+++ IVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDS 3GWX_B ABBXXBBBBXXXXBBBBAAAAAXXXXXXXXXXAAAAAAAAAAXXXXXXAA hhpccphhhhpppphhpcchhcphcchhpchhchchchhhchphhchccp 151- 200.dd..dddd:...dd....:.........:.........:.........: 201- 250.........:.iii.....:.........:.i.......:.........: hhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpc AAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXX AAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGE my_fasta_file + | + + ++|++| ++|+ + + + ++|+ ++ +| + DLALFIAAIIL---CGDRPGLMNVPRVEAIQ-DTILRALEFHLQANHPDA 3GWX_B AAAAAAAAAAX XXXXXXXXXAAAAAAAA AAAAAAAAAAAAXXXXXX chhhhhhhhhh hpcchphhphhchchhp cphhchhchhhphphhch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.iiiiiiiiiiiiii....: hccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhh XXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXX PDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIP my_fasta_file ++++ | + + ++ +++++ + + ++++ +++++ QYLFPKLLQKMADLRQLVTEHAQMMQRIKKT--------------ETETS 3GWX_B XXXXAAAAAAAAAAAAAAAAAAAAAAAAAAA XXXXX phhhhchhpchhchcphhpchhphhpchccp cpcpp 251- 300.........:.........:.........:.........:.........: 301- 313.........:... hhhphpchphcpp XXXXXXXXXXXXX LPVSLGDAGHRSS my_fasta_file | +| ++ ++ LHPLLQEIYKDMY 3GWX_B XXAAAAAAXXXXX hhhhhpchhcchh 301- 313.........:... The seq2struc alignment: my_fasta_file ---> 1M61_A align_len=305 ene=-88.00 identity=2.622951 hpc_err=45.573771 size_err=0.000000 ins=46 del=0 begin1=0 begin2=0 1- 50.ii......:.....ii..:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + ++ +++ + + + + +++ | ++ ++ + + G--SHMPDPAAHLPF--FYGSISRAEAEEHLKLAGMADGLFLLRQCLRSL 1M61_A X XXXXXXXXXXXX BBBXXXAAAAAAAAAXXXXXXXXBBBBBXXXXX p phhhchhhhhhh hhpphpchchcchhchhphhcphhhhcphhcph 1- 50.........:.........:.........:.........:.........: 51- 100.........:.iiiiiiii:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ +++++++ ++ ++ ++|++ | | +++++ + + GGYVLSLVHDV--------RFHHFPIERQLNGTYAIAGGKAHCGPAELCE 1M61_A XXBBBBBBBXX BBBBBBBBBXXXXXBBXXXXXXXXXAAAAAA pphhhphhhch chhhhhhccphppphhhhppchhhphhchhc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ + + ++ | + + + ++++ |+ +++ + + +++ ++++++ FYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEG 1M61_A AAAAXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXXXA hhpcchcphhhphcchhpchpphchphphhchhcchhhcchhcpphchcp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....ii...:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + | + +++ ++ +++ ++ + + + ++++ + ++| + EALEQAIISQAPQVEKLIATTAHE--RMPWYHSSLTREEAERKLYSGAQT 1M61_A AAAAAAAAAAAAAAAAAAXXXXXX XXXXXXXXXXAAAAAAAAAXXXXX chhcphhhpphhphcchhhpphhc chhhhhpphpccchccchhpphpp 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iiiiiiiii.iiiiiiii.......:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file +++ + + ++ + ++ ++ + + +++ ++ DGKFLLRPRKEQGT---------Y--------ALSLIYGKTVYHYLISQD 1M61_A XXXBBBBBXXXXXB B BBBBBBXXBBBBBBBBBX cpchhhchcccppp h hhphhhpcphhhhhhppc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiii.:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++ + +++ +++++ ++++ + + ++ + +++ KAGKYCIPEGTKFDTLWQLVEYL---------------KLKADGLIYCLK 1M61_A XXXXBBXXXXXXXXXAAAAAAAA XXXXXXXXXXXX chpchhhhcppchcphhphhchh chchcphhhhhc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file ++ EACPN 1M61_A XXXXX chhhp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2OQ1_A align_len=305 ene=-82.00 identity=7.540984 hpc_err=40.655738 size_err=0.000000 ins=51 del=0 begin1=0 begin2=0 1- 50.........:.........:.........:......i..:iiiii....: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ |+ + + +++ +++ + || | |+ +++ ++ + DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQ-CLR-----SLGGY 2OQ1_A XXXXXXXXXXXXXXAAAAAAAAAAXXXXXXXBBBBB XXX XXXXB chhhhhhhhhpphpchchcchhchhphhcphhhhcp hhc phpph 1- 50.........:.........:.........:.........:.........: 51- 100.....ii..:.iiiiiiiii.........:...i.....:....i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +|+ + | ++ ++ ++|+ +| +++ +++| VLSLV--HDVR---------FHHFPIERQLNGT-YAIAGGKAHC-GPAEL 2OQ1_A BBBBB BXXB BBBBBBBBXXXXX BBBXXXXXXX XAAAA hhphh hchc hhhhhhccphppp hhhhppchhh phhch 51- 100.........:.........:.........:.........:.........: 101- 150........iiiiiii....:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++++ + + ||+++++|+ + +++++++ + + CEFYSRDP-------DGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDY 2OQ1_A AAAAAAXX XXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA hchhpcch cphhhphcchhpchpphchphphhchhcchhhcch 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiiiiii...i....:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++ + |+ + + + | +|+ | ++|++ VRQTW----------------KLE-GEALEQAIISQAPQVEKLIATTAHE 2OQ1_A AAAAA XXX AAAAAAAAAAAAAAAAAAAAAAXXX hcpph chc pchhcphhhpphhphcchhhpphhc 151- 200.........:.........:.........:.........:.........: 201- 250...iiii..:.........:....iiii.:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + ++ +| ++++++ + ++ + ++ | + +|+ RMP----WYHSSLTREEAERKLYS----GAQTDGKFLLRPRKEQGTYALS 2OQ1_A XXX XXXXXXXAAAAAAAAAX XXXXXXBBBBBBXXXXXBBBBB chh hhhpphpccchccchhp phppcpchhhchcccppphhhp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++++ ++++| +++ + + +| ++++ +++++ + + ++ + +++ LIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLIYCLK 2OQ1_A BBBXXBBBBBBBBBXXXXXBBXXXXXXXXXAAAAAAAAAAXXXXXXXXXX hhhpcphhhhhhppcchpchhhhcppchcphhphhchhchchcphhhhhc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file ++ EACPN 2OQ1_A XXXXX chhhp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2V50_F align_len=1030 ene=420.00 identity=2.135922 hpc_err=14.077669 size_err=0.000000 ins=0 del=725 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph X BB ----------------------------------------M-----TW-- my_fasta_file ++ MSKFFIDRPIFAWVIALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVSYP 2V50_F XAAAAAXXAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBBBBBXX hpchhhcchhhhhhhhhhhhhhpphphhphhhpphhhhhhhhhhhphphh 1- 50dddddddddddddddddddddddddddddddddddddddd.ddddd..dd 51- 100.........:.........:.........:.........:.........: hhhp hhhhc cch phhhh XXXX XXXXX XXX BBBBB -------LPLN--------PIPLK---------DRV---SMIFL------ my_fasta_file ++++ ++ + + ++ + GASAETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDP 2V50_F XXXAAAAXXXXAAAAAAAAXXXXXBBBBBBBBBXXXBBBBBBBBXXXXXA phphcphpcphhphhcpphpphcphchhppcpppcpphphphphcpppch 51- 100ddddddd..:.dddddddd:....ddddddddd...ddd:....dddddd 101- 150.........:.........:.........:.........:.........: p hpphch hcp hhhhhc X XXBBBB XXX BBBBBB ------------------Q------YGQIDV---IDG-AFVLID------ my_fasta_file + ++ + +++ + DIAQVQVQNKLQLATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMT 2V50_F AAAAAAAAAAAAAAXXXXXAAAAAAXXBBBBXXXXXXBBBBBBBXXXXXX chhphphppchphhphhhhpchpcpphchpchhcphhhhhphhppcpphp 101- 150dddddddddddddddddd.dddddd....:.ddd...d.:....dddddd 151- 200.........:.........:.........:.........:.........: cpph cphhhhpph hhhhhc h ppchp XXXX BBBBBXXXX BBBBBB X XXXXX -----------------KTGI-RTHIPVGSV-ACIMLE-P----GTRVS- my_fasta_file | + + ||+ + + + | + KEDLSNYIVSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTP 2V50_F AAAAAAAAAAAXAAAAAXXXXBBBBBBXXXXBBBBBBBXXAAAAXXXXXA ccchpphhhpphpchhpcpcphpchphhppphphchhhchhchpphphph 151- 200ddddddddddddddddd..:.d.......:.d......d:dddd.....d 201- 250.........:.........:.........:.........:.........: hhhhchhhp AAAAAAAAA -HAAVRLAAQ---------------------------------------- my_fasta_file + +++ +|| GDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKTRLQTAEQFENIL 2V50_F AAAAAAAAAAXXXXXXXBBXXXXXXXXXXXXBBXXXXXXXXXXXXXXXXX pchpphhphpphphpppphpphhhhcppphphphhpcpchpphcphcphh 201- 250d........:dddddddddddddddddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: hpp hhhhh XXX BBBBB --------------------------------VGT---LLVWV------- my_fasta_file + + + LKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANAL 2V50_F XBBXXXXXBBXXXXXXXXXBBBXXXXXBBBBXXXXBBBBBBBBXXXXXAA hchphcppphchcchhchphpppchphphphppphhpphhhchhpphphh 251- 300dddddddddddddddddddddddddddddddd...ddd.:...ddddddd 301- 350.........:.........:.........:.........:.........: pchph chhh XXXXX BBBB ---------------GEAGV----RVYA---------------------- my_fasta_file ++ + + |+ DTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLGEAILL 2V50_F AAAAAAAAXXXXXXXXXXXXBBBBBBBBXAAAAAAAAAAAAAAAAAAAAA cphchhcpphhphchhhhpphchhhhhcpphhhphphhchhcphpchhhh 301- 350ddddddddddddddd....:dddd....dddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file VFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVL 2V50_F AAAAAAAAAXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAAA hhhhhhhhhpphchphhhphhhhhhhhpphphhhhhphphpphphhphhh 351- 400dddddddddddddddddddddddddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: p pphp phcpcchhhphc X XXXX XXAAAAAAAAAA ---S------------------GQPG------------GARSDKLLYQAK my_fasta_file + ++++ + AIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLS 2V50_F AXXXAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAXXAAAAAAAAAA hhphhhcchhhhhcphcchhhccphphcchhccphpphpphhhphhhhhp 401- 450ddd.dddddddddddddddddd....dddddddddddd.:.........: 451- 500.........:.........:.........:.........:.........: hh hc cchchchh cchhchch AA XX AAAAAAAA AAAAAAAA LA------LD-------------------EDLRLKVV-RKMFELRF---- my_fasta_file + + + + + AVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPI 2V50_F AAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAXAAAAAAAAXXXX hhhhhhhhhppppphhhcphphphhphhhhphhhhhhhphhhhhphhchh 451- 500..dddddd.:ddddddddddddddddddd:.......d.:......dddd 501- 550.........:.........:.........:.........:.........: pch hhhccphcph cphcppchchphh XXX AAAAAAAAAA AAAAAAAAAAAAA --------GEP---------------APARRSVEQL-RGIEGSRVRATYA my_fasta_file + ++ ++++++ |+ ++++ + + | EKGDHGEHKGGFFGWFNRMFLSTTHGYERGVASILKHRAPYLLIYVVIVA 2V50_F XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAXAAAAAAAAAAAAA ccpchpchcpphhphhpchhhppphphccphhphhchchhhhhhhhhhhh 501- 550dddddddd.:.ddddddddddddddd...:......d..:.........: 551- 600.........:.........:.........:.........:.........: hhhcp hphphppcchchc chccpc phpphhphhpph AAAAA XXXXXXXXXXXXX XXXXXX AAAAAAAAAAAA LLAKQ--YGVTWNGRRYDPK-------DWEKGD----TINQCISAATSC- my_fasta_file + ++ ++ | +++ +|+ + +++++++++ GMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLE 2V50_F AAAAAXXXXXXXXXXXXXXXBBBBBBBXXXXXXAAAAAAAAAAAAAAAAX phhhhhpchhphhhhcccpphhhhphpphhppphccpphhhcphcchhhc 551- 600.....dd..:.........:ddddddd..:...dddd..:.........d 601- 650.........:.........:.........:.........:.........: hhphpch AAAAAAA -------------------------------------------LYGVTEA my_fasta_file + + KESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVFELAKR 2V50_F XXXXXBBBBBBBBXXXXXXXXXXBBBBBBBBXXXXXXXXXXXXAAAAAAA ccppphpphhphpphphhpcppppphhhhhhchhccchppcpphhchhcc 601- 650ddddddddddddddddddddddddddddddddddddddddddd......: 651- 700.........:.........:.........:.........:.........: hhhh hphhhh hphhh ppchhp h AAAA XXXXXX BBBBB XXXXXX A AILA-------------------AGYAPA--IGFVH-TGKPLS------F my_fasta_file |+ |+|++ + ++ +|++ + AQMHFFSFKDAMVFAFAPPSVLELGNATGFDLFLQDQAGVGHEVLLQARN 2V50_F AAAAXXXXXXXXXBBBXXXXXXXXXXXXXBBBBBBBXXXXXXXAAAAAAA hphhhhphcchhhhhhhhhphhchpphpphchhhpcphphphchhhphcp 651- 700....ddddddddddddddddddd......dd.....d..:...dddddd: 701- 750.........:.........:.........:.........:.........: hhchhchh c hcphh hchhc AAAAAAAA X AAAAA AAAAA VYDIADII----------------------K-FDTVV--------PKAFE my_fasta_file + + + + + ++ + + KFLMLAAQNPALQRVRPNGMSDEPQYKLEIDDEKASALGVSLADINSTVS 2V50_F AAAAAAAAXXXBBXXXXXXXXXXBBXXXXXXAAAAAAXXXXXXXXAAAAA chhhhhhpphhhpchchpphpcchphchchcccchphhphphhchppphp 701- 750........dddddddddddddddddddddd.d.....dddddddd....: 751- 800.........:.........:.........:.........:.........: hhc AAA IAR----------------------------------------------- my_fasta_file ||+ IAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPF 2V50_F AAAXXXBBBBBXXXXXXBBBBBBBXXXXXXXXXXXXXXXBBXXXXXBBXX hhhppphhpchhccpchcchhhppchchchphcchpchhhcpccpchhhh 751- 800...ddddddddddddddddddddddddddddddddddddddddddddddd 801- 850.........:.........:.........:.........:.........: cp hpchc c XX XXXXX A -------------------RN---------PGEPD---------R----- my_fasta_file + + NAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQL 2V50_F XXXXXXXXBBXXXBBBBBXXXBBBBBBBBBXXXXXAAAAAAAAAAXXXXX phhhppchchpphchcchpphhhhchhpchhhphpppchhhhhcchhcph 801- 850ddddddddddddddddddd:.ddddddddd.....ddddddddd.ddddd 851- 900.........:.........:.........:.........:.........: chchhhcch hcppcphhchhhhhcchhhhpch AAAAAAAAA AAAAAAAAAAAAAAAAAAAXXXX ----------EVRLACRDI--FRSSKTLAKLIPLIEDVLAAGEI------ my_fasta_file +++++++ + +++++|++| ++ PKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPFSV 2V50_F XXXBBBBBXXAAAAAAAAAXXAAAAAAAAAAAAAAAAAAAXXXXAAAAAA hcphphphpphphccchpppphhhhhhhphhhhhhhhhhhhcphphhhph 851- 900dddddddddd.........dd........:.........:....dddddd 901- 950.........:.........:.........:.........:.........: ph hhhhcc XX XXXXXX -QP--------------PAPPED--------------------------- my_fasta_file + ++ + | MLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE 2V50_F AXXAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAA hhhhhhphhphhhhpphcphppchhhphphhpphphphcphhhhhchhcc 901- 950d..dddddddddddddd..:...ddddddddddddddddddddddddddd 951-1000.........:.........:.........:.........:.........: hphhh h hh hhphpc XXXXX X XX XXXXXX --AQPVA-------------I-----------PL----PVSLGD------ my_fasta_file +|+++ + + + ++ LHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHA 2V50_F AAXXXXXAAAAAAAAAAAAAXAAAAAAAAAAAXXAAAAXXXXXXAAAAAA hhcppcphhchhhchhchchchhhhpphhhhhphhhhhhppphppppphh 951-1000dd.....ddddddddddddd.ddddddddddd..dddd.:....dddddd 1001-1030.........:.........:.........: hphc pp XXXX XX -----------AGHR-------------SS my_fasta_file | + + IGTGVIGGMVTATVLAIFWVPLFYVAVSTL 2V50_F AAAAAAAAAAAXXXXAAAAAAAAAAAAAXX hppphhpphhphphhhhhhhhhhhhhhpph 1001-1030ddddddddddd....ddddddddddddd.: The seq2struc alignment: my_fasta_file ---> 1JE6_A align_len=307 ene=-38.00 identity=4.885994 hpc_err=42.345276 size_err=0.000000 ins=32 del=2 begin1=0 begin2=0 1- 50iiiiii...:.........:...i.....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ ++ +++| +|+| ++++ + ++ + +++ ++ ++ ------MEPHSLRYNLMVLSQDG-SVQSGFLAEGHLDGQPFLRYDRQKRR 1JE6_A XXXBBBBBBBBBBBXXX XXXXXXBBBBBBXXBBBBBBBXXXXB hchhphchphhhhppcp phppphhhcphhcpphhhchccpccc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.....ii..:.........:.........: hhhhc hppchphhhhchhhphpphhhhhpchphchhhppphpphcpcc BBBBB XXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAA CIMLE--PGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDK my_fasta_file + + + ++ +++ ++| +++ + + + + |+++ + AKPQGQWAEDVLGAETWDTETEDLT--ENGQDLRRTLTHIKDQKGGLHSL 1JE6_A BBBXXAAAAAAXXAAAAAAAAAAAA AAAAAAAAAAAAAXXXXXXXBBB hchppphhcchhphcphcpcpcchp cpppchccphphhccpcpphhph 51- 100.....dd..:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchchp AAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAA LLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRAT my_fasta_file ++ ++ + + ++++ + +++++ + + + + ++|+ QEIRVCEIHEDSSTRGSRHFYYNGELFLSQNLETQESTVPQSSRAQTLAM 1JE6_A BBBBBBBBXXXXXBBBBBBBBBXXBBBBBBBXXXXBBBXXXXAAAAAAAA pchchhchhccpppcppchhhhppchhhppphcppcpphhpppchpphhh 101- 150.........:.........:.........:.........:.........: 151- 200.......iiiiiiiii...:......ii.:.........:.........: hhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhh AAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAX YALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAA my_fasta_file + ++ + +| + + ++ + +++ + +|+ + ++ + NVTNFWK---------EDAMKTKTHY--RAMQADCLQKLQRYLKSGVAIR 1JE6_A AAAAAAA XXXXXXXXXX AAAAAAAAAAAAAAAAXXXXXX phpphhc cchhcpcphh chhphchhpchpchhcpphhhc 151- 200.........:.........:.........:.........:.........: 201- 250.........:......iiiiiiiii.iii:.........:.........: phhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchc XXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAA GYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVR my_fasta_file + | ++|++ + + +++ + ++| + | RTVPPMVNVTCSEVSE---------G---NITVTCRASSFYPRNITLTWR 1JE6_A XXXXXBBBBBBBXXXX X BBBBBBBBBBBXXXXXBBBBB cphhhhhphphpchpc p phphphchpphhhcphphphc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphp AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXX LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLG my_fasta_file ++++ ++ + |++ + ++++ + +++| + + + + ++ QDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNH 1JE6_A BXXBBXXXXXXBBXXXXXXXXXXBBBBBBBBBBXXXXXXBBBBBBBXXBB pcphphphpppphpchhhcpppphpphhhpchcppccpchphhhchppph 251- 300.........:.........:.........:.........:.........: 301- 307....... chphcpp XXXXXXX DAGHRSS my_fasta_file ++ ++| GTHPVPS 1JE6_A BBBBXXX pphhhhp 301- 307....... The seq2struc alignment: my_fasta_file ---> 1DKG_D align_len=385 ene=-133.00 identity=5.194805 hpc_err=39.220780 size_err=0.000000 ins=4 del=80 begin1=0 begin2=0 1- 50.ii......:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphc hhcp hh hhhc cpphcph XBBXXXXXXXXXXXXBBBBBXXXBBB BXXX BB BBBB XXXXBBB MTWLPLNPIPLKDRVSMIFLQYGQID----VIDG-AF-VLID-KTGIRTH my_fasta_file + +++ ++ + | + + +++ ++| + + |+ + K--IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLV 1DKG_D X XXBBBXXXXBBBBBBBBXXBBBBXXXXXXXXBBBXBBBBXXXXXBBB c hhphchppppphhhhhcppphchhcphcpccpphphhhhppcpcphh 1- 50.........:.........:......dddd....d..d.:..d......: 51- 100.........:.........:.........:.........:.........: hhhpphhhh hhchppchphhhhchhhphpphhhhhpchph BBXXXXBBB BBBXXXXXXAAAAAAAAAXXXBBBBBXXXXX --------IPVGSVACI--MLEPGTRVSHAAVRLAAQVGTLLVWVGEAGV my_fasta_file +++ ++ +++ | | +++| ++ ++ + + +|+ GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGD 1DKG_D XAAAAXXXXXXXXXBBBXXXXXXXXXXXXAAAAAAXXXXXXBBBBXXXXX pphhccphhpphppphhhhcchhpcchpccchpcchphhhhchhhhcppc 51- 100dddddddd.:.......dd:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: chhhppphpphcpcchhhphchhhccchchchhcch hchchpchhhh BBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAA AAAAAXXXAAA RVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKM---FELRFGEPAPA my_fasta_file + ++ + +|++ ++ ++ |+ + ++ ++++++ + ++++ + AWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQ 1DKG_D BBBBBXXBBBXAAAAAAAAAAAAAAAAAAAAXXXXXBBBBXXXXXXXAAA hhhchcppchhhhphphchhcchccphcchhpchhpchhhphhhhhpchp 101- 150.........:.........:.........:......ddd:.........: 151- 200.........:.........:.........:.........:.........: ccphcphcph c ppchchphhhhhcphphphp pcch AAAAAAAAAA A AAAAAAAAAAAAAAXXXXXX XXXX RRSVEQLRGI--E--GSRVRATYALLAKQYGVTWN---------GRRY-- my_fasta_file | ++ | + + +++| +++++ + + + RQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTF 1DKG_D AAAAAAAAAAXXXBBXXXXXAAAAAAAAAXXXXXXBBBBBBBBBXXXXBB cphpcchpchhphchcchhpchphhhhhhphccppppcphhhhchpppph 151- 200.........:dd.dd....:.........:.....ddddddddd....dd 201- 250.........:.........:.........:.........:.........: chcc hccp cphpphh XXXX XXXX XAAAAAA -------DPKD--------WEKG-------------DTINQCI------- my_fasta_file |++| | + ++++ DISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGI 1DKG_D BBBBBBBXXXXBBBBBBBBXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXX chphhchcchcpccphchhhpppcphhppcchcpchhphhhcchcccpph 201- 250ddddddd..:.dddddddd:...ddddddddddddd...:...ddddddd 251- 300.........:.........:.........:.........:.........: phhpphhhphpchhhhhhphhh hhphhhpp chhphhhchh AAAAAAAAAAAAAAAAAXXXXX XBBBBBXX XXXXAAAAAA SAATSCLYGVTEAAILAAGYAP------AIGFVHTG----KPLSFVYDIA my_fasta_file + | ++ +++ ++++ + ++++ ++ + +++ DLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 1DKG_D AAAAAAAAAAAAAAAAAXXXXXBBBBBBBBBBBBXXBBBBBBBBBBAAAA chcpchhhhpchcchhcchchchpphpppchphhhhphchpphchhphch 251- 300.........:.........:..dddddd.:......dddd.........: 301- 350.........:.........:....i....:.........:.........: chhchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhcc AAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAA DIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIED my_fasta_file + | |+ +++ + + + +++ ++ + +++ + +++ ++ TRAKLESLVEDLVNRSIELLKVAL-QDAGLSVSDIDDVILVGGQTRMPMV 1DKG_D AAAXAAAAAAAAAAAAAAAAXXXX XXXXXXBBBBBXXXXXXAAAAAAAA pchchcphhcchhpcphchhchhh pchphphpchcchhhhppppchhhh 301- 350.........:.........:.........:.........:.........: 351- 385...i.....:.........:.........:..... hhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++ ++++ +++| +++ ++ +++|+++ QKK-VAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 1DKG_D AAA XXXXXXXXXXXXAAAAAAAAAXXXXXXXXXX pcc hhchhpcchccchphcchhhhphhhppphhp 351- 385.........:.........:.........:..... The seq2struc alignment: my_fasta_file ---> 1J4N_A align_len=305 ene=-124.00 identity=3.934426 hpc_err=42.622951 size_err=0.000000 ins=56 del=0 begin1=0 begin2=0 1- 50iiiiiiiiiii....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ + ++ +++ + + |+ -----------MASE-----FKK----KLF------WRAV-----VAEF- 1J4N_A XXXX XAA AAA AAAA AAAA hhpc hcc chh hchh hhch 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...i.....:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ + ++++|++++ + + + + +++ ++ ++ -----LAMILFIFISIGSALGFH-YPIKSNQTTGAVQDNVKVSLAFGLSI 1J4N_A AAAAAAAAAAAAAAAXXX XXXXXXXXXXXXXXAAAAAAAAAAAA hhhhhhhhhphpphhphh hhhcpppppphhpcphchphhhphph 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++ +++ + +++ ++++ + + +++ ++ ++ ++ + ++| ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATA 1J4N_A AAAAAAAAAAAXXXXXAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAAA hphhpphphhpphhhphhhphphhhphphphhchhhhhhhphhphhhhph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....i....:.........:.......i.: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |+ ++ ++ ++++++ + + + |+ +++++ ++ + + ILSGITSSLPDNSLGLNALAPGVN-SGQGLGIEIIGTLQLVLCVLAT-TD 1J4N_A AAAAAXXXXXXXXXXXXXXXXXXX XXXXXAAAAAAAAAAAAAAAAA XX hhpphppphhcpphphphhhhphp pppphphchhpphphhhhhhhp pc 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:....ii...:...i.....:.......ii:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file +++ +++| ++ |++ +++ + + ++ ++ +++ + RRR-----RDLGGS--GPLAIGF-SVALGHLLAIDYT--GCGINPARSFG 1J4N_A XXX XXXXXX AAAAAAA AAAAAAAAAAAAA XXXXXAAAAAA ccc cchppp phhhhph phhhphhhhhchp phphphhcphp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiii:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + +|++ + + + +++ | | ++++ | ++++++ SSVITHNFQDHWIFWVGPFIGAA------LAVLIYDFILAPRSSDLTDRV 1J4N_A AAAAXXXXXXXXAAAAAAAAAAA AAAAAAAXXXXXXXXXAAAAA pphhphphpchhhhhhphhhphh hhhhhhchhhhhcppchpcch 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + | KVWTS 1J4N_A XXXXX chhpp 301- 305..... The seq2struc alignment: my_fasta_file ---> 1L7C_A align_len=307 ene=-104.00 identity=6.840391 hpc_err=36.482084 size_err=0.000000 ins=63 del=2 begin1=0 begin2=0 1- 50iii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ | | + + ++ +++ +| + ---DHVSDSFLETNV-----PLL----VLI------EAAK-----NGNE- 1L7C_A XXXXAAAAAXXA AAA AAA AAAA XXXA chhpcphhcpph hhh hhh chhc pppc 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++ + |+ | +++ +| ++ + ++| -----KEVKEYAQVFREHANKLI-----EVANL----ACSISNNEEGVKL 1L7C_A AAAAAAAAAAAAAAAAAA AAAAA AAAAXXXAAAAAA cchcchhphhcchhpchh chhph hhphpppccphch 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++|+|+ | + +|+ ++++ + ++ |+ + + ++++ + VRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLT 1L7C_A AAAAAAAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAAAAAA hchphpphchhhhphhphhhhhhhchppchhpcphchhccphccphchhp 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiiiiii........:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + ++ + +++ + |+ | | DAVDD----------------ITSIDDFLAVSENHILEDVNKCVIAL--- 1L7C_A AAAAA AAXAAAAAAAAAAAAAAAAAAAAAAA chhcc hpphcchhhhpcphhhcchpchhhhh 151- 200.........:.........:.........:.........:.........: 201- 250i..iiiii.:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ +++++++++|+++ + | + + + +++ + |++|+ -QE-----KDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLE 1L7C_A AX XXAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAA pc cchcphccphphhcpchhchhhhhppchcphchphhpcchhc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcp pcphhchhhhhcchhhhpchp hhhhhcchphhhhhhhhphp AAAAAAA AAAAAAAAAAAAAAAAXXXXX XXXXXXXXXXXXXXXXXXXX CRDIFRS-SKTLAKLIPLIEDVLAAGEIQ-PPAPPEDAQPVAIPLPVSLG my_fasta_file ++++ ++ + +++ + + | +++|+ ++ ++++ ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRD 1L7C_A AAAAAAAXAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAA hpchhppphhhchpcphchhhchhppchhphhccpchhchpchhhcphcc 251- 300.......d.:.........:.........d.........:.........: 301- 307....... chphcpp XXXXXXX DAGHRSS my_fasta_file ++ +++ IRKAVLM 1L7C_A AXXAAAX hcchhhh 301- 307....... The seq2struc alignment: my_fasta_file ---> 1Z87_A align_len=310 ene=-50.00 identity=7.741936 hpc_err=42.258066 size_err=0.000000 ins=47 del=5 begin1=0 begin2=0 1- 50iii......:.........:.........:.........:.........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ + |+ + + +++ ++ +++|| ++ ++++ + + + ---ASGRRAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPADG- 1Z87_A XXXXXXXBBBBBBBBXXXXXXXXXXXBBBBBBBBXXXBBBBBXXXX hppcchhcpphhchchphppphppcchpchhhphhcchhphphhcp 1- 50.........:.........:.........:.........:.........: 51- 100ii.......:.........:.........:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + | + ++ +++ + ++ + +++ ++|++ + ++ | --EPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADA------ 1Z87_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBXXXXXXX chphchchhphpphhchphhhhphhchhhhpccchphcchch 51- 100.........:.........:.........:.........:.........: 101- 150iiiiii..iiiiiiiiiiiiiiii...iii.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + + + + + +++++ +++ ------GG----------------LGI---SIKGGRENKMPILISKIFKG 1Z87_A XX XXX BBBBBXXXXBBBBBBBXXXX pp hph phcppccpchhhhhpchhcp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiiiiiiii.....:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file | | |+ + +| + +++ +| + | + ++++| +++|+ LAADQTEALFVGDAILSVNGEDLS----------SATHDEAVQALKKTGK 1Z87_A XAAAAXXXXXXXXBBBBBXXXXXX XXXAAAAAAAAAAXXX hhhcppchhhhpchhhphppcchp phphcchhphhccppc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + + ++ + +| ++ +++|+|++ +| ++ +++ ++ |+ EVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLS 1Z87_A XXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX chhhchchhcchphhhcpphpppphphcphhhphhpcphpphphphcphp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hc chh cppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhh AA AAA AAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXX CR----DIF-RSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPV my_fasta_file ++ ++ ++| ++++|+ + + +++ ++| + | ++|+ ++ EAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSW 1Z87_A XXBBBBXXXBBBBBBXXXXXXXXXBBBBBBXXXXBBBBBBXXXAAAAAAA chchhphchhhhpcchphpchchchhchhhhcppchhhhchccchphcph 251- 300..dddd...d.........:.........:.........:.........: 301- 310.........: phpchphcpp XXXXXXXXXX SLGDAGHRSS my_fasta_file ++++++++ AGAIQAQIGT 1Z87_A AAAAAAAAXX hphhphphpp 301- 310.........: The seq2struc alignment: my_fasta_file ---> 1R84_A align_len=305 ene=-83.00 identity=6.557377 hpc_err=36.393443 size_err=0.000000 ins=73 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...ii....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + ++|++++ + | +| ++| +++ ++ ++ +++ Q--AQITGRPEWIWL-----ALG--TALMGLGTLYFLVKGMGVSDPDAKK 1R84_A X XXXXXXXXAAAA AAA AAAAAAAAAAAAXXXXXXXXAAAAA p hphppchchhhh hhp phhhphpphhhhhcphphpchchcc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:........i:.......iiii...iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++++ + + +|+ + |++|+ | + |+ ++ ++ FYAITTLVPAIAFTMYLSMLLGYGLTMV-PFGGEQNP----IYW------ 1R84_A AAAAAAAAAAAAAAAAAAAAXXXXXBBB BBXXBBBB BXX hhhhpphhhhhhhphhhphhhphphphh hhppcpph hhh 51- 100.........:.........:.........:.........:.........: 101- 150i.....ii.:.........:.......iiiii.......:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++ + ++ ++ +++ +|+ ++ + +|++ + + ++ -ARYAD--WLFTTPLLLLDLALLVDAD-----QGTILALVGADGIMIGTG 1R84_A AAAAA AAAAAAAAAAAAAAAAXXX AAAAAAAAAAAAAAAAAA hchhc hhhpphhhhhchhhhhchc ppphhhhhphcphhhppp 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiiiii.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file | +++ |++ + +| + ++ +++ LVGAL---------------TKVYSYRFVWWAISTAAMLYILYVLFFGFT 1R84_A AAAAA XXXAAAAAAAAAAAAAAAAAAAAAAAAXAA hhphh pchhphchhhhhhpphhhhhhhhhhhhphp 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:.........:.........:.........:....ii...: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++| ++ + ++ + +| | + ++++ |++ ++ SKA-----ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGA--GIVP 1R84_A AAA XXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXX XXXX pch cphchchhpphchhcphphhhhphhhhhhhhppcph phhh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiiiiii...: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++++++++|+++ + ++ | + LNIETLLFMVLDVSAKVGFGLIL-----------------------LRSR 1R84_A AAAAAAAAAAAAAAXXAAAAAAA XXXX hphcphhhhhhchphchphphhh hcpc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + + AIFGE 1R84_A XXXXX hhhpc 301- 305..... The seq2struc alignment: my_fasta_file ---> 1Q3B_A align_len=320 ene=-100.00 identity=4.062500 hpc_err=38.124999 size_err=0.000000 ins=58 del=15 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhhccchphhh hphpphc hhcphhhhhcc XBB XXXXXXXXXXXXBBBB BXXXBBB BXXXBBBBBBX MTW--------LPLNPIPLKDRVSMIF-LQYGQID----VIDGAFVLIDK my_fasta_file + + ++ |++|+++ | +++ ++ + + + + PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETR 1Q3B_A XXXAAAAAAAAAAAAAAXXXXXXBBBBXXXXXXXXAAAAXXXXBBBBBBB hcphchcchhcphchhhcpchhpchhhhhhphcphppphhpphhphhcpc 1- 50...dddddddd........:.......d.:.....dddd:.........: 51- 100.........:.........:.........:.........:.........: pphcphhhhpphhhhhhchppc hphhhhchhhphpphhhhhpchphch XXXBBBBBXXXXBBBBBBXXXX XXAAAAAAAAAXXXBBBBBXXXXXBB TGIRTHIPVGSVACIMLEPGTR--VSHAAVRLAAQVGTLLVWVGEAGVRV my_fasta_file +++ + + + +++ ++ +++ + + + +|+|+ | + GKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTI 1Q3B_A XXBBBBBBXXXXBBBBBXXXXXBBBBBBXXXXXXXXXXBBBBBBXXXBBB pchhhphhppchphhphpphhphhchhcppcchpppchhchchpphccph 51- 100.........:.........:..dd.....:.........:.........: 101- 150.........iiiiiiiiiiii..iiiiiiiiiii.....:..iii....: hhppphpphcpcchhhphchhhccchchchhcchhchchpchhhhccphc BBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAA YASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVE my_fasta_file + ++ ++ + +++ ++++ LLYSASDIE------------ML-----------RPEQLTTH---PFLQR 1Q3B_A BBBXXXBBB BB XAAAAXXX AAAAA hhhphpchc hh chcphpph hhhpc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........iiiiiiiii.: phcphcppchchphhhhhcphphphppcchchcchccpcphpphhphhpp AAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAA QLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATS my_fasta_file +++ + + ++++++++++| + +++ +++ + VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFL---------AG 1Q3B_A XXXXXXXXXXXAAAAAAAAAXXXXXXXXAAAAXXXXXXX XX hphchhchphphchhccchhphchcpcphhphhhcphhh hp 151- 200.........:.........:.........:.........:.........: 201- 250.........:........iiiii......:........i:.........: hhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhch AAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAA CLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEI my_fasta_file +++ ++ + | +++ + +++++ ++ ++ + ++| LGNYLRVEILWQVGLTGN-----HKAKDLNAAQLDALA-HALLEIPRFSY 1Q3B_A XXAAAAAAAAAAXXXXXX XXXXXXXAAAAAAAA AAAAAAAAAAA hpphhchchhhphphppp hchcchphhphchhh hhhhchhchph 201- 250.........:.........:.........:.........:.........: 251- 300.........iiiiiiiiiiiiiiiii...:.........:.........: hccphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcc AAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXX ARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPED my_fasta_file | | ++ + ++ + | ++ + | ++ ATRGQVDEN-----------------KHHGALFRFKVFHRDGEPCERCGS 1Q3B_A AAXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX hpcpphccp chhphhhchchhhccpchhcchpp 251- 300.........:.........:.........:.........:.........: 301- 320.........:.........: hphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXX AQPVAIPLPVSLGDAGHRSS my_fasta_file +++++ ++ + ++ +++ + IIEKTTLSSAPFYWCPGCQH 1Q3B_A XXBBXXXXXBBXXXXXXXXX hhccpphpphhhhhhhphph 301- 320.........:.........: The seq2struc alignment: my_fasta_file ---> 1Z6T_C align_len=586 ene=13.00 identity=4.436860 hpc_err=23.378840 size_err=0.000000 ins=0 del=281 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphh hhph XBBX XXXX --------------------------------MTWL--------PLNP-- my_fasta_file ++ + ++++ MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQ 1Z6T_C XXAAAAAAAAAAAAAAAAAXXXAAAAAAAAAAXXXXAAAAAAAAXXXXAA hchchcphhhphcchhccchcpphhhchhhpcphhphpcccchcpchppp 1- 50dddddddddddddddddddddddddddddddd....dddddddd....dd 51- 100.........:.........:.........:.........:.........: hhhc cch phhhhphpphc XXXX XXX BBBBBXXXBBB ----------IPLK-------------DRV-------SMIFLQYGQID-- my_fasta_file ++ +++ + + QRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGK 1Z6T_C AAAAAAAAAAXXXXAAAAAAAAAAAAAXXXAAAAAAAXXXXXXXXXXXAA pchhhhhchhhcccpcphhphhphhhhcphcchhhhhhcphhhhpppppc 51- 100dddddddddd....ddddddddddddd..:ddddddd..:........dd 101- 150.........:.........:.........:.........:.........: hhc phhhhhccpphcp hhhhpphhhh BXX XBBBBBBXXXXBB BBBXXXXBBB ----VID---------GAFVLIDKTGIRT-----------HIPVGSVACI my_fasta_file +| |+ ++++++ ++ +| + DSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWV 1Z6T_C AAAAXXXAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAXXXXXXXBBB cphpphpphhcphhhcpphhpchhhhhpccchhphhppchpchcpchphh 101- 150dddd...ddddddddd...:.........ddddddddddd.........: 151- 200.........:.........:.........:.........:.........: hhchppchp hh hhchhhp hpp hhhhhpch BBBXXXXXX AA AAAAAAA XXX BBBBBXXX MLEPGTRVS-------HA--AVRLAAQ-VGT--LLVWVGEA--------- my_fasta_file + ++++ ++|+++ | + + + TIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 1Z6T_C BBBXXXXXXAAAAAAAAAXXAAAAAAAXXXXBBBBBBBXXXAAAAAAAAA phhphhphpcphhhhchhcchphhcphhhpphhhhphpcpccpphhhchp 151- 200.........ddddddd..dd.......d.:.dd......:.ddddddddd 201- 250.........:.........:.........:.........:.........: phchhhppphpph cpcchhhphchh hc cc XXBBBBXXXXXXX AAAAAAAAAAAA XX AA ------GVRVYASGQPGGA--RSDKLLYQAKLA------------LD-ED my_fasta_file + ++ | +++ + +|++ +|+ | ++ NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV 1Z6T_C AAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXBBBBBBBXXAAA phhpchcpccphppchhhphcchccchchhhhcchhcphhhhcchhcphh 201- 250dddddd...:.........dd........:...dddddddddddd..d.: 251- 300.........:.........:.........:.........:.........: hc hchhcchhchch AA AAAAAAAAAAAA LR-----------------------------------LKVVRKMFELRF- my_fasta_file | + +++ |+ LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 1Z6T_C AAXXXXXXBBBBBBXXXXXXXXXXXXBBBBBXXXXXXAAAAAAAAAAAAX hchhcpphphhhppcccphpcphhphchhhhhcpphpcccphchhphhhp 251- 300..ddddddddddddddddddddddddddddddddddd..:.........d 301- 350.........:.........:.........:.........:.........: pch hhhccp hcphcphcppchc hphhhhhcphphp XXX AAAAAA AAAAAAAAAAAAA AAAAAAAAAXXXX -----GEP---APARRS---VEQLRGIEGSRVR----ATYALLAKQYGVT my_fasta_file +++ + + ++ +| ++++ | |+++|+ ++ MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQF 1Z6T_C XXXXXXXXAAAAAAAAAXXXAAAAAAAAAAAAAXXXXAAAAAAAAAXXXX hcchchhcphhphhcchcpphhhhphhphhhcchhpchchhhcphppcph 301- 350ddddd...ddd......ddd.........:...dddd..:.........: 351- 400.........:.........:.........:.........:.........: hppcchchcch ccp cphpp hhph XXXXXXXXXXX XXX XAAAA AAAA WNGRRYDPKDW------------EKG----DTINQ-----------CISA my_fasta_file + +| + ++| ++ |+ +++ KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 1Z6T_C XXXXXXXXXXXAAAAAAAAAAAAXXXAAAAAAAAAXXXXXXXXXBBAAAA cchccppphchchhcchhphphchhccchcchhpchphhpcchchhpchh 351- 400.........:.dddddddddddd...dddd.....ddddddddddd...: 401- 450.........:.........:.........:.........:.........: hpph hhphpchhhhhhphhhhhphhhpp chhphhhchhchh AAAA AAAAAAAAAAAXXXXXXBBBBBXX XXXXAAAAAAAAA ATSC---LYGVTEAAILAAGYAPAIGFVHTG----KPLSFVYDIADII-- my_fasta_file ++ ++ | ++ ++ ++++ + + | ++ CILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 1Z6T_C AAAAXXXAAAAAAAAAAAAAXXXXBBBBBXXBBBBBXXAAAAAAAAAAXX hhhhchcpcchcchhpchhpcphhhhccppcphchhhhchphchhpccph 401- 450....ddd..:.........:.........:.dddd....:........dd 451- 500.........:.........:.........:.........:.........: chcphhhchhchh ccphpchc cchchhhcch hcpp XAAAAAAAAAAAA AXXXXXXX AAAAAAAAAA AAAA -KFDTVVPKAFEIA-------RRNPGEPD----REVRLACRDI---FRSS my_fasta_file +| + + | +| + + +++ + SQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKEL 1Z6T_C XXAAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXAAAA pphpchhcchhpphpchhphhphphcpcchhhhhphhhhhhhphchhcch 451- 500d........:....ddddddd........dddd......:...ddd...: 501- 550.........:.........:.........:.........:.........: cphh chhhhhcchhhhp chphh AAAA AAAAAAAAAAAXX XXXXX KTLA--KLIPLIEDVLAAG----------EIQPP---------------- my_fasta_file ++| ++ + +| ++ + + CALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSL 1Z6T_C AAAAXXAAAAAAAAAAAXXAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAA hhhhhphchhchcpchhphhhhhhchhchchhhcccchhhpcphpchhph 501- 550....dd...:.........dddddddddd:....dddddddddddddddd 551- 586.........:.........:.........:...... hhhcchphhhhh hhhphpc hphcpp XXXXXXXXXXXX XXXXXXX XXXXXX APPEDAQPVAIP-----LPVSLGD------AGHRSS my_fasta_file ++ +++ + + | +++ ++++ NGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQ 1Z6T_C XXXXXXXXXXXXAAAAAXXXXXXXAAAAAAAAAAAX pphhhpcphhhphhphphhchcppchhpphchphcp 551- 586.........:..ddddd..:....dddddd...... The seq2struc alignment: my_fasta_file ---> 3C5W_A align_len=305 ene=-73.00 identity=4.262295 hpc_err=35.081968 size_err=0.000000 ins=77 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + | + ++ + + + + S--LYPIAVLIDELR-----NED----VQL------RLNS-----IKKL- 3C5W_A X XXAAAAAAAAAX XXX AAA AAAA AXXA p hhhhhhhhcchc pcc hph chpp hcch 1- 50.........:.........:.........:.........:.........: 51- 100i........:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ + ++ | + ++ | + + +++ + +|++ + -STIALALGVERLSQSLLPAIVE-----LAEDA----KWRVRLAIIEYMP 3C5W_A AAAAAAAXXXAAAAXXAAAAAA AXXXX XAAAAAAAAXXAA pphhhhhphcchppphhhhhhc hhcch chchchhhhchhh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +| + ++|+ +| + + + + + | + ++ +++ + | LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 3C5W_A AAAAAAXXXXXXXXAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAXAAAA hhhpphphchhccchpphhhhhhhchhhhhcchhppphcchhcchpcchh 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiii.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +++ + ++ ++ | +++ + +++++ ++ +++ + HATII-----PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLP 3C5W_A AAXAA AAAAAXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAXAA hhphh hchhhhppchphhhchpphhhhphhpchhppchppchhhh 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:....iiiiiiiii......:.......i.:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + +++++ + ++ ++|+ + ++++ | ++++ TVL-----RMAGDP---------VANVRFNVAKSLQK-IGPILDNSTLQS 3C5W_A AAA AXXXXX XAAAAAAAAAAAAA AXXXXXAAAAAA phh chhpch hhphchphhcphpc hphhhcppphpp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiiiiiii..: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++ + +|++ + + +++ ++ +++ EVKPILEKLTQDQDVDVKYFAQE------------------------ALT 3C5W_A XXAAAAAAAAXXXXAAAAAAAAA AAA chchhhcchppcpchchchhhpc hhp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + ++ VLSLA 3C5W_A AXXXX hhphh 301- 305..... The seq2struc alignment: my_fasta_file ---> 1XNX_B align_len=307 ene=-97.00 identity=3.583062 hpc_err=43.648207 size_err=0.000000 ins=69 del=2 begin1=0 begin2=0 1- 50iiiii....:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + +++++ + +++ ++ + +| -----QKELVQILLG-----AHT----RHV------GPLF-----DQFV- 1XNX_B XXXAAAAAAA AAA AAX XXXX XXXX pcchhphhhp hhp chh phhh cphh 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.iiiiiiiii...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ + + ++ ++ + ++|+ +++++ -----QFKPPA---------YLF-----MHHRP----FQPRGPVLPLLTH 1XNX_B XXXXXX XXX XXXXX XXXXXXXAAAAAA phchhh hhh hhhch hphcphhhhhhph 51- 100.........:.........:.........:.........:.........: 101- 150......i..:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++++ ++++ ++ |+ +|++ ++ ++ +| + +++ |+++ ++ FADINT-FMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTT 1XNX_B AAAAAA AAAAAAAAAAXXXAAAAXXXAAAAAAAAAAAAAAAAAAAAXXX hhchpp hhhpphhchpcchhhhcphphccphphhcphhhchhhhphppp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphp hphppcchchcchccpcphpphhphhpphhhphpchhhhhh AAAAAXX XXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAX LLAKQYG--VTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAA my_fasta_file + +++ +++ + + +++++++ ++++ +++ ++ + FCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEY 1XNX_B XXXXXXXBBBXXBBBXAAAAAAXXXXAAAAAAAAAAAAAAAXXXXXAAAA hhhppcphhhphhhhchcchhhhphphchhcphhhhhcphcphhhpchch 151- 200.......dd:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:......ii.: phhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchc XXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAA GYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVR my_fasta_file + |++ ++ |+++++ + |+ + + ++++| + ++ ++ VLMAATALFSPDRPGVTQREEIDQLQEEMALILNNHIMEQQSRLQS--RF 1XNX_B AAAAAAAAXXXXXXXXXXXXXAAAAXAAAAAAAAAAAAAXXXXXXX XX hhhhhphhhphcchphppccchcphpcchhhhhpphhhcpppchpp ch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.....iiiiiiiiiiiiiiiii.......: hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphp AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXX LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLG my_fasta_file | + ++++ ++++++ ++ ++ ++ ++ LYAKLMGLLADLRSINNAYSYELQR-----------------LEELSAMT 1XNX_B AAAAAAAAAAAAAAAAAAXXAAAAA XXXXXXXX hhhchhphhhchcphpphhphchpc hcchphhp 251- 300.........:.........:.........:.........:.........: 301- 307....... chphcpp XXXXXXX DAGHRSS my_fasta_file + ++ ++ PLLGEIC 1XNX_B XAAAAAA hhhpchh 301- 307....... The seq2struc alignment: my_fasta_file ---> 2H6B_B align_len=308 ene=-92.00 identity=6.168831 hpc_err=33.766234 size_err=0.000000 ins=73 del=3 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hp hhhhphhhhccchphhhhphpphch hcphhhhhccpphcphhhhp XB BXXXXXXXXXXXXBBBBBXXXBBBB XXXBBBBBBXXXXBBBBBXX MT--WLPLNPIPLKDRVSMIFLQYGQIDV-IDGAFVLIDKTGIRTHIPVG my_fasta_file ++ + + + +++++++| + | ++ + | DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVE 2H6B_B XXAAAAXXXXXXXXXXXXXXXXXXBBBBBXXXXBBBXXXXXXXXBBBBBB chhphhhhcphhhhcchcphpphphhcchhcpphhhhhpcchpphhhhhc 1- 50..dd.....:.........:.........d.........:.........: 51- 100.........:....ii...:.........:.........:.......iii phhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpc XXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAA SVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSD my_fasta_file + + + + + + + | + | ++ +++|+ || ++++ + GKIKLDIIFEDGSE--KLLYYAGGNSLIGKLYPTGNNIYATAMEPTR--- 2H6B_B XXBBBBBBXXXXXB BBBBBBXXXXBBXXXXXXXXBBBBBBXXXBB pchchchhhccppc chhhhhpppphhpchhhpppphhhphhchpc 51- 100.........:.........:.........:.........:.........: 101- 150iiiiiiiii:.iii.....:.......i.:iiii.....:.........: chhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchch AAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAA KLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRA my_fasta_file ++ + ++ ++++ |+ + + + + +++ |+ ---------TC---WFSEKSLRTVFRT-DE----DMIFEIFKNYLTKVAY 2H6B_B BB BBXAAAAAAAAAA XX AAAAAAAAAAAAAAAA ph hhpccphcphhcp cc chhhchhcphhpchhh 101- 150.........:.........:.........:.........:.........: 151- 200........iiiiiiiiiiiiiii....iiiiiii.....:.........: phhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhh AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILA my_fasta_file + ++ | + + ++ |++ +| +++ YARQVAEM---------------NTYN-------PTIRILRLFYELCSSQ 2H6B_B AAAAAAAA XXXX AAAAAAAAAAAAAAAA hhcphhch pphp hphchhchhhchhppp 151- 200.........:.........:.........:.........:.........: 201- 250......i..:.........:.........:.........:.......iii hphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccch XXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAA AGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREV my_fasta_file + + ++ + |++ + ++ + + + +||+++ + +| | + + GKRVGD-TYEITMPLSQKSIGEITGVHHVTVSRVLACLKRENILDKK--- 2H6B_B XBBBXX BBBBXXXXXAAAAAAAAXXXAAAAAAAAAAAAAXXXBBBX pcchpc phchphhhppcphpchpphhhhphpchhhhhcccphhccc 201- 250.........:.........:.........:.........:.........: 251- 300iiiiiiiiiiiiiiiiiiiiiiiii....:.........:.........: chhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhph AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX RLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSL my_fasta_file ++ +|+ + +++ ++++++ + -------------------------KNKIIVYNLGELKHLSEQTSYYSDP 2H6B_B XXXBBBXXAAAAAAAXXXXXXXXXX cpchhhhphpchchhpcppphhpch 251- 300.........:.........:.........:.........:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + + NSSSVDKL 2H6B_B XXXXXXXX pppphcch 301- 308........ The seq2struc alignment: my_fasta_file ---> 3E6C_C align_len=308 ene=-77.00 identity=5.194805 hpc_err=32.467532 size_err=0.000000 ins=83 del=3 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphp phch hcphhhhhccpphcphhhhp XBBXXXXXXXXXXXXBBBBBXXX BBBB XXXBBBBBBXXXXBBBBBXX -MTWLPLNPIPLKDRVSMIFLQYG-QIDV-IDGAFVLIDKTGIRTHIPVG my_fasta_file ++ +++ ++ ++++ +| | ++| + | ++ + | DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVE 3E6C_C XXXXXXXXXXXXXXXXXXXXXXXXBBBBBXXXXBBBXXXXXXXXBBBBBB chhphhhhcphhhhcchcphpphphhcchhcpphhhhhpcchpphhhhhc 1- 50d........:.........:....d....d.........:.........: 51- 100........iii...iiiiiiiii......:......ii.:.......iii phhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpc XXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAA SVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSD my_fasta_file + + + + ++ + +| + + + + + + GKIKLDII---FED---------GSEKLLYYAGGNS--LIGKLYPTG--- 3E6C_C XXBBBBBB XXX XXBBBBBBBXXXX BBXXXXXXX pchchchh hcc ppcchhhhhpppp hhpchhhpp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.......i.:iiii.....:.........: chhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchch AAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAA KLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRA my_fasta_file + |+++ + + ++ ++++ |+ + + + + +++ |+ NNIYATAMEPTRTCWFSEKSLRTVFRT-DE----DMIFEIFKNYLTKVAY 3E6C_C XXBBBBBXXXBBBBBBXAAAAAAAAAA XX AAAAAAAAAAAAAAAA pphhhphhchpcphhhpccphcphhcp cc chhhchhcphhpchhh 101- 150.........:.........:.........:.........:.........: 151- 200........iiiiiiiiiiiiiii....iiiiiii.....:.........: phhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhh AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILA my_fasta_file + ++ | + + ++ |++ +| +++ YARQVAEM---------------NTYN-------PTIRILRLFYELCSSQ 3E6C_C AAAAAAAA XXXX AAAAAAAAAAAAAAAA hhcphhch pphp hphchhchhhchhppp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.iii...iiiiiiiii.iiiii.......:iiii...iii hphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccch XXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAA AGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREV my_fasta_file + + +++++ + + +|+ + + GKRVGDTYEIT---MPL---------S-----QKSIGEIT----GVH--- 3E6C_C XBBBXXBBBBB XXX X AAAAAAAA XXX pcchpcphchp hhh p pcphpchp phh 201- 250.........:.........:.........:.........:.........: 251- 300iiiiiiiiiiiii......:......ii.:.........:.........: chhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhph AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX RLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSL my_fasta_file ++ + ++ |++ ++++ + + ++ ++| -------------HVTVSRVLASLKR--ENILDKKKNKIIVYNLGELKHL 3E6C_C AAAAAAAAAAAAA XXXBBBXXXBBBBXXAAAAAAA hhphpchhhphcc cphhccccpchhhhphpchchh 251- 300.........:.........:.........:.........:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + +++| SEQTSYYS 3E6C_C AXXXXXXX pcppphhp 301- 308........ The seq2struc alignment: my_fasta_file ---> 3E5X_C align_len=308 ene=-64.00 identity=5.194805 hpc_err=30.194804 size_err=0.000000 ins=94 del=3 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphp phch hcphhhhhccpphcphhhhp XBBXXXXXXXXXXXXBBBBBXXX BBBB XXXBBBBBBXXXXBBBBBXX -MTWLPLNPIPLKDRVSMIFLQYG-QIDV-IDGAFVLIDKTGIRTHIPVG my_fasta_file ++ +++ ++ ++++ +| | ++| + | ++ + | DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVE 3E5X_C XXXXXXXXXXXXXXXXXXXXXXXXBBBBBXXXXBBBXXXXXXXBBBBBBB chhphhhhcphhhhcchcphpphphhcchhcpphhhhhpcchpphhhhhc 1- 50d........:.........:....d....d.........:.........: 51- 100.........:....ii...:.........:.........:.......iii phhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpc XXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAA SVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSD my_fasta_file + + + + + + + | + | ++ +++|+ || ++++ + GKIKLDIIFEDGSE--KLLYYAGGNSLIGKLYPTGNNIYATAMEPTR--- 3E5X_C XXBBBBBBXXXXXB BBBBBBXXXXBBXXXXXXXXBBBBBBXXXBB pchchchhhccppc chhhhhpppphhpchhhpppphhhphhchpc 51- 100.........:.........:.........:.........:.........: 101- 150iiiiiiiii:.iii.....:.......i.:iiii.....:.........: chhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchch AAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAA KLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRA my_fasta_file ++ + ++ ++++ |+ + + + + +++ |+ ---------TC---WFSEKSLRTVFRT-DE----DMIFEIFKNYLTKVAY 3E5X_C BB BBBAAAAAAAAAA XX AAAAAAAAAAAAAAAA ph hhpccphcphhcp cc chhhchhcphhpchhh 101- 150.........:.........:.........:.........:.........: 151- 200........iiiiiiiiiiiiiii....iiiiiii.....:.........: phhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhh AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILA my_fasta_file + ++ | + + ++ |++ +| +++ YARQVAEM---------------NTYN-------PTIRILRLFYELCSSQ 3E5X_C AAAAAAAA XXXX AAAAAAAAAAAAAAAA hhcphhch pphp hphchhchhhchhppp 151- 200.........:.........:.........:.........:.........: 201- 250......i..:.ii....iiiiiiiii.iiiii.......:iiii...iii hphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccch XXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAA AGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREV my_fasta_file + + ++ + + +|+ + + GKRVGD-TYEI--TMPL---------S-----QKSIGEIT----GVH--- 3E5X_C XBBBXX BBBB XXXX X AAAAAAAA XXX pcchpc phch phhh p pcphpchp phh 201- 250.........:.........:.........:.........:.........: 251- 300iiiiiiiiiiiii......:......iiiiiiiiiiiii:.........: chhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhph AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX RLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSL my_fasta_file ++ ++ ++ + +++++ -------------HVTVSRVLACLKR-------------ENILDKKKNKI 3E5X_C AAAAAAAAAAAAA XXXBBBXXXXB hhphpchhhhhcc cphhccccpch 251- 300.........:.........:.........:.........:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file ++ + IVYNLGEL 3E5X_C BBXXXXXX hhhphpch 301- 308........ The seq2struc alignment: my_fasta_file ---> 3B60_D align_len=572 ene=75.00 identity=6.118881 hpc_err=25.349650 size_err=0.000000 ins=0 del=267 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phh h hphhhh X BBX X XXXXXX M----------TWL-------------------------P----LNPIPL my_fasta_file + + + +++ WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT 3B60_D XAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAXAAAAXXXXXX hpphcchhhphhhhchphhhhphhhhhphhpcphhhphhchhhccphpcp 1- 50.dddddddddd...ddddddddddddddddddddddddd:dddd.....: 51- 100.........:.........:.........:.........:.........: c c chphhhhp X X XXBBBBBX K------D----------------------------------RVSMIFLQ my_fasta_file + |++ + + DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMM 3B60_D XAAAAAAXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ccphhhhhhhhhhphhhhcphpphhpphhhphhppchhhphccchhphhh 51- 100.dddddd.dddddddddddddddddddddddddddddddddd.......: 101- 150.........:.........:.........:.........:.........: hpphchhcphhhhhccpphcphhhhpphhhhhhchppchphhhhchhhph XXBBBBXXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAX YGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQV my_fasta_file +++ + | +++++++ | ++++++++++++ + +++ +|+ ++ + GMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM 3B60_D XXXXXAAAAXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA phhhhhhccppppphhpchphcpcphhppppphhhphhccphphhphhhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: pphhhhhpchphchhhppphpphcpcchhhphchhhccchchchhcchhc XXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAA GTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFE my_fasta_file ++ +|++ + +| |++++++ |++ ++ ++++++ +++ |+ + MFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQ 3B60_D AAAAXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA hhhhphphphhhhhhhhhhphhhchhpcchcphpcphppphpphppphcp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hchp ch hhhccphcphcphcpp AAAX XX AAAAAAAAAAAAAAAA LRFG-------EP---------------------APARRSVEQLRGIEGS my_fasta_file ++| + ++ | ++++++ MLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIA 3B60_D AAAXAAAAAAAXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA hhcphcchhhhpppchcpcchcchppchchpphchhphpphpchhhphhh 201- 250....ddddddd..ddddddddddddddddddddd.....:.........: 251- 300.........:.........:.........:.........:.........: chchphhhhhcphphphppc chchcchccpcphpphhphh AAAAAAAAAAAAXXXXXXXX XXXXXXXXXXXAAAAAAAAA RVRATYALLAKQYGVTWNGR----------RYDPKDWEKGDTINQCISAA my_fasta_file + + | |+ +++ + + +++++ ++|++ + SLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 3B60_D AAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA phhhhhhhhhhphhphhcphphpphphhhpphhhhhchhcphpphphphp 251- 300.........:.........:dddddddddd.........:.........: 301- 350.........:.........:.........:.........:.........: pphhhphpchhhhh hphhhh AAAAAAAAAAAAAA XXXXXX TSCLYGVTEAAILA-----------------------------AGYAPA- my_fasta_file ++|+ |||+ + + || RGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPAL 3B60_D AAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXBBBBBBBBXXXXXXXXXB cphhhhpphhhhhcpcpccccpcchhcchppchchcphphphhpcchhhh 301- 350.........:....ddddddddddddddddddddddddddddd......d 351- 400.........:.........:.........:.........:.........: hphhh p pchhphhhchhch BBBBB X XXXXXAAAAAAAA --IGFVH---T------GKPLSFVYDIADI-------------------- my_fasta_file | + ++ ++++ ++| RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 3B60_D BBBBBBBXXXXBBBBBBXXXXXAAAAAAAAXXXXXXXBBBBBBXXBBXXX cphphchhhpcphhhhpcppppcpphhphhpchhchccphhhhcphchcc 351- 400dd.....ddd.dddddd..:.........:dddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: hchcphhh chhchhccphpchc cchchhhc AXAAAAAA AAAAAAAXXXXXXX AAAAAAAA IKFDTVVP---------------KAFEIARRNPGEPD-REVRLACR---- my_fasta_file + ++ +|+ ||++ + | +| | YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 3B60_D XXAAAAAAXBBBBXXXXXXXXXXAAAAAAXXXXXXXXAAAAAAAAAXXXX hphhphcpphhhhppphhhhpcphhpphhhhcpcchpccphcchhchhhh 401- 450........ddddddddddddddd......:.......d.:......dddd 451- 500.........:.........:.........:.........:.........: chhcpp cphhchhhhhcchhh hp chph AAAAAA AAAAAAAAAAAAAAA XX XXXX DIFRSS-----------------KTLAKLIPLIEDVLA-AG-----EIQP my_fasta_file ++|+ ++ +| + |+ ++ | + MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 3B60_D AAAAAAXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAXXXBBBBBXXXX hchhpchcpphcphhpcpphhhppppcpchhhhchhhccphhhhhcchpp 451- 500......ddddddddddddddddd......:........d:.ddddd...: 501- 550.........:.........:.........:.........:.........: hhh hcc hphhhhhhhhp hp XXX XXX XXXXXXXXXXX XX PAP---------------PED-----AQPVAIPLPVS------LG----- my_fasta_file + + |++ ++ ++ +| ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 3B60_D XXXAAAAAAAAAAAAAAAXXXBBBBBXXXXXXXXXXXBBBBBBXXBBBBB hhcpcpcchhphhhcchpcpcpphhhhhchpphcphcchhhhccphhhcc 501- 550...ddddddddddddddd.:.ddddd...:.......dddddd..ddddd 551- 572.........:.........:.. c hph cpp X XXX XXX -D-------AGH-------RSS my_fasta_file | + GTHSELLAQHGVYAQLHKMQFG 3B60_D BXAAAAAAAXXXAAAAAAAXXX pphpchhhphphhhphhchphp 551- 572d.ddddddd:..ddddddd:.. The seq2struc alignment: my_fasta_file ---> 2C1Y_A align_len=305 ene=-82.00 identity=4.918033 hpc_err=36.393443 size_err=0.000000 ins=74 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:i.....iiii.........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++ + + + + | ++ + + +++ T--CTGCVDLDELSF-----EKT----VER-FPYSV----VKFDIAYPK- 2C1Y_A X XXXXBBXXXXXA AAA AXX XXBBB BBBBBXXXX p hpphhchcchph ccp hcc hhhph hchchhhhc 1- 50.........:.........:.........:.........:.........: 51- 100iiii.....:.........:........iiiii......:....iiiii: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++| + +| +| |+ ++ ++ + ----GEKHEAFTAFSKSAHKATKDLLIA-----TVGVKDYGELE-----N 2C1Y_A XAAAAAAAAAAAAAAAAXXXBBBB BBBBXXXXXXX X pcchchhphhpcphhchpcchhhh phphcchpchc p 51- 100.........:.........:.........:.........:.........: 101- 150........iiiiiii....:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ ++ | +++ ++ ++++ +||+ + + +++| KALGDRYK-------VDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKA 2C1Y_A AAAAAAXX XXXXXXXBBBBBXXXXXXBBBXXXXXXXXAAAAAA chhpcchc hcccphhphhhhcpphcchhphhphhchphcphch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....i....:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++ ++ + ++ ++|++ ++++|++| + ++ ++|+++ FVSANTPLYIGRDGCIKEFNEVLK-NYANIPDAEQLKLIEKLQAKQE--- 2C1Y_A AAAAAXXXXXXXXXXXAAAAAAAX XXXXXXAAAAAAAAAAAAAAAA hhphpphhhhpccphhcchpchhc phhphhchcphchhcchphcpc 151- 200.........:.........:.........:.........:.........: 201- 250iiiiiiiiii....ii...:...i.....:.......iiiii.......: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + ++ + +++ ++++ ++ ++ + ++ ----------QLTD--PEQQQNA-RAYLIYMRKIHEV-----GYDFLEEE 2C1Y_A XXXX AAAAAAA AAAAAAAAAAAAA XXAAAAAA phpc hcpppph chhhhhhcchhch phchhccc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiii..:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + |+ + + + +++|+ ++ + + ++ ++ TKRLLRLKAGKVTEAKKEELLRK--------------LNILEVFRVHKVT 2C1Y_A AAAAAAAAXXXXXAAAAAAAAAA AAAAXXXXXXXXX pcchhchchpchpchcccchhcc hphhchhchhchp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +++ KTAPE 2C1Y_A XXXXX cphhc 301- 305..... The seq2struc alignment: my_fasta_file ---> 1QAG_B align_len=305 ene=-88.00 identity=3.606557 hpc_err=38.032788 size_err=0.000000 ins=79 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ + ++++ + | |++| + + D--VQKKTFTKWINA-----RFS----KSG------KPPI-----NDMF- 1QAG_B X AAAAAAAAAAAA AAA XXX XXXX XXXX c hpccphpchhph chp cpp chhh pchh 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:i..iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + + ++ | + +| | ++ + +++++++ -----TDLKDGRKLLDLLEG-LT-----GTSLP----KERGSTRVHALNN 1QAG_B XXXXXXAAAAAAAAA AA XXXXX XXXXXXAAAAAAA pchccpcchhchhcp hp ppphh cccpppchhhhpp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++|+ ++ + | +++ ++ + + + +++++ ++ ++ +++ VNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVMKD 1QAG_B AAAAAAAAAAXXXXXXXXXAAAAAAXXAAAAAAAAAAAAAAAXAAAAAAA hpchhphhhppphchhphpppchhcpphchphphhhphhhhhphcchhcc 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiii.:....iiiiiiiiiiiii..:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + + ++ + ++++ VMSDL-------------QQTNSE-------------KILLSWVRQTTRP 1QAG_B AAAAA XXXXXX AAAAAAAAAAXXX hhpch pppppc chhhphhcpppch 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:....iiiiiiii.......:.........:....ii...: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ + + ++ + ++|++ + ++ +|+++ + ++++ YSQ-----VNVLNF--------TTSWTDGLAFNAVLHRHKPDLF--SWDK 1QAG_B XXX XXXXXX XXXXXXXAAAAAAAAXXXXXXX XAAA hpp hphhph ppphpcphhhphhhhchchchh phcc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + +++ ++ + ++ + + + + + |++ + +++++ ++ + VVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLF 1QAG_B AAAXXAAAAAAAAAAAAAAAAXXXXXXXAAAAXXXXXXAAAAAAAAAAAA hhchphhcchchhhpchpphhphcchhchcchhhchhcccphhhhhpphh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file ++ EVLPQ 1QAG_B AXXXX chhhp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2HWG_B align_len=572 ene= 6.00 identity=4.545455 hpc_err=28.146854 size_err=0.000000 ins=0 del=267 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhph X BB XXXXX -------M-------TW-----------LPLNP----------------- my_fasta_file + + +++ ISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKAS 2HWG_B XXXXBBBXBBBBBBBBBXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAA hpphhhphphhhpchhhhcccchhhcccchphcphcpchcchhppchchp 1- 50ddddddd.ddddddd..ddddddddddd.:...ddddddddddddddddd 51- 100.........:.........:.........:.........:.........: hhhccchphh hh php XXXXXXXBBB BB XXX -------IPLKDRVSMI------------FL--------------QYG-- my_fasta_file ++ ++ ++ + AQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTAD 2HWG_B AAAAAAAXXXXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAXXXAA hphcphcpchpcphpcccchhhcphhhhhcccchcpchhhhhccchhphc 51- 100ddddddd..:.......dddddddddddd:.dddddddddddddd...dd 101- 150.........:.........:.........:.........:.........: phch hcphhhhhc BBBB XXXBBBBBB ---------------QIDV----------------------IDGAFVLID my_fasta_file |+ ++ +|++ AAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSA 2HWG_B AAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX hhhhchhcpphphhcchccchhccchhchcchpcchhcphhphchhchph 101- 150ddddddddddddddd....dddddddddddddddddddddd........: 151- 200.........:.........:.........:.........:.........: cpphcphhh hpphhhhhhc hppchphhhhchhhphpph XXXXBBBBB XXXXBBBBBB XXXXXXAAAAAAAAAXXXB KTGIRTHIP-----------VGSVACIMLE-PGTRVSHAAVRLAAQVGTL my_fasta_file + +++ ++ + + | |+||++ + ++++++ IQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPA 2HWG_B XXXXBBBBBXXXXAAAAAAXXXXXBBBBBBXXXXXXXAAAAAAAAXXXXB hpcchhhhhhchphpcphphphcchhphhpchppcpphpphhhcphchhh 151- 200.........ddddddddddd.........:d........:.........: 201- 250.........:.........:.........:.........:.........: h hhhpchph chhhppp hpphcpcchhhphchhhccchch B BBBXXXXX BBBBXXX XXXXAAAAAAAAAAAAXXAAAAA L------VWVGEAGV--RVYASGQ---PGGARSDKLLYQAKLALDEDLRL my_fasta_file ++++ + + + +|+ ++ ++++ |++++++ + IVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKA 2HWG_B BXXXXXXXXXXXXXXBBBBBBXXXBBBBXXXAAAAAAAAAAAAAAAAAAA hhpppphppphcpcchhhhchhppphhhphppchhcchchhpcphhpcch 201- 250.dddddd..:.....dd..:....ddd..:.........:.........: 251- 300.........:.........:.........:.........:.........: ch hcchhchc hpc hhhhc AA AAAAAAAA AXX XAAAA KV--------------------------VRKMFELR-FGE-----PAPAR my_fasta_file ++ + |+ ++ + ELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLF 2HWG_B AAXXXXXXXXXXXXXXXXBBBBBBXXXXAAAAAAAAXXXXBBBBBXAAAA chhchcchhhhphcphphchhhphpphcchcphccpphcphphhcpchhh 251- 300..dddddddddddddddddddddddddd.:......d..:ddddd....: 301- 350.........:.........:.........:.........:.........: cp hcphcphcppchch phh hhhcphphphppcchchcc AA AAAAAAAAAAAAAA AAA AAAAAXXXXXXXXXXXXXX RS------VEQLRGIEGSRVRA--TYA----LLAKQYGVTWNGRRYDPKD my_fasta_file + +| +++ + ++ | +| + ++ + + +++ ++ MDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEE 2HWG_B AAXXXXXXAAAAAAAAAAAAAAXXXXXBBBBXXXXXXXXXXXXXXXXXXX hccchhhpcccphhhhchhhchhppphhhhcphchppccchhhhphhccc 301- 350..dddddd.:.........:..dd...dddd........:.........: 351- 400.........:.........:.........:.........:.........: hccpcphpphhphhpphhhphpchhhhhhphhhhhphhhppchhphhhch XXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAA WEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDI my_fasta_file ++++ +++++|+ + + + ++|||+| ++ +++ ++++ NPFLGWRAIRIAMDRREILRDQLRAILRASAFGKLRIMFPMIISVEEVRA 2HWG_B XXXXXXXXAAAAAAXAAAAAAAAAAAAAAXXXXXBBBBBXXXXXAAAAAA phhhphchhchhhcccchhccphchhhchphhpchchhhhhhhphcchch 351- 400.........:.........:.........:.........:.........: 401- 450.........:.........:.........:.........:.........: hchhchcphhhchhchhccphpc hc c chch AAAAXAAAAAAAAAAAAAXXXXX XX A AAAA ADIIKFDTVVPKAFEIARRNPGE------PD----R-EVRL--------- my_fasta_file ++++++++++++|++++ + + + +++| LRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFSI 2HWG_B AAAAAAAAAAAAAAXXXXXXXXXBBBBBBXXAAAAAXAAAAXXXXXBBBB hccchchhcpchcccpchhccphchphhhcphhhhphhchhhcchchhph 401- 450.........:.........:...dddddd:.dddd.d..:.ddddddddd 451- 500.........:.........:.........:.........:.........: hhcchhcp pcphhchhhhhcchhhhpc AAAAAAAA AAAAAAAAAAAAAAAAXXX -ACRDIFRS------------------SKTLAKLIPLIEDVLAAGE---- my_fasta_file ++ ++++ + +|++ ++ | ++ |+| GTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGM 2HWG_B XAAAAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXBBBB pppchpphphhhccppchhphhhphhphphhphhcphhchphhcpchpph 451- 500d........dddddddddddddddddd..:.........:......dddd 501- 550.........:.........:.........:.........:.........: hphhhhhcch phhh hhhh hph XXXXXXXXXX XXXX XXXX XXX IQPPAPPEDA------QPVA----IPLP---------VSL---------- my_fasta_file + |++| | ++ + + + + + CGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQ 2HWG_B XXXXXXXXXXAAAAAAXXXXBBBBXXXXAAAAAAAAAXXXAAAAAAAAAA hpchhpccchphhhhphphcchphphhphhchcchhcppphcchchhhcp 501- 550.........:dddddd...:dddd....ddddddddd..:dddddddddd 551- 572.........:.........:.. pchph cpp XXXXX XXX -GDAGH-------------RSS my_fasta_file +++++ ALAQPTTDELMTLVNKFIEEKT 2HWG_B AXXXXXAAAAAAAAAAAAAAAX hhhphppcchhphhpchhcccp 551- 572d.....ddddddddddddd:.. The seq2struc alignment: my_fasta_file ---> 2A01_C align_len=305 ene=-99.00 identity=4.262295 hpc_err=39.344263 size_err=0.000000 ins=62 del=0 begin1=0 begin2=0 1- 50iiiii....:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + | ++++ + ++ + ++++ |+ + -----DEPPQSPWDR-----VKD----LAT------VYVD-----VLKD- 2A01_C XXXXXXXXAA AAA AAA AAAA AAAA cchhpphhcc hcc hhp hhhc hhcc 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +| +++ + +| + + +++ ++ ++ + +| -----SGRDYVSQFEGSALGKQL-----NLKLL----DNWDSVTSTFSKL 2A01_C AAAAAAAAAAAAAAAXXX XXXXX XXXAAAAAAAAAA ppcchhpphcpphhpcph phchh cphcphppphpch 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.......ii:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + +++ ++ + ++ ||+ ++ + + ++ +++++ +++ + REQLGPVTQEFWDNLEKETEGLRQEMS--KDLEEVKAKVQPYLDDFQKKW 2A01_C AAAAAAAAAAAAAAAAAAAAAAAAXXX XXXXXAAAAAAAAAAAAAAAA ccphphhppchhcphcccpcphcpchp cchcchchchphhhcchpcch 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiiiiiiiii.....:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++++ + |+ ++|+ ++ ++ + + QEEME-------------------LYRQKVEPLRAELQEGARQKLHELQE 2A01_C AAAAA AAAAXAAAAAAAAAAAAAAAAAAXXX pcchc hhcpchchhchchpcphcpchhchpc 151- 200.........:.........:.........:.........:.........: 201- 250...i.....:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + + ++ + ++++ ++|++++ ++ ++ + + ++ + + + KLS-PLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGAR 2A01_C XXX XXXXAAAAAAAAAAAAAAAXAAAAAAAAAAAAAAAAAAAAAAAAAA chp hhpcchccchchhhchhcphhhhhpcchcpchhhchchhccppphc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + + + + ++++ + ++|+ | + +++|+ + ++ + LAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTK 2A01_C XXXXXXAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAAAAAAAAAA hhchhhchpchhpphpcchchhhcchcpphhhhhcphchphhphhcchpc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file KLNTQ 2A01_C AAAAX chppp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2IUU_F align_len=408 ene=-104.00 identity=6.862745 hpc_err=32.352942 size_err=0.000000 ins=0 del=103 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphh hhph pphchhcp XBBXXXXXXXXXXXXBBB BBXX XBBBBXXX MTWLPLNPIPLKDRVSMI-----------------FLQY---GQIDVIDG my_fasta_file + |+|++ ++ +| + |+++ + +++ LPPLSLLDPAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPV 2IUU_F XXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAXXXXBBBBBBBBXXX hhhhphhchhchcpcphphcphchhpchhchchcchphchphcphhhphh 1- 50.........:........ddddddddddddddddd....ddd.......: 51- 100.........:.........:.........:.........:.........: hhhhhc cpphcph hhhpphhhhhhc BBBBBB XXXXBBB BBXXXXBBBBBB --AFVLID---------------------KTGIRTH--IPVGSVACIMLE my_fasta_file +|+ ++ ++ |+ ||+ + +|+ + ITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIP 2IUU_F BBBBBBBBXXXXXAAAAAAXAAAAAAAXXXXXXBBBXXXXXXXXBBBBBB hpchchphhhphchpchpphhcchhcphhhhphchhchhhpcpphphchh 51- 100dd......ddddddddddddddddddddd:......dd.:.........: 101- 150.........:.........:.........:.........:.........: hppchphhhhc hhhp hpphhhhh pchphchh XXXXXXAAAAA AAAA XXXBBBBB XXXXXBBB --PGTRVSHAAVR--LAAQ--------------VGTLLVWV-GEAGVRVY my_fasta_file + +| ++|+ + +| ++ + + + NEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLV 2IUU_F XXXXXXXXAAAAAXXAAAAXXXXXXBBBBBBBXXXXBBBBBXXXXXXBBB pcccphhchpchhpphchcchcpphhhhhphchppchhhpchhchhhhhh 101- 150dd.......:...dd....dddddddddddddd......:.d.......: 151- 200.........:.........:.........:.........:.........: hppphpphcpcchhhphchhhccchch chhcchhchchpchhhh BXXXXXXXAAAAAAAAAAAAXXAAAAA AAAAAAAAAAAXXXAAA ASGQPGGARSDKLLYQAKLALDEDLRL------KVVRKMFELRFGEPAPA my_fasta_file | + |+ + ++ + + ++++ ++|+| AGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLL 2IUU_F BXXXXXXAAAAAAAAAAAAAXXXXXXXBBBBBBXXXXXXXXXXXXXXXXX hppppppcphphphhhhphhhcpphpchchhhhchchhchphhcphhhhh 151- 200.........:.........:.......dddddd......:.........: 201- 250.........:.........:.........:.........:.........: ccphcphcphcppchchphhhhhcphphphppcchchcchccpcphpphh AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAA RRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCI my_fasta_file +++| + ++++++ + ++ +++ + +|+|++ ++ |+ + CPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAG 2IUU_F XXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAXX hhhhpchcchhphhchphhchccchchhhhhphcphhphpcchcchcchp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: phhpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhh AAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAA SAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVP my_fasta_file | | + +++ ++ | ++ + ++ +| ++++ + + TPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIAR 2IUU_F XXXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXAAAAAAAAXAAAAAAAAA phhpchhhcccphccchhphpphhphhhhhcchhchhhhhpcchcchhhc 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: chhchhccp hpchccchchhhcchhc ppcphhchhhhh AAAAAAAXX XXXXXAAAAAAAAAAAA AAAAAAAAAAAA KAFEIARRN-------PGEPDREVRLACRDIFR-----SSKTLAKLIPLI my_fasta_file +|+ +++ + +++ + + ++ + + + +++ IAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 2IUU_F AAAAXXXXXBBBBBBBXXXXXXXXXAAAAAXXXBBBBBXXXXAAAAAAAA hhpchchhphhhhhhppchphchhpphhchphhpchhhphppchcpcphh 301- 350.........ddddddd...:.........:...ddddd.:.........: 351- 400.........:.........:.........:.........:.........: cchhhhpchphh hhhcchp hhhh hhhhph AAAAAXXXXXXX XXXXXXX XXXX XXXXXX EDVLAAGEIQPP-----APPEDAQ-----PVAI-----------PLPVSL my_fasta_file ++|+ + + |+ + + +|+++ DQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAP 2IUU_F XXXXXXXXXXXXBBBBBXXXXXXXBBBBBXXXXAAAAAAAAAAAAAXXXX cppphcphhphpchhhhhhppphhhchhphhhpccchhchhchhchcphh 351- 400.........:..ddddd..:....ddddd:...ddddddddddd.....: 401- 408........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + ++++ DYIEDILA 2IUU_F XXXXXXXX chhcchhh 401- 408........ The seq2struc alignment: my_fasta_file ---> 2A0L_B align_len=305 ene=-73.00 identity=5.573770 hpc_err=30.819672 size_err=0.000000 ins=91 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++++ +++ |++ ++ ++ H--PLVELGVSYAAL-----LSV----IVV------VVEY-----TMQL- 2A0L_B X XAAAAAAAAAAA AAA AAA AAAA AAXX h hhhchphphhhh hph hhh hhch phph 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:...iii...:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +| + ++ ++ +|++ ++| |+ + + ++ -----SGEYLVRLYLVDLILVII-----LWADY---AYRAYKSGDPAGYV 2A0L_B XXXXXAAAAAAAAAAAAX XXXXX XXXXXXXXXXXAAA ppchhhchhhhchhhhhh hhhch hhchhcppchhphh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.......iiiii.......:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + ++ + +++ + ++ + + |++ + + |+ ++| + + + KKTLYEIPALVPAGLLALIEGHLAGLG-----LFRLVRLLRFLRILLIIS 2A0L_B AXXXXXXXXXXXXXXXAAAAAAAAXXX XAAAAAAAAAAAAAAAAA ccphhchhhhhhhphhhhhcphhhphp hhchhchhchhchhhhhp 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiii......:.........:.........:.......i.: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +++|+ +++ +| + + ++ | +++ ++++| | RGSKF--------LSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIV-EY 2A0L_B AAAAA XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA AX cppch hphhhchhcchchhhhhphhhhphhhphhhhhhh ch 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:....iiiii:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + +| ++ ++ | |+ ++ ++ +++ PDP-----NSSIKS-----VFDA-LWWAVVTATTVGYGDVVPATPIGKVI 2A0L_B XXX XXXXXX AAAA AAAAAAAAXXXXXXXXXXXXAAAAAA hch ppphcp hhch hhhhhhphpphphpchhhhphhpchh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiiiiiiiiii hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +++ + + | +++ + GIAVMLTGISALTLLIGTVSNMF--------------------------- 2A0L_B AAAAAAAAAAAAAAAAAAAAAAA phhhhhpphphhphhhpphpphh 251- 300.........:.........:.........:.........:.........: 301- 305iii.. phcpp XXXXX GHRSS my_fasta_file ---QK 2A0L_B XX pc 301- 305..... The seq2struc alignment: my_fasta_file ---> 2JMU_A align_len=305 ene=-51.00 identity=6.229508 hpc_err=37.049180 size_err=0.000000 ins=81 del=0 begin1=0 begin2=0 1- 50iiiiiiiiii.........:iii......:.........:.....iii.: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ ++ ++ + ++ ++++ +| ++ + |+ ----------SAQGLIEVER---KFAPGPDTEERLQELGATLEHR---VT 2JMU_A XXXXXBBBBB BBBBXXXAAAAAAAAXXBBBBB BB phpphhchcc chhhphcpccchpchphphchc hp 1- 50.........:.........:.........:.........:.........: 51- 100.........:.iiiii...:.........:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++++ | ++ + ++ + |+++ +| + +|++|++ FRDTYYDTSEL-----SLMLSDHWLRQREGSGWELKCPGVTGVS------ 2JMU_A BBBBBBBXXXX AAAAXXXBBBBBXXXBBBBBBXXXXXXX hccphhcppch phhhpchhhcpccppphchchhphpphp 51- 100.........:.........:.........:.........:.........: 101- 150i........:.........:.......iiiiiiiiiiiiii........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++ +|++ ++ +++ +++ | + +++ | -GPHNEYVEVTSEAAIVAQLFELLGSG--------------EQKPAGVAA 2JMU_A XXXXXXBBBXXAAAAAAAAAAAAXXX XXXXXXAAA phhpchhchppchhhhhphhchhppp cpchhphhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiiiiiii......:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |+ ++++ + +++ + | +++ + ++ +|+ + VLGSLKLQEVASFITTRSSWKLAL---------SGAHGQEPQLTIDLDSA 2JMU_A AAAAAXXBBBBBBBBBBBBBBBBX XXXXXXXXBBBBBBBBB hhpphchpchhphhppcpphchhh pphhppchphphchcph 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iii..:...i.....:.........:....iiiiii hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + + +++ + + +| ++++ ++ + + +|+ + DFGYAVGEVEAMVH---EKAEVP-AALEKIITVSSMLGVPAQEE------ 2JMU_A XXXBBBBBBBBBBX XXXXAA AAAAAAAAAAAAABBBXXXX chphhhpchchhhh cchchh hhhcchhphpphhphhhpcc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiii......: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +++ ++++ + + + + +| +|+ ++ APAKLMVYLQRFRPLDYQRLLEA--------------------ASSGEAT 2JMU_A XXXAAAAAAAAAXAAAAAAAAAA XXXXXXX hhhchhhhhpchchhchpchhch hpppchp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file |+ +| GDSAS 2JMU_A XXXXX pcphp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2HGU_C align_len=305 ene=-70.00 identity=3.606557 hpc_err=40.983605 size_err=0.000000 ins=77 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...i.....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + + + ++ + +++ + +++ ++ +| + + |+ P--KHGKRYRALLEK-----VDP-NKIYTIDEAAHLVKELATAKFDETVE 2HGU_C X XXXXXXAAAAAA XXX XXXXXAAAAAAAAAAAXXXXXXXXXB h chpcchchhhcc hch pchhphcchhhhhcchhphchccphc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.ii......:.........:.......iiiii..i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++++ ++ ++ + + ++ | + | ++++ ++ | + VHAKLGIDPRR--SDQNVRGTVSLPHGLGKQVRVLAI-----AK-GEKIK 2HGU_C BBBBBXXXXXX XXXXXXXXXXXXXXXXXXXXBBBB XX AAAAA hhhchphchcc pcpphcpphphhhphpcphchhhh hc pcchc 51- 100.........:.........:.........:.........:.........: 101- 150........iii........:.......iiiii.......:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++ + | + ++ + + ++|+ + ++++ ++++ ++ EAEEAGAD---YVGGEEIIQKILDGWM-----DFDAVVATPDVMGAVGSK 2HGU_C AAAAAAXX BBBXAAAAAAAAAXXX XXXBBBBXXXXAAAAAAA chcchphc hhppcchhpchhcphh chchhhhphchhphhppc 101- 150.........:.........:.........:.........:.........: 151- 200.....ii..:.........:....iiiiiiiiiiii...:.......i.: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |++++ +++ +++++++ ++ + + + + + + LGRIL--GPRGLLPNPKAGTVGFN------------IGEIIREIKAG-RI 2HGU_C XAAAA XXXXXXXXXXXXXXXXX AAAAAAAAAAA XX hpchh phcphhhphchpphphp hpchhcchchp ch 151- 200.........:.........:.........:.........:.........: 201- 250...iii...:....iiiiiiiii.iiiiiiiiiiiii..:....iiiiii hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + ++ + + +++ +++ EFR---NDKTGAIH---------A-------------PVGKASF------ 2HGU_C XXX BBXXXBBB B XXXXXXX chc pccpphhh h hhpchph 201- 250.........:.........:.........:.........:.........: 251- 300iiii.....:.........:...iii...:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + ++++++ ++++ ++++|++ + +| +++ ++ ----PPEKLADNIRAFIRALEAH---KPEGAKGTFLRSVYVTTTMGPSVR 2HGU_C XAAAAAAAAAAAAAAAAAA XXXXXXXXXBBBBBBBXXXXXBBB hhcchhcphchhhchhchh chcphcpphhcphhhppphphphc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file ++++| INPHS 2HGU_C XXXXX hphhp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2K18_A align_len=305 ene=-54.00 identity=6.229508 hpc_err=37.704918 size_err=0.000000 ins=77 del=0 begin1=0 begin2=0 1- 50iiiiiiii.:.....ii..:...iiii..:iiiiii...:iiii.....: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +|| + +++ +++ + + |+ --------GPLGSPA--ATTLPD----GAA------AESL----VESSEV 2K18_A XXXXXXX BBBXXX AAA AAAA AAXXXX phhpphh hpphhc phh hcph hcppch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...iiiii.:.......iiiii..i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ ++|++|+ ++ + + ++ ++ + + ||+ + AVIGFFKDVESDSAKQFLQAAEA-----IDDIPFGIT-----SN-SDVFS 2K18_A BBBBBXXXXXXAAAAAAAAAAAA XXXXXBBBB XX AAAAA hhhphhcchcpcphcphhphhch hcchhhphp pp pchhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +++++++ ++|++| + ++ + +++++++ + +++++++ ++ KYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT 2K18_A AXXXXXXBBBBBXXXXXXBBBXXXXXXAAAAAAAAAAAXXXXXXBBXXXA chphcccphhhhcchccpcpphcpchpccphhchhchpphhhhhchpcpp 101- 150.........:.........:.........:.........:.........: 151- 200.....i...:.........:....iiiiiiiii......:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +++ |+ ++ + +++ + | + ++ ++ +| ++ + APKIF-GGEIKTHILLFLPKSVSD---------YDGKLSNFKTAAESFKG 2K18_A AAAAA XXXXXBBBBBBBXXXXXX AAAAAAAAAAAAAAXXX hhchh ppchcphhhhhhhcphpc hcpchpphcphhcphcp 151- 200.........:.........:.........:.........:.........: 201- 250.........:....ii...:....iiiiiiii.......:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + +| + +++ + | ++ ++ + + ++ + KILFIFIDSDHTDN--QRILEFFG--------LKKEECPAVRLITLEEEM 2K18_A XBBBBBBBXXXXXX AAAAAAAX XXXXXXXBBBBBBBXXXB chhhhhhcpchpcp pchhchhp hcccchhhhchhphccch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiiiii....: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + ++ | ++| +|++ +++ + ++ TKYKPESEELTAERITEFCHRFL----------------------EGKIK 2K18_A BBBXXXXXXXAAAAAAAAAAAAA XXXXX pchchcpcchphcchpchhhchh cpchc 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +|++| PHLMS 2K18_A XXXXX hhhhp 301- 305..... The seq2struc alignment: my_fasta_file ---> 3DKW_H align_len=306 ene=-65.00 identity=5.882353 hpc_err=35.620916 size_err=0.000000 ins=79 del=1 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhp hpphchhcphhhhhccpphcphhhhpph XBBXXXXXXXXXXXXBBBBBX XXBBBBXXXBBBBBBXXXXBBBBBXXXX MTWLPLNPIPLKDRVSMIFLQ-YGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file | ++ +++ | + + + | ++ + ++ ++ | ++ +++ + MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPA 3DKW_H XXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXBBBBBBXXXXXXXXXXXXX hchpchhpphhpphhhhchhphhphpchhhppchhphccphhhhcppchh 1- 50.........:.........:.d.......:.........:.........: 51- 100.........:..iiii...:.........:.........:.....iiiii hhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcch BBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAA ACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKL my_fasta_file + +| + + +++ ++ +|++ + + ++ HAFYYLISGCVK----IYRLTPEGQEKILEVTNERNTFAEAMMFM----- 3DKW_H XBBBBBBBXXBB XXXXXXXXXXXXXXXXXXXBBBXXXXXXX hhhhhhhpphhc hhchphcppcchhchppccpphhchhhhh 51- 100.........:.........:.........:.........:.........: 101- 150iiiiiii..iii.......:.........:.........:.........: hhphchhhccchchchhcchhchchpchhhhccphcphcphcppchchph AAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAA LYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATY my_fasta_file + +++| ++ + ++ + + + + + ++ + ++ +|+ -------DT---PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALL 3DKW_H XX XXXXXXXBBXXXBBBBBBBAAAAAAAAAXXAAAAAAAA cp hphhhphphhhhpphhchppchhhcphpcpphhhhhhh 101- 150.........:.........:.........:.........:.........: 151- 200......iiiiiiiiiiiiiiiiiii....:.........:.........: hhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhp AAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXX ALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAG my_fasta_file |+|+ + + +|++|+ |++ + + AKLSTR-------------------LHQRIDEIETLSLKNATHRVVRYLL 3DKW_H AAAAAA AAAAAAAAAAAAAAAAAAAAAAAXX hchppc hhpchcchcphphcphphchhchhh 151- 200.........:.........:.........:.........:.........: 201- 250....iiiii:.....iiiiiiiii.i...:.........:.....iiiii hhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchch XXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAA YAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRL my_fasta_file + | +++++ + ++ |+|+ + + +++ TLAA-----HAPGEN---------C-RVEIPVAKQLVAGHLSIQP----- 3DKW_H XXXX XXXXXX X XXXXXXAAAAAAXXXXXXX phhh hhhpcp h chchhhhcphhhphhphph 201- 250.........:.........:.........:.........:.........: 251- 300iiiiiiiiiiiii......:....iiiiiiii.......:.........: hhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpc AAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXX ACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGD my_fasta_file + ++|+++|+ ++ + + ++++ + ++ -------------ETFSRIMHRLG--------DEGIIHLDGREISILDRE 3DKW_H XAAAAAAAAAA XXXXXXXXXXXXXXXAAA cphpchhhchp ccphhhhcpcchphhccc 251- 300.........:.........:.........:.........:.........: 301- 306...... hphcpp XXXXXX AGHRSS my_fasta_file +++++ RLECFE 3DKW_H AAAAXX chchhc 301- 306...... The seq2struc alignment: my_fasta_file ---> 3C6T_A align_len=559 ene= 6.00 identity=4.293381 hpc_err=27.191412 size_err=0.000000 ins=0 del=254 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhcc chph XBBXXXXXXXXXX XXBB ----------------MTWLPLNPIPLKD-----------------RVSM my_fasta_file ++++|++++ + +++ NSPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKIS 3C6T_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAXXBB pphhphhcphhhchchphcphchcphhhpccchchhhchhpchcccpchp 1- 50dddddddddddddddd...:.........ddddddddddddddddd...: 51- 100.........:.........:.........:.........:.........: h hhphpphch hcphhhh hccpphcph B BBXXXBBBB XXXBBBB BBXXXXBBB I-----FLQYGQIDV-----IDGAFVL--------------IDKTGIRTH my_fasta_file + +++ + + +++ + + ++ KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPA 3C6T_A BXXXXXXXXXXBBBBXXXXXXXXBBBBXXAAAAAAXXXXXXXXXXXXXXX chphcphhpphhhhhccccppchcchhchcchpccppchhchphphhhhh 51- 100.ddddd...:.....ddddd.......dddddddddddddd........: 101- 150.........:.........:.........:.........:.........: hhhpphhhhhhc hppchphhhhchhhphpphhh hhpchph chhh BBXXXXBBBBBB XXXXXXAAAAAAAAAXXXBBB BBXXXXX BBBB IPVGSVACIMLE-PGTRVSHAAVRLAAQVGTLLV--WVGEAGV-RVYA-- my_fasta_file + + ++ + | + ++ | + + + + + + |+++ | + GLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNV 3C6T_A XXXXXXBBBBBBXXXXXXXXXXXAAAAXXXXBBBXXXXXXXXXBBBBBXX phccccphphhchpchhhphhhccchcchphhphhphppcphphchphph 101- 150.........:..d......:.........:....dd...:...d....dd 151- 200.........:.........:.........:.........:.........: ppphpph cpcchhhphchh hccchc XXXXXXX AAAAAAAAAAAA XXAAAA SGQPGGA------RSDKLLYQAKLA-------------------LDEDLR my_fasta_file ++|++ + |+ + +++ | + ++ LPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQH 3C6T_A XXXXXXXAAAAAAAAAAAAAAAAAAXXXXXBBBBBXXBBBBBBXXXAAAA hhpphcpphhhhppphpchhchhccpphchhhhphhcchhhppchchpph 151- 200.......dddddd......:.....ddddddddddddddddddd.....: 201- 250.........:.........:.........:.........:.........: hchhcchhchch p chhhh ccphcph AAAAAAAAAAAA X XXAAA AAAAAAA LKVVRKMFELRF--------------------G---EPAPA--RRSVEQL my_fasta_file + + + + | +|++ ++|+++ RTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPE 3C6T_A AAAAAAAAAAAAXXXXXXXXXXXXXXXXBBBXXBBBXXXXXBBXXXXXXX cpchcchcphhhchphpphccchpcchhhhhhphchhhcchphphhhhhc 201- 250.........:..dddddddddddddddddddd.ddd...:.dd......: 251- 300.........:.........:.........:.........:.........: cph cppchchphhhhhcphphphppc chchcchc cpcph AAA AAAAAAAAAAAAAAAXXXXXXXX XXXXXXXX XXXAA RGI--EGSRVRATYALLAKQYGVTWNGR-------RYDPKDWE--KGDTI my_fasta_file + + ++ +++|+ + ++ +++ + |+ ++++| ++ + KDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEE 3C6T_A XXXBBAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAXXXXXXXXBBXXXAA ccphphpchpchhpchphhpphhhphchcphhchhcppchhpchhhhpcc 251- 300...dd....:.........:........ddddddd....:...dd....: 301- 350.........:.........:.........:.........:.........: pphhphhpphhh phpchhhhhh phhhh hphhh pp AAAAAAAAAAAA AAAAAAAAAX XXXXX BBBBB XX NQCISAATSCLY-----GVTEAAILAA------GYAPA-IGFVH---TG- my_fasta_file + ++|+ + ||+++ +++ ++++ +++ + AELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKN 3C6T_A AAAAAAAAAAAAXXXXXXXXXXXXXXXBBBBBBXXXXXBBBBBBXXXXXB hchchhcpcchhcchhhphhhchpcchhhchpcppppphphphhpchhcp 301- 350.........:..ddddd..:.......dddddd.....d:....ddd..d 351- 400.........:.........:.........:.........:.........: chhphh hchhchhchcphhhchhchhccphp chccchc XXXXAA AAAAAAAXAAAAAAAAAAAAAXXXX XXXAAAA ------KPLSFV--YDIADIIKFDTVVPKAFEIARRNPG----EPDREVR my_fasta_file ++ + +| + + + + + +++ + ++ + |++ LKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 3C6T_A BBBBBBXXXXXXBBXAAAAAAAAAAAAAAAAAAAAXXXXBBBBXXXAAAA hcppchhchcphhppchcphpchhpchppcphhhhpcphchchhhpccph 351- 400dddddd...:..dd.....:.........:.........dddd......: 401- 450.........:.........:.........:.........:.........: hhhcch AAAAAA LACRDI-------------------------------------------- my_fasta_file ++ + + ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANR 3C6T_A AAAAAAXXXXXXXXXBBBXXXXXXXXXXXXXXXXXXXXXXBBBBBBBBXX cphhpchhphphhhchchhpphhhhchhhphccchhhphcphhhcphhpc 401- 450......dddddddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: h cppcphhchhhhhcchhhhpch p A AAAAAAAAAAAAAAAAAAXXXX X --------------F------RSSKTLAKLIPLIEDVLAAGEI------Q my_fasta_file + ++ + + |++ |++ ETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTD 3C6T_A XXXXBBBBBBBXXXXBBBBBBXXXXAAAAAAAAAAAAAAXXXXBBBBBBX cpchpchphhppcpcpchhphpcppppcpchphhhhhhpcpphchphhpc 451- 500dddddddddddddd.dddddd........:.........:...dddddd: 501- 550.........:.........:.........:.........:.........: h hhhh cc hp hhhhhhh hp X XXXX XX XX XXXXXXX XX P--------PAPP--ED------------AQ------PVAIPLP----VS my_fasta_file + +|+ | + | ++ ++ SQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQV 3C6T_A XAAAAAAAAXXXXBBXXAAAAAAAAAAAAXXBBBBBBXXXXXXXAAAAAA pphhhphhphphcppcpchhpphhcphhcccchhhhhhhhhcphpppcph 501- 550.dddddddd:...dd..dddddddddddd:.dddddd..:....dddd.: 551- 559......... hpchphcpp XXXXXXXXX LGDAGHRSS my_fasta_file + + + DKLVSAGIR 3C6T_A AAAAAXXXX cchhphphc 551- 559......... The seq2struc alignment: my_fasta_file ---> 1IEZ_A align_len=305 ene=-48.00 identity=4.590164 hpc_err=30.491802 size_err=0.000000 ins=88 del=0 begin1=0 begin2=0 1- 50iiiiiiiiiiiiiiiiiiiiiiiiiiiii:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + | -----------------------------M------NQTL-----LSSF- 1IEZ_A X XXXX XXXX h ppph hpph 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:.........:...iiii..:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + +++ ++ + | +| + + + + + -----GTPFERVENALAALREGRGVMVLDDEDR----ENEGDMI------ 1IEZ_A XXXXAAAAAAAAAAAXXXXBBBBXXXXX XXXXXXX pphhcchcphhhhhccpcphhhhccccc cpcpchh 51- 100.........:.........:.........:.........:.........: 101- 150iiiiii..i:.........:.......iiii........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + ++ |+ + | | + ++ ++ + + ------FP-AETMTVEQMALTIRHGSG----IVCLCITEDRRKQLDLPMM 1IEZ_A XX XXXXXAAAAAAAAAAXXX XXBBBBXAAAAAAXXXXXX hh hcphphcphhhphchppp hhhhhhpcccccphchhhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++ ++ + + +++++++ + + + +|++ + |+ ++ + VENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNR 1IEZ_A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXXXXXXXXXXXX hcpppphhppphphphchhcphppphphhcchpphchhhhcphchpchpc 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iiiiiiii.......:.........:....ii...: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + ++ ++++ + ++++ ++++ |+ ++| PGHVFPLRAQAGGV--------LTRGGHTEATIDLMTLAGFKPA--GVLC 1IEZ_A XXXXBBBBXXXXXX XXXXXXXAAAAAAAAXXXXXXX XXXX hphhhhhchphpph hpcpphpchphchhphhphchh phhh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiii.....:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++ ++ +++|++ + + + + +|+ + ++| ++ + ELTNDDGTMARAPECIEFANKHN-----------MALVTIEDLVAYRQAH 1IEZ_A XXXXXXXXXXXAAAAAAAAAAAA XBBBBXAAAAAAAAAA chppccpphhchhchhchhpchp hhhhphcchhhhcphh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + +| ERKAS 1IEZ_A AXXXX ccchp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2BGW_A align_len=305 ene=-70.00 identity=7.213115 hpc_err=32.786885 size_err=0.000000 ins=86 del=0 begin1=0 begin2=0 1- 50iiiiiiiiiiiiiiiiiiiii..iiii..:iiiiii...:.....iii.i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +|+ |+ + | ---------------------ML----EDP------GGRPRVYVD---V- 2BGW_A XX XXX XXXXBBBBB X hh cch ppchchhhc h 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.i.......:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + |++ ++|+++++ ++++ |++ + + + + + -----REERSP-VPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDF 2BGW_A XXXXXX AAAAAAAXXXBBBBBXXXXXXBBBBXXBBBBBBBAAAA ccccph hhphhcphphphhhcphhhpchhhpcphhhcccpppch 51- 100.........:.........:.........:.........:.........: 101- 150......i.i:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ + |++ +|+ ++ +++ + ++|+ ++ + +|+ | AKSLFD-G-RLFEQASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMA 2BGW_A AAAAAA X AAAAAAAAAAAAXXBBBBBBBXXXXXXXXXXXAAAAAAAAA hcphhc p chhcphpchhchhcphhhhhcphhhhcchcpcccphhhhhh 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiii.....:....iiiiiiii.......:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |++ | + +| + + |+|++ + ALQLD---------YGIRLMNTMD--------PKGTALVIESLARLSTRE 2BGW_A AAAAA XXXBBBBBXX AAAAAAAAAAAAAAAXXX hhphc hphchhpphc hcpphhhhcphhchppcc 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:....iiiiiii........:.......i.:....ii...: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file +++ ++ + |++++ +| + +|+| GGQ-----RIVIHK-------KPRLSDVREWQLYILQ-SFPGIG--RRTA 2BGW_A XXX XXXXXX XXXXXAAAAAAAAAAA XXXXXX AAAA ppp chhhhc chchpchcchphhhhp phhphp ccph 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiii.....:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +|+ +|+ ++++ + +++ ++ ++ ++++ ++++ + ERILERFGSLERFFTASKAEISK-----------VEGIGEKRAEEIKKIL 2BGW_A AAAAAAAXXAAAAXXXXAAAAAA XXXXXAAAAAAAAAAA cchhcchpphcchhphpchchpc hcphpccchcchcchh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file ++++ MTPYK 2BGW_A AXXXX hphhc 301- 305..... The seq2struc alignment: my_fasta_file ---> 1U63_A align_len=305 ene=-54.00 identity=6.229508 hpc_err=33.114755 size_err=0.000000 ins=91 del=0 begin1=0 begin2=0 1- 50.ii......:.....iii.:.........:.........:i........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | ++++ + + +++ ++ + + + | ++ + M--DREALLQAVKEA---RELAKPRNFTQSFEFIATLKEI-DMRKPENRI 1U63_A X XAAAAAAAAAAA AAXXXXXXXXXXBBBBBBXXXX XXXXXXXXX h ccchhhphhcch cchhchcphppphchhhphcch chcchcpch 1- 50.........:.........:.........:.........:.........: 51- 100.....iiii:.iiiiiiiii...iiiii.:.......iiiii..ii...: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ + + | | ++++ |+ | KTEVV----LP---------HGR-----GKEAKIAVI-----GT--GDLA 1U63_A XXBBB XX XXX XXXXXBBBB BX AAAA cpchh hh hpc pcchchhhh pp pchh 51- 100.........:.........:.........:.........:.........: 101- 150........iiii.......:....i..i.:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +|| + ++ ++ + + |+++ + ++ + +++++++++++++++ KQAEELGL----TVIRKEEIEELG-KN-KRKLRKIAKAHDFFIAQADLMP 1U63_A AAAAAAXX BBBBAAAAAAAA XX AAAAAAAAAAXXBBBBBXXXAA cphcchph phhcccchcchp cp ccchcchhchhchhhhphchhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiiiiii.......:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file | + + ||+ +| ++||+ ++ + ++ | ++ ++ + + LIGRYMGVILGPRGKMPKPVPANA--------NIKPLVERLKKTVVINTR 1U63_A AAAAAXXXXXXXXXXXXBBBXXXX XXAAAAAAAXXBBBXXXX hhpchhphhhphcpchhchhhhph phchhhcchccphhhppc 151- 200.........:.........:.........:.........:.........: 201- 250........iiiiiiiiiiiiiiiiiiiiiiiiiiiii..:....iiiiii hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ ++| + + DKPYFQVL-----------------------------VGNEKMT------ 1U63_A XXXBBBBB XXXXXXX cchhhphh hppcchp 201- 250.........:.........:.........:.........:.........: 251- 300iiiiii...:.........:...iiiii.:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + + + +| + + +++++ +++| + +++++ ------DEQIVDNIEAVLNVVAK-----KYEKGLYHIKDAYVKLTMGPAV 1U63_A AAAAAAAAAAAAAAAAA XXXXXXXXXXXBBBBBXXXXXX ccphhcphchhhphhhc chccphhhhcchhhchphphhh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file KVKKE 1U63_A XXXXX chccc 301- 305..... The seq2struc alignment: my_fasta_file ---> 2C9M_B align_len=994 ene=386.00 identity=2.917505 hpc_err=13.380282 size_err=0.000000 ins=0 del=689 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLW 2C9M_B XXXXXXXXAAAAAAAXXXXXXXXXXAAAAAAAAAAAXXXXXXXXXXXXXX hchhhpcppcchhhhhphpcppphphcphcchhcchphpchhhccpcphh 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: hphh XBBX -----------------------------------MTWL----------- my_fasta_file ++ ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIA 2C9M_B XXXXAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXAAAAAAAAAAA chhhcphcchhhchhhhhhhhphhhhhhccpccphphhhchhhhhhhhhh 51- 100ddddddddddddddddddddddddddddddddddd....ddddddddddd 101- 150.........:.........:.........:.........:.........: h hphhhhccch ph hhh phpp X XXXXXXXXXX BB BBB XXXB -----P---------LNPIPLKDRV---SM--------IFL-----QYGQ my_fasta_file +++ ++ + + + ++ + NAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDI 2C9M_B AAAAAXAAAAAAAAAXXXXXXXXXXBBBBBXXXXXXXXBBBXXXXXXXXB phhhphhpccphcphhchhcchchchpchhchcccphpchchcchhhpch 101- 150ddddd.ddddddddd....:.....ddd.:dddddddd.:.ddddd...: 151- 200.........:.........:.........:.........:.........: hch h cphhhhhc cpph c ph BBB X XXBBBBBB XXXX B BB IDV---I--DGAFVLID--KTGI--R----------TH------------ my_fasta_file | + +++ + | + VEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 2C9M_B BBBXXXXBBXXBBBBBBXXXXXXBBBXXXXXXXXXXBBXXXXXXXXXXXX hchhhpcchhhchchhphcppphchcpphhppcphphhchpchhhchchh 151- 200...ddd.dd:.......dd:...dd.dddddddddd..dddddddddddd 201- 250.........:.........:.........:.........:.........: hh hp ph hhhhhc BB XX XX BBBBBB ------IP-VG-----SV-ACIMLE------------------------- my_fasta_file +| + +| NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQ 2C9M_B XXXXXXBBXXXBBBBBXXBBBBBBBXXXXXXXAAAAXXXXXXXXXXXXXA ppcccphhhpppphhhpchhphhhppphppchpchccphhhpcpccphhp 201- 250dddddd..d:.ddddd..d:.....ddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: hp XX -----------------------------------------PG------- my_fasta_file + QKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 2C9M_B AAAAXAAAAAAAAAAAAXXXAAAAXXXXXXXXXXXXXXXXXXXAAAAAAA pchcchpcphpchhphhhhhhhhhphphhpchhhppphhcphhhhhchhh 251- 300ddddddddddddddddddddddddddddddddddddddddd..ddddddd 301- 350.........:.........:.........:.........:.........: pchp hh hhchhhp XXXX AA AAAAAAA ------TRVS----------------HA-------AVRLAAQ-------- my_fasta_file +++ + +++ ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS 2C9M_B AAAAAAXXXXAAAAAAAAAAAAAAAAAAXXBBBXXAAAAAAAXXXXBBBB hhhhhhhhcphhhhhpphhhhppcchhccphhhcphhphcphphpphhhp 301- 350dddddd...:dddddddddddddddd..ddddddd....:..dddddddd 351- 400.........:.........:.........:.........:.........: hpp hhhhh pchph ch h XXX BBBBB XXXXX BB B -------------------------VGT-LLVWV-----GEAGV-RV--Y my_fasta_file + ++ + +++|+ ++ + DKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDK 2C9M_B BXXXXXXXXXXBBBBBBBBXXXXXXXXXBBBBBBXXXXXXXXXXBBBXXB ccppphpppphphhchhhhcchcpchhphpchphpppphhhcpchhcpcc 351- 400ddddddddddddddddddddddddd...d:....ddddd:....d..dd: 401- 450.........:.........:.........:.........:.........: h p pphp ph cpcchhhphc B X XXXX XX AAAAAAAAAA A---------------------S-----GQPG-----GA-RSDKLLYQAK my_fasta_file | +| |+ +|+++ PIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVE 2C9M_B BXXXXXXAAAAAAAAAAAAXXXXBBBBBXXXXBBBBBXXAAAAAAAAAAA hhcppphcphhchhphhhhhpcpphchpcpcphhcchpchpcphhpphhc 401- 450.ddddddddddddddddddddd.ddddd.:..ddddd..d.........: 451- 500.........:.........:.........:.........:.........: hh hc cc hchchhcc AA XX AA AAAAAAAA LA---------LD--ED---LRLKVVRK---------------------- my_fasta_file + | | ++ + + KMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSP 2C9M_B AAXXXXXXXXXXXAAAAXXXAAAAAAAABBBBBBBXXXXXXXBBBBBBBB chphhppchcphpchcchphhpphhcphhccchphchpccccphphhhph 451- 500..ddddddddd..dd..ddd........dddddddddddddddddddddd 501- 550.........:.........:.........:.........:.........: hhchch pch hhhccphc AAAAAA XXX AAAAAAAA -----------------MFELRF--------------GEP--APARRSVE my_fasta_file + ++ | ++ + + AKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIK 2C9M_B XXXXXXXXXXBBBBBBXAAAAAAXBBBBXXXXXXBBXXXXAAAAAAAAAA hcppchhhppchhhcphhcphhcchphhchpppchhhpphhccchhphhc 501- 550ddddddddddddddddd..:...dddddddddddddd..:dd.......: 551- 600.........:.........:.........:.........:.........: phc phcppch AAA AAAAAAA QLR---------------------------GIEGSRV------------- my_fasta_file + ++ EWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGML 2C9M_B AAAXXXXXXBBBBBBBBXXXXXXXXXXXXXAAAAAAAXXXBBBBBBBBBB chpppccphchhhhhpccphhcccchhhccppchhchcpchphhphhphh 551- 600...ddddddddddddddddddddddddddd.......ddddddddddddd 601- 650.........:.........:.........:.........:.........: chphhhhhcphph php pcchchcchcc AAAAAAAAAAXXX XXX XXXXXXXXXXX ------RATYALLAKQYGV------TWN-----------GRRYDPKDWEK my_fasta_file + + +| | +| |+++ + + DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD 2C9M_B XXXXXXAAAAAAAAAAXXXBBBBBBXXXAAAAAAAAAAAXXXXXXXXXXX chhccchhpphphhcchphchhhhppcpcpphhhhhcchphhpcpcchhc 601- 650dddddd...:.........dddddd...ddddddddddd:.........: 651- 700.........:.........:.........:.........:.........: pc php phhphhpphh hphpchhhhh XX AAA AAAAAAAAAA AAAAAAAAAA GD-----TIN--QCISAATSCL----------YGVTEAAILA-------- my_fasta_file + ++ + + ++++++ + + + |+ RAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAM 2C9M_B XXBBAAAAAAXXAAAAAAAAAAXXBBBXXXXXAAAAAAAAAAXXXXXBBB chhppcchcchhhhcpcchhcchhhhhchchphcpchhchhpphcchphh 651- 700..ddddd..:dd.......:..dddddddddd.......:..dddddddd 701- 750.........:.........:.........:.........:.........: hphh hhhphhh pp chhp XXXX XXBBBBB XX XXXX ---AGYA------PAIGFVH----------TG---KPLS----------- my_fasta_file ++++ +|| +++ TGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 2C9M_B BBXXXXXAAAAAAXXBBBBBXXXXAAAAAAXXBBBXXXXAAAAAAAAAAA ppcphpchhhhcchchphhhpppphhhcphpchhhhccphpphhhhhccp 701- 750ddd....dddddd......:dddddddddd..ddd....ddddddddddd 751- 800.........:.........:.........:.........:.........: hhhchhchh c hcphhhchh AAAAAAAAA X AAAAAAAAA ---------------------FVYDIADII-------K--FDTVVPKAF- my_fasta_file | + + +++ |++ + RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTD 2C9M_B AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAX chhhpphcphhchhhppphpchhhhhhphhhphhchhhhhphhhhphhpc 751- 800ddddddddddddddddddddd........:ddddddd.dd.........d 801- 850.........:.........:.........:.........:.........: chhc cphpchc cchc AAAA XXXXXXX AAAA -EIAR------------------RNPGEPD----------------REVR my_fasta_file + | + +++ + | GLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVG 2C9M_B XAAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAA phhhphhphphhchchhcchhcphcchhhpphhhhchhhhpphhphhphp 801- 850d....dddddddddddddddddd......:dddddddddddddddd...: 851- 900.........:.........:.........:.........:.........: hhhcch hcppcph AAAAAA AAAAAAA LACRDI-------------------------------------FRSSKTL my_fasta_file | ++ ++ + AAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMA 2C9M_B AAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAA hhhhhhhhhccphphphhphphhhphpcchhhhcphchchhchhchhphh 851- 900......ddddddddddddddddddddddddddddddddddddd......: 901- 950.........:.........:.........:.........:.........: hchhhhhcchhh hpchphhhhhcch p AAAAAAAAAAAA XXXXXXXXXXXXX X AKLIPLIEDVLA-----AGEIQPPAPPEDA-------------------Q my_fasta_file +||+ +| + ++ + ||+++ + LSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYV 2C9M_B AAAAAAAAAAAAXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAX hphhhphchhphhpphpcppphhchhhhhphhhhpphhhphphhhhhhhh 901- 950.........:..ddddd..:.........:ddddddddddddddddddd: 951- 994.........:.........:.........:.........:.... hhhhhhhhphpch p hcpp XXXXXXXXXXXXX X XXXX PVAIPLPVSLGDA-----------G---------------HRSS my_fasta_file + ++++++ + + DPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLEG 2C9M_B XXXXXXXXXXXXXAAAAAAAAAAAXAAAAAAAAAAAAAAAXXXX chhhhhhchchhchpphhhhhchphhhhphcchhchhhcphhcp 951- 994.........:...ddddddddddd.ddddddddddddddd.... The seq2struc alignment: my_fasta_file ---> 2CGT_G align_len=524 ene=-22.00 identity=3.816794 hpc_err=29.389313 size_err=0.000000 ins=0 del=219 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhph hhhccchphh X BB XXXXX XXXXXXXBBB -M---TW------------------------LPLNP---IPLKDRVSMI- my_fasta_file ++ + ++++ + + AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITK 2CGT_G XXBBBBBAAAAAAAAAAAAAAAAAAAAXXXXXXXXXBBBXXXXXXXBBBX hhcchchppchchchhcphphhhchhchphphcpcphhhccphphhphpc 1- 50d.ddd..dddddddddddddddddddddddd.....ddd:.........d 51- 100.........:.........:.........:.........:.........: hhp BBX ----------------------------------FLQ------------- my_fasta_file ++ DGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIIT 2CGT_G XAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAA cphphhcchchccchcphphphhcchhpchpchhpcpppphphhhphhhp 51- 100dddddddddddddddddddddddddddddddddd...ddddddddddddd 101- 150.........:.........:.........:.........:.........: hpphc hhcphh XXBBB BXXXBB ------YGQID----------------------VIDGAF----------- my_fasta_file + + ++++ EGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTIS 2CGT_G AAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAA cphchhhhphphhchccphcchhphhhcchchhphhhpcpchhhphpphp 101- 150dddddd...:.dddddddddddddddddddddd......ddddddddddd 151- 200.........:.........:.........:.........:.........: hhhc cpph cphhh hpphhhhhhchp pchphh BBBB XXXX BBBBB XXXXBBBBBBXX XXXXAA VLID--------------KTGI-RTHIP-VGSVACIMLEPG---TRVSHA my_fasta_file ++| + +| ++ +|++++ + ++| |++ + ANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLS 2CGT_G XXXXAAAAAAAAAAAAAAXXXXBBBBBBXXXXXXBBBBBXXBBBXXXXXX hppccphpchhhchhcchpccphhphccppphpcchchhcphphccphhp 151- 200....dddddddddddddd.:..d.....d:.........:.ddd.....: 201- 250.........:.........:.........:.........:.........: hhchhhphpphhhhhpchphch hhppphpphcpcchhhphchhh AAAAAAAXXXBBBBBXXXXXBB BBXXXXXXXAAAAAAAAAAAAX AVRLAAQVGTLLVWVGEAGVRV-YASGQPGGARSDKLLYQAKLAL----- my_fasta_file + ++++ + + + + + +++ +++++ +++++ PYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIA 2CGT_G XXXXXXXXXXXBBBBXXBBBBBXXXXXXXXXXAAAAAAAAXXXXXBBBBB hhhhpchcpphhchcphhhhhhccchpphcchhhhhchhhchpchhhhhh 201- 250.........:.........:..d......:.........:.....ddddd 251- 300.........:.........:.........:.........:.........: ccchchchhcchhchchpchh hhccphcphcphcppchchphhh XAAAAAAAAAAAAAAAAXXXA AAAAAAAAAAAAAAAAAAAAAAA DEDLRLKVVRKMFELRFGEPA----PARRSVEQLRGIEGSRVRATYAL-- my_fasta_file ++ ++ + +++|+ + +|+ ++ + + + + |+++ EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 2CGT_G XXXXAAAAAAAAAAAAAXXXXBBBBXXXXXXAAAAAAAAAAAAAAXXXBB cchcpchhhphhhpphcphhchhhhchhphpcccchhhpchhphpppphh 251- 300.........:.........:.dddd....:.........:........dd 301- 350.........:.........:.........:.........:.........: hhcphphphppcchch cchc cpc phpphhphhpph AAAAXXXXXXXXXXXX XXXX XXX AAAAAAAAAAAA LAKQYGVTWNGRRYDP--------KDWE------KGD-TINQCISAATSC my_fasta_file ++ ++++++ + ++| + +| + +|+++|++ + SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 2CGT_G XXXXXXXXXXXXXXXXBBBBBBBBXXXXBBBBBBXXXAAAAAAAAAAAAA pcchphchcchphcchpphcchhhpccppphhcphpcchhhppchhphcp 301- 350.........:......dddddddd....dddddd...d.:.........: 351- 400.........:.........:.........:.........:.........: h hphpchhhhhhphhhhhphhhppchhphhhchhchhchcphh A AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAA L-------YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVV my_fasta_file + | + +++ | |++ + ++|+ + + ++ +++|+ QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALH 2CGT_G AXXXXXXXAAAAAAAAAAAAAXXXBBBBBBXXXXXAAAAAAAAAAAAAAA phcchppchcccchpcchhchhpphhhhchphhpchchcccchchcchhh 351- 400.ddddddd.:.........:.........:.........:.........: 401- 450.........:.........:.........:.........:.........: hchhchhcc phpchccchchhh cchhcppcphhchh hhh AAAAAAAAX XXXXXXAAAAAAA AAAAAAAAAAAAAA AAA PKAFEIARR--NPGEPDREVRLAC--------RDIFRSSKTLAKLI-PLI my_fasta_file + + + ++| +++++ ++ |+++ +|+ ATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPL 2CGT_G AAAAAAAXXBBBXXXAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAXAAA hpchhhccphhhppphhhhchhpchhchcpppccpphphchhhchhchhh 401- 450.........dd........:....dddddddd.......:......d..: 451- 500.........:.........:.........:.........:.........: cchhhhpchp hhhhh cchp hhhhhh AAAAAXXXXX XXXXX XXXX XXXXXX EDVLAAGEIQ---------PPAPP----EDAQ----PVAIPL-------- my_fasta_file ++ + +++++ +++ + + RQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTR 2CGT_G AAAAAXXXXXAAAAAAAAAXXXXXBBBBXXXXBBBBXXXXXXBBBAAAAA cphhhphpcchphhhpphcppcpphphphhpcchpphhchphhchpchpc 451- 500.........:ddddddddd:....dddd.:..dddd...:..dddddddd 501- 524.........:.........:.... hhphpchphcpp XXXXXXXXXXXX ------------PVSLGDAGHRSS my_fasta_file + + ++ ++ SALQYAASVAGLMITTECMVTDLP 2CGT_G AAAAAAAAAAAAAXXXXBBBBBXX phhphhhphhphhhppchhhpchh 501- 524dddddddddddd.......:.... The seq2struc alignment: my_fasta_file ---> 2IX8_A align_len=976 ene=403.00 identity=2.049180 hpc_err=14.344262 size_err=0.000000 ins=0 del=671 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhhcc XBB XXXXXXXXXX ---------------------MTW------------LPLNPIPLKD---- my_fasta_file + ++++ + +++ SDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFF 2IX8_A XAAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAXXXXXXXXXXAAAA pcpppphchhcchhpchphhphcpchchhpchhphhppphhchchhchhh 1- 50ddddddddddddddddddddd...dddddddddddd...:......dddd 51- 100.........:.........:.........:.........:.........: chphh hhphpphchh cp hhh XXBBB BBXXXBBBBX XX BBB -------RVSMI-----------FLQYGQIDVI-----DG-------AFV my_fasta_file + ++ +|+ ++++ + |++ GELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN 2IX8_A AAAAAAAXXXXXAAAAAAAAAAAXXXXXXXXXXAAAAAXXAAAAAAAXXX pchhcphccccphhphhphhhhhhpppphphphchhhhphhhhhhpphpp 51- 100ddddddd..:..ddddddddddd......:...ddddd.:ddddddd..: 101- 150.........:.........:.........:.........:.........: hh ccpph cph BB BXXXX BBB LI-----------------DKTGI--------------RTH--------- my_fasta_file ++ + ++ + KDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA 2IX8_A XXAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAAXXXAAAAAAAAA cccchpphhpcphhphhphhphhhhchhhhhhpphhhcppchpcchhhhh 101- 150..ddddddddddddddddd:....dddddddddddddd.:.ddddddddd 151- 200.........:.........:.........:.........:.........: h hhpph hhhh B BXXXX BBBB --------I------------------PVGSV--------------ACIM my_fasta_file + +++ AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 2IX8_A AAAAAAAAXAAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAAXXXX hhphhhchhccphhhchhchhhhhpcphhcpccchchhhphhhpchpcph 151- 200dddddddd.dddddddddddddddddd..:..dddddddddddddd...: 201- 250.........:.........:.........:.........:.........: hchppchp hh hhchhhp hpphhhhh BBXXXXXX AA AAAAAAA XXXBBBBB LEPGTRVS-------HA----AVRLAAQ---VGTLLVWV----------- my_fasta_file + + + ++ | + + + + + + DNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLL 2IX8_A XXXXXXXXAAAAAAAAAXXXXAAAAAAAXXXXXXXXXXXAAAAAAAAAAA cpcchcchhhphhphhhchpchhcphhhhphpphhhchphhphphhhhhh 201- 250........ddddddd..dddd.......ddd........ddddddddddd 251- 300.........:.........:.........:.........:.........: pchp hchhh ppp h XXXX XBBBB XXX X ----GEAG---------------VRVYA--------SGQ----------P my_fasta_file |+ ++|++ + SRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI 2IX8_A AAAAXXXXAAAAAAAAAAAAAAAXXXXXAAAAAAAAXXXAAAAAAAAAAX pcphpcccpphcccphhhhcphhchhcchphhhhhhpchhhphcpphhph 251- 300dddd....ddddddddddddddd.....dddddddd...dddddddddd: 301- 350.........:.........:.........:.........:.........: pp hc pcchhhphchh XX XA AAAAAAAAAAA GG----------------AR----------------SDKLLYQAKLA--- my_fasta_file + + +|++ + ADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 2IX8_A XXAAAAAAAAAAAAAAAAXAXXXXXXXXXXXXXXXXAAAAAAAAAAAXXX hchchcchphchhcphcchpphpccchhhchphhpchppphphhpchhcc 301- 350..dddddddddddddddd.:dddddddddddddddd...:.......ddd 351- 400.........:.........:.........:.........:.........: hccchchchhcchhchch pc h hh hccph XXAAAAAAAAAAAAAAAA XX X AA AAAAA -----LDEDLRLKVVRKMFELRF---GE-------P--AP-----ARRSV my_fasta_file ++ + +++ +++ |++ + + ++ ETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAK 2IX8_A XXXXXXXAAAAAAAAAAAAAAAAXXXXXAAAAAAAXAAAAXXXXXAAAAA cphhhchchhhchhhhhphchhccchhcpphhhphhphhhphhhhccchc 351- 400ddddd....:.........:...ddd..ddddddd.dd.:ddddd....: 401- 450.........:.........:.........:.........:.........: cphcphcppch AAAAAAAAAAA EQLRGIEGSRV--------------------------------------- my_fasta_file +| +| DILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQL 2IX8_A AAAAAAAAAAAXXXXXXXXXXXXXXXXXBBBXXBBXXXXXXXXXXXXBBX chhcchccchhcphhhphphccccccpcchhphchphhhphchhhpcpph 401- 450.........:.ddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: chphhhhhcp h AAAAAAAAAA X -----------------RATYALLAKQ----------------------Y my_fasta_file +| + + + RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG 2IX8_A XBBXXXXXBBXXXXXXXAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXX chcchcchphhphpphpcpphhchhhppphcphhppcchcphhhchchcp 451- 500ddddddddddddddddd..:.......dddddddddddddddddddddd: 501- 550.........:.........:.........:.........:.........: phphppcchchcchccpc phpphhphh pphhhp XXXXXXXXXXXXXXXXXX AAAAAAAAA AAAAAA GVTWNGRRYDPKDWEKGD--TINQCISAA---------------TSCLYG my_fasta_file + ++++ + + +| +| + ++ + THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMK 2IX8_A XXXXXXXXXXXXXXXXXXAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAA phpcpphhchhhcpphppcchhccchhchphpcchhhhhhphhppphchc 501- 550.........:........dd.........ddddddddddddddd.....: 551- 600.........:.........:.........:.........:.........: hpchhhhh hphh hh hph AAAAAAAA XXXX XX BBB VTEAAILA---------------AGYA-----------PA--IGF----- my_fasta_file ++|+ + + + | LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 2IX8_A AAAAAAAAXXXXBBBBBXXXXXXXXXXAAAAAAAAAAAXXBBBBBXXXAA hhhhchhhcphchhhhcchpphhcphphhhhhphhpphphpphphphcph 551- 600........ddddddddddddddd....ddddddddddd.:dd...ddddd 601- 650.........:.........:.........:.........:.........: hh ppchhp hh BB XXXXXX AA --------VH-------TGKPLS-----FV-------------------- my_fasta_file +++ ++ FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFP 2IX8_A AAAAXXXXBBXXXXXXXXXXXXXAAAAAAAXXXXXXXXXXXXXXXXXXXX hhcphhchhhphcphchcchcpphpchhcchhhhchhcchpppchchchh 601- 650dddddddd.:ddddddd..:...ddddd.:dddddddddddddddddddd 651- 700.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file EPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIG 2IX8_A XXXXXXXXXXXXXXXBBBBBBXXXXXXXXXXXXXXBBBBBXXXXBBBXXX chphhcphcpcpchhhchpphchphhpppchphpchphphphppchhhhp 651- 700dddddddddddddddddddddddddddddddddddddddddddddddddd 701- 750.........:.........:.........:.........:.........: hchhchh c AAAAAAA X ------YDIADII------------------------------------K my_fasta_file + PNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKT 2IX8_A XXXXXXAAAAAAAXXXXXXXXXXXXXXXXXXBBXXXXXXXXXXXXXXXXX hpphpcpphhphhppchhhpppchhphcphchhhhcphhhhhhcphhccp 701- 750dddddd...:...dddddddddddddddddddddddddddddddddddd: 751- 800.........:.........:.........:.........:.........: hc AA ------FD------------------------------------------ my_fasta_file PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 2IX8_A AAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXBBBXXBBBXXXBBXX hpchhphchpppccccphcchpcphpcpchchhpchhchcpphcchhphh 751- 800dddddd..dddddddddddddddddddddddddddddddddddddddddd 801- 850.........:.........:.........:.........:.........: phh AAA -----------------------------------------------TVV my_fasta_file +++ SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 2IX8_A XBBBXXBBBBXBBXBBBBXXXXXXXBBBBXXXXXXXXBBXXXXXXXXAAA pccchcpphchchphhhpcphphcpcchhhhhphcphhhhcpchhcphpc 801- 850ddddddddddddddddddddddddddddddddddddddddddddddd..: 851- 900.........:.........:.........:.........:.........: hchhchhc cphpchc cch chhh cchh AAAAAAAA XXXXXXX AAA AAAA AAAA PKAFEIAR----RNPGEPD-----REV------RLAC---------RDIF my_fasta_file +|+++ ++ |+ | + ++ MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 2IX8_A AAAAAAAAXXXXXXXXXXXAAAAAAAAXXXXXXAAAAXXXXXXXXXAAAA hhhchchcchhhppphchhpccchcchhphhphchchhphpchcphpppp 851- 900........dddd.......ddddd...dddddd....ddddddddd...: 901- 950.........:.........:.........:.........:.........: cppcphhc hhhhhcchhh hpchp hhh AAAAAAAA AAAAAAAAAA XXXXX XXX RSSKTLAK------------------LIPLIEDVLA--AGEIQ----PPA my_fasta_file + ++||+ ++++ + ++ + ++ + KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITH 2IX8_A AAAAAAAAXXXXXXBBXBBXXXXXXXAAAAAAAAAAXXXXXXXBBBBXXX chchhhhhpphpchhhhhhcchpphhcccphphhpchhcchcpphhhhph 901- 950........dddddddddddddddddd...:......dd.:...dddd..: 951- 976.........:.........:...... hhcchphhh hhhhhphpchphcpp XXXXXXXXX XXXXXXXXXXXXXXX PPEDAQPVA--IPLPVSLGDAGHRSS my_fasta_file + |++ + + + + ++++ + SAEFTKNLTEEVWAVKDGRMTPSGHN 2IX8_A XXXXXXXXXBBXXXXXXXXXXXXXXX phchpcphpcchhhhccpchphpphp 951- 976.........dd........:...... The seq2struc alignment: my_fasta_file ---> 1WE3_N align_len=526 ene=-20.00 identity=6.463879 hpc_err=26.996198 size_err=0.000000 ins=0 del=221 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhhccchphh hhphpphc X BB XXXXXXXXXXXXBBB BBXXXBBB M---TW-----------------LPLNPIPLKDRVSMI--FLQYGQID-- my_fasta_file + +++ + |++ + ++ | AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKD 1WE3_N XBBBBBAAAAAAAAAAAAAAAAAAAXXXXXXXXXXBBBXXXXXXXBBBXX hchhhhcchhcchhccphphhhphhchphphcpcphhhccchpphphpcc 1- 50.ddd..ddddddddddddddddd......:........dd........dd 51- 100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file GVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVRE 1WE3_N AAAAAAAXXXXXAAAAAAAAAAAAAAAXXAAAAXXXAAAAAAAAAAAAAA phphhcchchcchhcphphphhcchhpcppchhpcpppphphhhphhhcc 51- 100dddddddddddddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: hhcphhh BXXXBBB -------------------------------VIDGAFV------------ my_fasta_file ++ ++ GLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISA 1WE3_N AAAAAAXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAA phcphhhphphhhhccphcchhchhhcchchhhhhhcccchhcchhphph 101- 150ddddddddddddddddddddddddddddddd.......dddddddddddd 151- 200.........:.........:.........:.........:.........: hh ccpphcphh hhpph hh hhhchppchphh BB BXXXXBBBB BXXXX BB BBBBXXXXXXAA LI--------------DKTGIRTHI--PVGSV---AC-IMLEPGTRVSHA my_fasta_file ++ | ||+| + +++ + + +++ + | NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPY 1WE3_N XXAAAAAAAAAAAAAAXXXXXBBBBXXXXXXXBBBBBXBBBBXXXXXXXX pchchpchhhchhcchpccphhphccpcphcpchchhcphphccphhphh 151- 200..dddddddddddddd...:.....dd..:..ddd..d.:.........: 201- 250.........:.........:.........:.........:.........: hhchhhphpphhhhhpchphchhhppphpphcpcchhh phc hhh AAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAAA AAA AAX AVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLY--QAK---LAL- my_fasta_file | + + + |++ ++ +| ++ | ++ + +++ + ++ |+ FVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAED 1WE3_N XXXXXXXXXBBBBBBBBBXXXXBBXXXXXXAAAAAAAAXXXXXBBBXXXB hhpphcphchhhcchhhhhhccchpphcchhhhhcphhpppchhhhhhcc 201- 250.........:.........:.........:........dd...ddd...d 251- 300.........:.........:.........:.........:.........: ccchchchhcchhchchp chhhhccphcphcphcppchchphhhhh XAAAAAAAAAAAAAAAAX XXAAAAAAAAAAAAAAAAAAAAAAAAAA -DEDLRLKVVRKMFELRFG---EPAPARRSVEQLRGIEGSRVRATYALLA my_fasta_file + |+ + + ++||++ + ++++ +++| + + ++ VEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 1WE3_N BXAAAAAAAAAAAAAXXXXBBBXXXXXXXAAAAAAAAAAAAAAXXXXXXX hcpchhhphhhpchcpphphhhhchhphpccccchhcchhhhpppphhpc 251- 300d........:.........ddd.......:.........:.........: 301- 350.........:.........:.........:.........:.........: cphphphppcchch cchc cpc phpphhphhpp AAXXXXXXXXXXXX XXXX XXX AAAAAAAAAAA KQYGVTWNGRRYDP--------KDWE------KGD----TINQCISAATS my_fasta_file ++++++|+ +++ +| || ++++++ + ELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKEL 1WE3_N XXXXXXXXXXXXXXBBBBBBBBXXXXBBBBBBXXXAAAAAAAAAAAAAAA chphchcphphphhpchcchchpcccpphhppcpcccchchchpphccch 301- 350.........:....dddddddd....dddddd...dddd:.........: 351- 400.........:.........:.........:.........:.........: h hhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhc A AAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAA C----LYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPK my_fasta_file + +|++ +++ | |++ + ++|+ + ++ ++ +++|+ + ETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNAT 1WE3_N AXXXXAAAAAAAAAAAAAAXXXBBBBBXXXXXAAAAAAAAAAAAAAAAAA cppcpchhccchpcchhchhpphhhhchphhpcpchcccchchcchhphp 351- 400.dddd....:.........:.........:.........:.........: 401- 450.........:.........:.........:.........:.........: hhchhcc php chccchchhh cchhcppcphhch hhhh AAAAAAX XXX XXXAAAAAAA AAAAAAAAAAAAA AAAA AFEIARR---NPG----EPDREVRLAC----RDIFRSSKTLAKL--IPLI my_fasta_file + + + +| + +| + |+ +|+ + +| + RAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPAR 1WE3_N AAAAAAXBBBXXXAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAXXAAAA chhhccphhhppphphhchhphhcchhcchcpcchpphchhcchhcchhc 401- 450.......ddd...dddd..:.......dddd........:....dd...: 451- 500.........:.........:.........:.........:.........: cchhhhpch phhhhh cchp hhhhhh AAAAAXXXX XXXXXX XXXX XXXXXX EDVLAAGEI----------QPPAPP----EDAQ----PVAIPL------- my_fasta_file + ++||++ +++|+ +++ |+ + QIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVT 1WE3_N AAAAAXXXXAAAAAAAAAAXXXXXXBBBBXXXXBBBBXXXXXXBBBAAAA phhcphphcpphhhpphhhcpcphchphphhppchhchhchphhchhchp 451- 500.........dddddddddd:.....dddd:...dddd..:...ddddddd 501- 526.........:.........:...... hhphpchphcpp XXXXXXXXXXXX --------------PVSLGDAGHRSS my_fasta_file + +++ ++ + RSALQNAASIGALILTTEAVVAEKPE 1WE3_N AAAAAAAAAAAAAAAXXXBBBBBXXX cphhpphhphphhhhppchhhhcchc 501- 526dddddddddddddd.....:...... The seq2struc alignment: my_fasta_file ---> 2V93_A align_len=366 ene=-112.00 identity=4.644809 hpc_err=44.808742 size_err=0.000000 ins=0 del=61 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphh hhccchphhhhphpphchhcphhhhhc X BBXXXXXX XXXXXXBBBBBXXXBBBBXXXBBBBBB -M--TWLPLNPI-----------PLKDRVSMIFLQYGQIDVIDGAFVLID my_fasta_file + +| ++ ++ ++ + ++ + +++++ + GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPCKLEEKFPQVAATG 2V93_A XXBBBBXXXXXXAAAAAAAAAAAAAAAXXXBBBBXXXXAAAAAAAAAXXX pchhhhhppccphpphhchpcchcccpphchphchhhchccchhphhhpp 1- 50d.dd.....:..ddddddddddd......:.........:.........: 51- 100.........:.........:.........:.........:.........: cpphcphhhhpp hhhhhhchppchphhhh chhhphpphh hh XXXXBBBBBXXX XBBBBBBXXXXXXAAAA AAAAAXXXBB BB KTGIRTHIPVGS---VACIMLEPGTRVSHAAV---RLAAQVGTLL--VW- my_fasta_file ++++ |+++|+ + +| + + ++++++ + DGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLI 2V93_A XXXXBBXXXXXXAAAAAAXXXXXXXXXXAAAAXXXXAAAAXXXBBXXBBX cphchhhhhhcchpphhppphhhchphcchhpcchhhhphchhchppchh 51- 100.........:..ddd....:.........:..ddd....:.....dd..d 101- 150.........:.........:.........:.........:.........: hpchph chhh ppphpphcpcchhhph chhhcc BXXXXX BBBB XXXXXXXAAAAAAAAA AAAXXA ---VGEAGV-RVYA------SGQPGGARSDKLLYQA--------KLALDE my_fasta_file ++++ + |+ ++ ++ ++++++++++ ++ + + AYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP 2V93_A XXXXXXXXXBBBBBXXXXXXXXXXXXXAAAAAAAAAXXXXBBBXXXXXXA hhhhhhchhphhhpcchhhphhcphcchhhhccchchcpcphhhhphpch 101- 150ddd......d....dddddd.........:......dddddddd.....: 151- 200.........:.........:.........:.........:.........: chchchhcchhc hchp chhhhccphcphcphcppchch AAAAAAAAAAAA AAAX XXAAAAAAAAAAAAAAAAAAAA DLRLKVVRKMFE-----LRFG-------EPAPARRSVEQLRGIEGSRVRA my_fasta_file + + ++++ + + +++ ++ +++ +++++ ++ YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 2V93_A AAAAAAAAAXXXBBBBBXXXXBBBBBBBXXXAAAAAAAAAAAAAAAXXXX hhphhhhhhcpphhhchcppchchcchphcphphchphphhhchhcpchh 151- 200.........:..ddddd..:.ddddddd.:.........:.........: 201- 250.........:.........:.........:.........:.........: phhhhhcphphphppcchchcchccpcphpphhphhp phhhphpchhh AAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAA AAAAAAAAAAA TYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAAT--SCLYGVTEAAI my_fasta_file +++ ++ + | ++ ++ +++++|+++|+ ++ +++ ++ NADTDYCIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQP 2V93_A XXXXXAAAAAAAAAXXXBBBBBBXXXXAAAAAAAXXXBBBBXXXBBXXBB phcpchhhhchhhpcpcphhphpphhhhpphcppchphphphhhphcpph 201- 250.........:.........:.........:.......dd:.........: 251- 300.........:.........:.........:.........:.........: hhhphhhhhphhhppchhphhhchhchh chcphhhchhchhccphpchc AAXXXXXXBBBBBXXXXXXAAAAAAAAA XAAAAAAAAAAAAAXXXXXXX LAAGYAPAIGFVHTGKPLSFVYDIADII-KFDTVVPKAFEIARRNPGEPD my_fasta_file ++ + + +++ +++ |+ + + +++ + ++ | ++ +++++ + SKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL 2V93_A XXXXXXXXXXXXXXXXXXAAAAAAAAAAXXXXAAAAAAAAAAXXXXXXXX pchhhphhphphphhphpcchhcchhcphhhpccphchhpccchhphhhh 251- 300.........:.........:........d:.........:.........: 301- 350.........:.........:.........:.........:.........: cchchhh cchhcppcphhc hhhhhcchhhhpchphhhhhcchphh AAAAAAA AAAAAAAAAAAA AAAAAAAAAAXXXXXXXXXXXXXXXX REVRLAC---RDIFRSSKTLAK--LIPLIEDVLAAGEIQPPAPPEDAQPV my_fasta_file ++ + | + + +| |+|+ +| ++ +++| +| ++ KSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR 2V93_A AAAAAAAXXXAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAAXXX cphccchhcchchhhphcphpcpchhhphhphphhhhhhcphhhphhppc 301- 350.......ddd.........:..dd.....:.........:.........: 351- 366.........:...... hhhhhhphpchphcpp XXXXXXXXXXXXXXXX AIPLPVSLGDAGHRSS my_fasta_file ++ ++ ++ ++ ++ QTVDEALKDAQTRITK 2V93_A XXAAAAAAAAAAAAXX pphcchhcchppchpc 351- 366.........:...... The seq2struc alignment: my_fasta_file ---> 2R6F_A align_len=949 ene=343.00 identity=1.580611 hpc_err=16.543730 size_err=0.000000 ins=0 del=644 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file MDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQ 2R6F_A XXBBBBBBBXXXXXXXBBBBBBXXXBBBBBBXXXXXAAAAAXXXAAAAAA hcchhhcphchhphcphchchhcpchhhhpphppppcpphhhcphhhcpp 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file RRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGT 2R6F_A AAAAXXXXAAAAAAAAXXXXXXBBBBBXXXXBBBBXXXXXXXXXXXXAAA cchhcphphhhcphhpphcchchchhcphphhhphcpcpppcphcpphpp 51- 100dddddddddddddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: hph hhhphh hhccch phh XBB XXXXXX XXXXXX BBB ---------------MTW-------LPLNPI---------PLKDRV-SMI my_fasta_file + + + ++ + + |+ ++| VTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQMVDRLLSYPERTKMQI 2R6F_A AXXAAAAAAAAAAAXXBBXXXXXXXXXXXXXAAAAAAAAAXXXXXXBBBB hpchhchhchhhhchpchhhhphphchpppphcphhcchhphhccpchph 101- 150ddddddddddddddd...ddddddd....:.ddddddddd......d..: 151- 200.........:.........:.........:.........:.........: hhphp phch hcphhhhhc cpph cph BBXXX BBBB XXXBBBBBB XXXX BBB FLQYG---QIDV-------------------IDGAFVLID-KTGI-RTH- my_fasta_file + + + ++ + ++++ + + ++ LAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSI 2R6F_A BBXXXBBBBBBBXXXXXAAAAAAAAAAAAAAXXXBBBBBBXXXXXBBBBX hhhhhppccpphhcphcchccpphhchchccchcchppchchccpcchph 151- 200.....ddd.:..ddddddddddddddddddd........:d....d...d 201- 250.........:.........:.........:.........:.........: hh hpph h hhhhc BB XXXX B BBBBB -IP--VGSV--A-----------------------CIMLE---------- my_fasta_file +++ + |++ DVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHAC 2R6F_A XBBXXXXXXBBBXXXXXXXXXXXXXXXXXXXXXXXBBBBBXAAAAXXXXX chhhcchhhccphhhchhcphcphhchhcpchhhchhpcpchhhpcchhh 201- 250d..dd....dd.ddddddddddddddddddddddd....:dddddddddd 251- 300.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file PYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLK 2R6F_A XXXXXXXXXXXXXXAAAAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAXXX hhhphphpchchchhphpphhphhhchcphphchchchchhhhpcchphc 251- 300dddddddddddddddddddddddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: hppchp hhhh chhhphpphh XXXXXX AAAA AAAAAXXXBB ------------------PGTRVS-------HAAV-----RLAAQVGTLL my_fasta_file ++ + |+++ + ++ EHAIAPWEPQSSQYYPQLLEAVCRHYGIPMDVPVKDLPKEQLDKILYGSG 2R6F_A XXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAXXXXXAAAAAXXXBB chhhhhhchpppphhhphhchhhchhphhhchhhcchhccphcchhhppp 301- 350dddddddddddddddddd.:....ddddddd....ddddd.........: 351- 400.........:.........:.........:.........:.........: hhh pchphchhhppph pph cpcchh hph BBB XXXXXBBBBXXXX XXX AAAAAA AAA VWV---------GEAGVRVYASGQP-----GGA----RSDKLL----YQA my_fasta_file ++ | + |+ ++++ |+| GEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMA 2R6F_A BBBXXXXXXXXXXXXXXXBBXXXXXAAAAAXXXAAAAAAAAAAXXXXAAA pchhhhchppchpphccphhhhcphhhphccchccpppchhccphcchhh 351- 400...ddddddddd.......:.....ddddd...dddd..:...dddd..: 401- 450.........:.........:.........:.........:.........: chhhccchchchhcchhchch pch hhhccp AAAXXAAAAAAAAAAAAAAAA XXX AAAAAA KLALDEDLRLKVVRKMFELRF------------GEP-------APARRS- my_fasta_file + + ++ + + + + + + + EQPCPTCQGYRLKKESLAVLVGGKHIGEVTAMSVTEALAFFDGLELTEKE 2R6F_A AAAXAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAAAAAAAX cphhhphpphchcccphhhhhppchhpchphhphpchhhhhcphchpccc 401- 450.........:.........:.dddddddddddd...ddddddd......d 451- 500.........:.........:.........:.........:.........: hcphcphcppch chphh AAAAAAAAAAAA AAAAA ---------------------VEQLRGIEGSRV------------RATYA my_fasta_file ++ + |++ ++ + AQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIG 2R6F_A XXXXXXBBBBBXXXXXXXXXXAAAAAAAAAAAAXXXXBBBBBXXXAAAAA hphhchhhcchccchphhpphphchhphpcphpphpppchpchchhpphp 451- 500ddddddddddddddddddddd........:...dddddddddddd....: 501- 550.........:.........:.........:.........:.........: hhhcp AAAAA ------------------------------------LLAKQ--------- my_fasta_file ++ ++ SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML 2R6F_A XXXBBBBBXXXXXXXXXXBBBBBXXXXXXXXXXXXXAAAAAXXXXXXXXX pchpphhhhhcchphphhpccpcchhhphcphcchppphhhhchcccphh 501- 550dddddddddddddddddddddddddddddddddddd...:.ddddddddd 551- 600.........:.........:.........:.........:.........: hphph ppc chchcchc cpc XXXXX XXX XXXXXXXX XXX -----------------YGVTW------NGR---RYDPKDWE-----KGD my_fasta_file ++|+ + ++ ++++ +++ AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPA 2R6F_A XXXXXXXXBBBBBBBXXXXXXXBBBBBBXXXBBBXXXXXXXXAAAAAXXX hhchhhchphphphhppchhhhpphcchhpchpphppphhppcchhhhhh 551- 600ddddddddddddddddd..:..dddddd.:.ddd.....:..ddddd..: 601- 650.........:.........:.........:.........:.........: php phhp AAA AAAA -------TIN------------------------------------QCIS my_fasta_file + ++++ ERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 2R6F_A AAAAAAAAAAXXXXXXXXXXBBBXXXXXXBBBBBXXXXXXXXXXXXAAAA cccchcpchhchhphcchphcphphchhhpphhhhpphppppcpphhpch 601- 650ddddddd..:dddddddddddddddddddddddddddddddddddd...: 651- 700.........:.........:.........:.........:.........: h hpphhhphpc hhhhh hphhhh h A AAAAAAAAAA AAAAA XXXXXX B A-ATSCLYGVTE--AAILA------------------AGYAPA---I--- my_fasta_file +++ +++ + + ++ ++++ LYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATY 2R6F_A AXAAAAAAAAAAXXAAAAAXXXXXXXXXXXXXXXXXXXXXXXXBBBBXXX hhchhhpchhchchchpchcchcphchhcchhchcpphhpcphcpphhph 651- 700.d.......:..dd.....dddddddddddddddddd..:...ddd.ddd 701- 750.........:.........:.........:.........:.........: phhh ppchhp hh hchhchh ch BBBB XXXXXX AA AAAAAAA XA ----GFVH----------------TGKPLS---FV---YDIADII---KF my_fasta_file + + ++ ++ +++ || + TGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMH 2R6F_A XXXXBBBBXXXXXXXXXXXXXXXXXXXXXXAAAAAXXXAAAAAAAXXXXA pphhcchcchhhpppchchcphccpchphphcppchchhhpcphhchchh 701- 750dddd....dddddddddddddddd.....:ddd..ddd.:.....ddd.: 751- 800.........:.........:.........:.........:.........: cphhhchhchh ccphpchc cchchhhcc AAAAAAAAAAA AXXXXXXX AAAAAAAAA DTVVPKAFEIA--------RRNPGEPD----REVRLACRD---------- my_fasta_file ++ + + ++ +++ +||++ ++ FLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP 2R6F_A AAAAAAAAAAAXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXBBB hhhchhhhhchhhpcchpccphchphcpcphhchhchphcchhchhhphh 751- 800.........:.dddddddd:.......dddd........:dddddddddd 801- 850.........:.........:.........:.........:.........: hhcppcphhchhhhhc chhh AAAAAAAAAAAAAAAA AAAA ----------IFRSSKTLAKLIPLIE-----------DVLA--------- my_fasta_file + + +++ + +++ ++| KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 2R6F_A BBBXXXXXXXAAAAAAAAAAAAAAAAXXXBBBBBXXXAAAAXXXXBBBBB chccchcphhchphphhchpphhpphpppchpchchhhchhccpppcphh 801- 850dddddddddd.........:......ddddddddddd..:.ddddddddd 851- 900.........:.........:.........:.........:.........: hpc h phhhh hc XXX X XXXXX XX -------AGE-----I-----QPPAP---------------------PE- my_fasta_file +++ + ++ + ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 2R6F_A XXXXXXXXXXBBBBBXAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAAXXB hhcchppphhhcchhchhchhhchhcppcphhhhchphchhcphchhhch 851- 900ddddddd..:ddddd.ddddd.....ddddddddddddddddddddd..d 901- 949.........:.........:.........:.........:......... chphhhhhh hh phpchp hc pp XXXXXXXXX XX XXXXXX XX XX DAQPVAIPL-----PV------SLGDAG---------HR--------SS my_fasta_file ++++++ ++ ++ + + GPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKPILERDRARMQARYEA 2R6F_A XXXXXXXXXBBBBBXXAAAAAAXXXXXXAAAAAAAAAXXAAAAAAAAXX phcppccppphhhhpphcchhchccphppchhchhhcccchchphchch 901- 949.........ddddd..dddddd......ddddddddd..dddddddd.. The seq2struc alignment: my_fasta_file ---> 1Z3H_B align_len=958 ene=390.00 identity=1.565762 hpc_err=16.597077 size_err=0.000000 ins=0 del=653 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SDLETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPL 1Z3H_B XAAAAAAAAAAAAAXXXXAAAAAAAAAAAAXXXXAAAAAAAAAAXXXXXA pchcphhchhhcphhhpphcppccphcphcppcphphphhhhhhppphhh 1- 50dddddddddddddddddddddddddddddddddddddddddddddddddd 51- 100.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file STRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNL 1Z3H_B AAAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAAAAAAAAXXAAA ppchhphhhhcphhccchhccppphhhhhpphchhccchhhhhhphhpph 51- 100dddddddddddddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: hphhh hphhhh XBBXX XXXXXX ----------------MTWLP--------LNPIPL--------------- my_fasta_file + | ++++++ QVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 1Z3H_B AAAAAAAAAAAAAAXXXXXXXAAAAAAAAXXXXXXAAAAAAAAAAAAAAA phphpchhpphhcpchhcchhphhpchhpchppcchhppcphhphhhphh 101- 150dddddddddddddddd...:.dddddddd:.....ddddddddddddddd 151- 200.........:.........:.........:.........:.........: ccchphhh hphp XXXXBBBB BXXX KDRVSMIF-----------------------------LQYG--------- my_fasta_file | +++ + KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 1Z3H_B XXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAA cchchhhcpcchhhchchhhchhphhhhphhcphccphphpcppchphph 151- 200........ddddddddddddddddddddddddddddd..:.ddddddddd 201- 250.........:.........:.........:.........:.........: phchhc p hhhhhccpphcph BBBBXX X BBBBBBXXXXBBB ------------QIDVID-----G-------------AFVLIDKTGIRTH my_fasta_file ++++ + + + ++++ ++ LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD 1Z3H_B AAAAAAAAAAAAXXXXXXAAAAAXAAAAAAAAAAAAAXXXXXXXXXXXXX hhchhhhhhchhhchphpchhchhccphphphphhhchhphpphhhcchc 201- 250dddddddddddd......ddddd.ddddddddddddd..:.........: 251- 300.........:.........:.........:.........:.........: hhh pphhhh hhchppch BBX XXXBBB BBBXXXXX IPV------------------GSVACI---------------MLEPGTRV my_fasta_file +++ + ++ + +|++ + + ETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISN 1Z3H_B XXXAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAAAAAXXXXXXXX cpchhphhhchcpphpchhphhppchcchhphhhpchhphphphhpphpp 251- 300...dddddddddddddddddd......ddddddddddddddd.......: 301- 350.........:.........:.........:.........:.........: p hhhhc hhhp hpphhh h hpc X AAAAA AAAA XXXBBB B BXX S----------HAAVR--LAAQ-VGTLLV--------W-----VGE---- my_fasta_file + ++ + + + + + QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLRE 1Z3H_B XAAAAAAAAAAAAAAAXXAAAAXXXXXXXAAAAAAAAXAAAAAXXXAAAA phchchhhpcphphhphhpchhchhchhppcphhpphpcphhhhphphcc 301- 350.dddddddddd.....dd.:..d......dddddddd.ddddd...dddd 351- 400.........:.........:.........:.........:.........: h phchhhpp X XXBBBBXX -----A--------GVRVYASG---------------------------- my_fasta_file + ++| EDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFL 1Z3H_B AAAAAXAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA cchchhccchhchhccchcppcpcpccchhpchhcchcccpchhhpphhh 351- 400ddddd.dddddddd.....:..dddddddddddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: phpph cpcch hhp XXXXX AAAAA AAA ---------QPGGA----------RSDKL------------------LYQ my_fasta_file + +++++ | AHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 1Z3H_B AAAAAAAAAXXXXXAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXAAA hhhcphhcphhpchpcphchcchhhhhhphhhhppphpphphppppphhp 401- 450ddddddddd:....dddddddddd.....dddddddddddddddddd..: 451- 500.........:.........:.........:.........:.........: hchh hc cc hchchhcchhchch AAAA XX AA AAAAAAAAAAAAAA AKLA-----------LD------------ED-----LRLKVVRKMFELRF my_fasta_file ++ + ++ +++| ++++ + + VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPIL 1Z3H_B AAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAA hhchhpcchhhchpppphhhhhhchchhchhhphcpphpchphhchhhhh 451- 500....ddddddddddd..dddddddddddd:.ddddd...:.........: 501- 550.........:.........:.........:.........:.........: pch hh hccphcphcphcp pchc XXX AA AAAAAAAAAAAAA AAAA --GEP-------------AP---ARRSVEQLRGIEG----------SRVR my_fasta_file +++ + ++| + +++ ++ ++ ATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK 1Z3H_B XXXXXAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAXXXXXXXXXXAAAA hphhppcchhhhphhhhphcchhphccpppphhhhhhccchppppchhhc 501- 550dd...ddddddddddddd.:ddd......:......dddddddddd...: 551- 600.........:.........:.........:.........:.........: hphhhhhcp hp hphpp AAAAAAAAA XX XXXXX ATYALLAKQ-------YG---------------VTWNG------------ my_fasta_file ++ || |+ + ++ NLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIE 1Z3H_B AAAAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAA phhhhhhchppphcchhcpchhhcphhchhpppccphphhhhphhhphhc 551- 600.........ddddddd..ddddddddddddddd.....dddddddddddd 601- 650.........:.........:.........:.........:.........: cchchc chccpc phpphh XXXXXX XXXXXX AAAAAA -----RRYDPK--------------DWEKGD-------TINQCI------ my_fasta_file + +++ +++ +++ + IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFS 1Z3H_B AAAAAXXXXXXAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAAAAXXXXXX hhphhhcphpphchphhphcphphhhphppcpphhhhhcphhhphhphhp 601- 650ddddd....:.dddddddddddddd....:.ddddddd.:....dddddd 651- 700.........:.........:.........:.........:.........: phhp phhhphpchhhhh hphhhhh AAAA AAAAAAAAAAAAA XXXXXXB ------SAAT-----------SCLYGVTEAAILA-AGYAPAI-------- my_fasta_file + + ++ ++ + + + + EDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAV 1Z3H_B XXXXXXAAAAXXXXXXXXXXXAAAAAAAAAAAAAXXXXXXXXAAAAAAAA cchpchhhhhhphhhhhhcpphphhcphchhhphhhhhphhchcpphhhh 651- 700dddddd...:ddddddddddd........:....d....:..dddddddd 701- 750.........:.........:.........:.........:.........: phhh ppc hhp hhhchhchh c BBBB XXX XXX AAAAAAAAA X -----GFVH-------------TGK----PLS-----FVYDIADII--K- my_fasta_file | + ++ + + ++ ++| + TRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLID 1Z3H_B AAAAAXXXXAAAAAAAAAAAAAXXXAAAAXXXAAAAAAAAAAAAAAXXXA pchhcphhcpcpphhhchhhhhphhpchhhpchhchhphchhchhhhhhc 701- 750ddddd....ddddddddddddd...dddd:..ddddd..:......dd.d 751- 800.........:.........:.........:.........:.........: hcph hhchhchhc c phpch AAAA AAAAAAAAA X XXXXX -------------FDTV-VPKAFEIAR-----R------------NPGEP my_fasta_file +++ + ++ +++ + + ++ MNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHF 1Z3H_B AAAAAAAAAAAAAAAAAXAAAAAAAAAXXXXXXAAAAAAAAAAAAXXXXX hpchchhhcphhhhhhpchpppcpcchhcchphhhphhppchppchhhhh 751- 800ddddddddddddd....d.:.......ddddd.dddddddddddd....: 801- 850.........:.........:.........:.........:.........: ccchchhhcchhcppc phhchhhhhcchhh XAAAAAAAAAAAAAAA AAAAAAAAAAAAAA DREVRLACRDIFRSSK-----------TLAKLIPLIEDVLA--------- my_fasta_file + || ++ + + + + +++| ++++ IDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSK 1Z3H_B XAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXXX hcchpcphhpphhpphhhpphhphpphhccchhhhphhphhhppphhppc 801- 850.........:......ddddddddddd..:.........:.ddddddddd 851- 900.........:.........:.........:.........:.........: hpchphhhhhc c hph hhhh XXXXXXXXXXX X XXX XXXX ------------AGEIQPPAPPE----------D----AQP-----VAIP my_fasta_file +++ + +++ + YPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSI 1Z3H_B XXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAXAAAAXXXAAAAAXXXX hhphhppphpphhcphpppphhphcpchhchcphcchpphpphhpchhph 851- 900dddddddddddd.......:...dddddddddd.dddd.:.ddddd...: 901- 950.........:.........:.........:.........:.........: h hhp hpchp hcp X XXX XXXXX XXX L------------PVS--------------LGDAG-------HRS----- my_fasta_file + ++ + ++ SEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQV 1Z3H_B XAAAAAAAAAAAAXXXAAAAAAAAAAAAAAXXXXXAAAAAAAXXXAAAAA pcchhchhhchchppphchhhhchhpchphhpppphhpphhhphppcpph 901- 950.dddddddddddd...dddddddddddddd.....ddddddd...ddddd 951- 958........ p X -------S my_fasta_file KLNQLLVG 1Z3H_B AAAAAAAX chpphhhp 951- 958ddddddd. The seq2struc alignment: my_fasta_file ---> 3DDN_A align_len=527 ene=-13.00 identity=4.554080 hpc_err=28.652751 size_err=0.000000 ins=0 del=222 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhhccchphhhhphpph chhcphhhh X BB XXXXXXXXXXXXBBBBBXXXBB BBXXXBBBB --M--TW---LPLNPIPLKDRVSMIFLQYGQI-------DVIDGAFVL-- my_fasta_file + | + + +++ + ++|++ + ++ | SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRS 3DDN_A XXXBBBBXXXXXXXXXXXXXXXXBBBBXXXXXAAAAAAAXXXXXBBBBXX phhhhhhhcchhhpphhhhpcphchchhcphcccchhhhhhchchhhhcp 1- 50dd.dd..ddd.........:.........:..ddddddd:........dd 51- 100.........:.........:.........:.........:.........: h ccpphcphh hhpph hhhhhchppchp B BXXXXBBBB BXXXX BBBBBBXXXXXX ----I------DKTGIRTHI----PVGSV------ACIMLEPGTRVS--- my_fasta_file + ++ ++++ + + ++ ++ ++++ + ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHS 3DDN_A XXXXXAAAAAAXXXXXBBBBXXXXXXXXXAAAAAAXXXBBBXXXXXXAAA hpphchchhhhhhchchhhchphphcphchchhphcphhhhphhppphhp 51- 100dddd.dddddd........:dddd.....dddddd....:.......ddd 101- 150.........:.........:.........:.........:.........: hhhhchhhphp phhhhhpchphchhhpp phpphc AAAAAAAAAXX XBBBBBXXXXXBBBBXX XXXXXA ----HAAVRLAAQVG---------TLLVWVGEAGVRVYASG---QPGGAR my_fasta_file | +||| + + ++ + + + |++| AAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGR 3DDN_A AAAAAAAAAAAAAXXAAAAAAAAAXXXXXXXXXXXXXXXXXBBBBBXXXA hhchhhhhhhhhpcphhhhchphcchphccpphpppchhpcphphhphpc 101- 150dddd.....:.....ddddddddd.....:.........:.ddd.....: 151- 200.........:.........:.........:.........:.........: pcchhhphch hhccchchc hhcchhc AAAAAAAAAA AXXAAAAAA AAAAAAA SDKLLYQAKL-----------ALDEDLRLK-------VVRKMFE------ my_fasta_file + | |++ ++++ + + IGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISV 3DDN_A AAAAAAAAAAXXXXBBBBBXXXXXAAAAAAXXXBBXXAAAAAAAXXBBBB hpphhhpchhhhphhhhhhchhhphhchhphphchhphcchhhchchhph 151- 200.........:ddddddddddd........:ddddddd..:....dddddd 201- 250.........:.........:.........:.........:.........: hchpchhhhc cphcphcphcppchchph AAAXXXAAAA AAAAAAAAAAAAAAAAAA -------LRFGEPAPAR-------------RSVEQLRGIEGSRVRATY-- my_fasta_file ++++++++|+ | ++++ + ++ + + HLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR 3DDN_A XXXXXXXXXXXXXAAAAXXXXXXBBBBBXXXXXXXXAAAAAAAAAXXXBB hhhcphcphphhccchhhcpchphhhhphhcpphhcchhhhchhppphhc 201- 250ddddddd..:.......ddddddddddddd.........:........dd 251- 300.........:.........:.........:.........:.........: hhhhcphphphppcchch cchccpcphpphhphhpphhhphpc AAAAAAXXXXXXXXXXXX XXXXXXXAAAAAAAAAAAAAAAAAA ----ALLAKQYGVTWNGRRYDP---KDWEKGDTINQCISAATSCLYGVTE my_fasta_file + | ++ ++++ ++ + + + | +++ |+| + | + AAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRL 3DDN_A BBBBXXXXXXXXXXXXXXXXXXBBBXXXXXXXXAAAAAAAAAAAAAAAAA hhphchhhpchhpcphhhchhphhhphhhphpphchpcchppchhcphch 251- 300dddd.....:.........:..ddd....:.........:.........: 301- 350.........:.........:.........:.........:.........: hhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA AAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR----- my_fasta_file | ++ + + +++++++ +++ ++ +++++++ + +++| + ALAGEFVPDAVNVGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQ 3DDN_A AAXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXBBBBB hhhpchhhchhphppphhpcchhhhhchhcchphhhphhpcchhhphphp 301- 350.........:.........:.........:.........:.....ddddd 351- 400.........:.........:.........:.........:.........: cphpchccchchhhcchh cppcphhc XXXXXXXAAAAAAAAAAA AAAAAAAA ---RNPGEPDREVRLACRDIF-------------RSSKTLAK-------- my_fasta_file + +|++ + ||+ + + +++++ + VRGELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICK 3DDN_A BBBXXXXXXXAAAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAXXBBBBBB hcpchhhcchchhchphhcphhphhhcchhphhphhhhhhccphphchhc 351- 400ddd......:.........:.ddddddddddddd.....:..dddddddd 401- 450.........:.........:.........:.........:.........: hhhhh cchhh hpch ph h AAAAA AAAAA XXXX XX X ---LIPLI--------EDVLA---------AGEI-------QP------P my_fasta_file + + + ++++ ++ + ASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRA 3DDN_A BXXXXXXXBBBBBBBBXXXXXBBBBBBBBBXXXXBBBBBBBXXBBBBBBX hpcphphcphhchchhphcpphhphppphhphphppchhphppchhchch 401- 450ddd.....dddddddd...:.ddddddddd....ddddddd..dddddd: 451- 500.........:.........:.........:.........:.........: hh hcchp hhhh hhhhph XX XXXXX XXXX XXXXXX AP-------PEDAQ-----------PVAI--------PLPVSL------- my_fasta_file ++ + + + ++++ QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL 3DDN_A XXBBBBBBBXXXXXAAAAAAAAAAAXXXXBBBBBBBBXXXXXXBBBBBBB pphphhhhhhcchphhpchpphhpphphphphhphpcchcphphphhhch 451- 500..ddddddd:....ddddddddddd....dddddddd..:...ddddddd 501- 527.........:.........:....... pchph c pp XXXXX X XX GDAGH-----------R--------SS my_fasta_file ++ +| DQDVPDDVRTAIAAAVDAYKLEVVDLS 3DDN_A XXXXXAAAAAAAAAAAXBBBBBBBBXX cpchhcchcphhhhhhchhchchhchp 501- 527.....ddddddddddd.dddddddd.. The seq2struc alignment: my_fasta_file ---> 2JJ4_B align_len=323 ene=-89.00 identity=7.430340 hpc_err=39.009288 size_err=0.000000 ins=39 del=18 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:.........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + + + + + ++|+ + + | A--GAADRVRILSEA-----LPY----LQQ------FAGRTVVVKYGGA- 2JJ4_B X XXXXAAAAAAXX AAA AAA XXXXBBBBBBXXA h phhcchchhpch hhh hpp hhpcphhhchpph 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iiiii.:.......iii....iiii.: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++ + +++|++ ++ | | +|+ + -----AMKQEELKEAVMRDIVFL-----ACVGMRPVV---VHGG----GP 2JJ4_B AAAXAAAAAAAAAAAAAA AAAXXBBBB BBXX AA hhcpcchcchhhcchhhh hhhphchhh hhpp ph 51- 100.........:.........:.........:.........:.........: 101- 150........iiii.......:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++++ + ++ ++++ +|+++ +||+ +++ + ++ + EINAWLGR----VGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRI 2JJ4_B AAAAAAXX XXXXXXBBXXBBXXXAAAAAAAAAAAAAXXAAAAAAAA chphhhpc hphchphhpphchpchcphchhchhhhpchpcchhpch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +++ ++| +| + ++ ++| + ++ ++++ + + ++++ |++|| NTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGY 2JJ4_B AAAXXXBBBBBXXXXXXBBBBBXXXXXXXXBBBBBBBXXXXAAAAAAXXX pppppchhphhppcpchhhhchhcpcphphhpchpphppchhchhhccph 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhp hhhppchh p hhhchhchh chc phhhchhchh XXXBB BBBXXXXX X AAAAAAAAA XAA AAAAAAAAAA APAIG-FVHTGKPL----S--FVYDIADII-KFD------TVVPKAFEIA my_fasta_file | | ++ +| + + ++++ + + IPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPK 2JJ4_B BBBBBXBBBXXXXXBBBBXAAAAAAAAAAAXXXXBBBBBBXXXXXXXXXX hhhhpphhhccpppphphphcphhpchhhhhphcchhhhpcpcphhcchc 201- 250.....d...:....dddd.dd........:d...dddddd.........: 251- 300.........:.........:.........:.........:.........: ccphpch ccchchhhcchhcppcphhchhhhhcchhhhpch phhhh AXXXXXX XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX XXXXX RRNPGEP--DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEI--QPPAP my_fasta_file |+ +++| +++ ++ ++++++ ++ + + +||+|++ + ++ RPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDG 2JJ4_B XXXXXXXBBXAAAAAAAAAXXXXXXXXAAAAAAAAAAAAXXXXBBBBBBX chcphhhchphhppcchhhpphhppphhhchchhhcphhpphchhhhhcp 251- 300.......dd:.........:.........:.........:...dd....: 301- 323.........:.........:... hcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXX PEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++ + + +++++ ++ + | RIPHALLLEIFTDAGIGTMIVGS 2JJ4_B XXXXAAAAAAAXXXXXBBBBXXX chhhhhhhchhpchphpphhhpp 301- 323.........:.........:... The seq2struc alignment: my_fasta_file ---> 1N4K_A align_len=367 ene=-154.00 identity=4.904632 hpc_err=41.144413 size_err=0.000000 ins=0 del=62 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhp hhhhccchphhhh php phc X BBXXXX XXXXXXXXBBBBB XXX BBB --M----TWLPLN----PIPLKDRVSMIFL-------------QYG-QID my_fasta_file + + ++ ++ ++ + + GGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVE 1N4K_A XXXBBBBBBXXXXBBBBBBBXXXXBBBBBBXXXXXXXXXXXXXXXXBBBB ppchhchhhhcpcchhphcchcccphhhhcpppcpphpphpppchhhchc 1- 50dd.dddd..:...dddd..:.........:ddddddddddddd...d..: 51- 100.........:.........:.........:.........:.........: hhcphhhhhccpphcphhhhpphhhhhhchppchphhh hch h BXXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAA AAA A VIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAA----VRL----A my_fasta_file | ++ ++ + + + + |++ + + ++++ + +++ VVQHDPCRGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDP 1N4K_A BXXXBBBBBXXXXXBBBBBBXXXBBBBBBXXXXXXXXXBBBBXXXBBBBX hhphchhcpphphhpphhchchhhpphhhhhchchchccchhchphphch 51- 100.........:.........:.........:........dddd...dddd: 101- 150.........:.........:.........:.........:.........: hph pphhhhh pchph chhhppphpphc pcchhhphc AAX XXBBBBB XXXXX BBBBXXXXXXXA AAAAAAAAA AQV--GTLLVWV----GEAGV---RVYASGQPGGAR-----SDKLLYQAK my_fasta_file +|+ +|++ ++++| ++++ + +| ++ DQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPRN 1N4K_A XXXBBBBBBBBBXXXXXXXXXBBBBBBBXXXXXXXXBBBBBXXAAAAAAA cpchpcpchcphpcchhhphhphhcppchpphhchchpphcppcphhhcp 101- 150...dd....:..dddd...:.ddd.....:......ddddd........: 151- 200.........:.........:.........:.........:.........: hhhccchchchhcchhchchpchhhhccphcphcphcppchchphhhhhc AAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAA LALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAK my_fasta_file + + + ++++ + ++ + ++++ ++ + +++ + ++ | + SYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPV 1N4K_A AAAAAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAXXXXXXXXX phhchchhhppphhhppphhhcccccchhhhchppphhccccchhhhhhh 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: phphphppcc hchcchccpcphpphhphhp phhhphpchhhhhh AXXXXXXXXX XXXXXXXXXXAAAAAAAAAA AAAAAAAAAAAAAX QYGVTWNGRR-YDPKDWEKGDTINQCISAAT-----SCLYGVTEAAILAA my_fasta_file ++++ + + +| + +++ +++ + | | +++ + SPAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVT 1N4K_A XXXXXXXXXXAAAAAAAAAXXAAAAAAAAAAXXXXXAAAAAAAAAAAAAA phhchcchchhpchpchhpphhpchccpphpppcccphpchhcchhhhhp 201- 250.........:d........:.........:.ddddd...:.........: 251- 300.........:.........:.........:.........:.........: phhhhhphhhppchhphhhchhchh chcphhhchhch hccphpc XXXXXBBBBBXXXXXXAAAAAAAAA XAAAAAAAAAAA AAXXXXX GYAPAIGFVHTGKPLSFVYDIADII--KFDTVVPKAFEI----ARRNPGE my_fasta_file |+++++ +| ++ + ++ ++ +++++ ++ ++ ++ +++ GGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGPM 1N4K_A AAAAXXXAAAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAXXXXXXXXXXX pppppppchhchhhpchpcccpchhccpphhcphhchhphhhpchpcphh 251- 300.........:.........:.....dd..:.........dddd......: 301- 350.........:.........:.........:.........:.........: hccchc hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchph XXAAAA AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXX PDREVR----LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQP my_fasta_file +|++ | + + ++++ ++ +++ +++++ +|+++ + + +| LRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQI 1N4K_A XXAAAAXXXXXAAAAAAAAAAAAAAAAAAAAXAAAAAAAAAAAAAAAAAX hchcchpcpchhhhchhhchhhchhchpppchccppchhhcphphhpcph 301- 350......dddd.........:.........:.........:.........: 351- 367.........:....... hhhhhhhphpchphcpp XXXXXXXXXXXXXXXXX VAIPLPVSLGDAGHRSS my_fasta_file + + | + ++ |+ + GYDVLAEDTITALLHNN 1N4K_A XXXXXAAAAAAAAAAXX phchhhccphphhhhpp 351- 367.........:....... The seq2struc alignment: my_fasta_file ---> 1U58_A align_len=308 ene=-17.00 identity=5.194805 hpc_err=37.662336 size_err=0.000000 ins=73 del=3 begin1=0 begin2=0 1- 50iiiiiiiiiiiiiiiiiiii.......iii.........:i....iiii: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +|+++ + | |++ |++ --------------------ESGLRYA---YTLVVDGTAN-TRRC----F 1U58_A XXXBBBB BBBBBBXXXX BBBB B cpphchh hphhhcpphp pcch h 1- 50.........:.........:.........:.........:.........: 51- 100.....iiiiiiiiiiiiiiii.......i:.......i.:....iiiii: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ + + + ++ + + + + ++++ GTGHV----------------DGEAFVG-YSNNKTHG-IGRWVN-----A 1U58_A BBBBB XXBBBBB BBXXBBBB XXXXXX A ppphh cpchhhp hpppcphp hpchhp h 51- 100.........:.........:.........:.........:.........: 101- 150......ii.:.........:.......iiiiiiiiiiiii.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ ++ ++ + +++++ ++ | |+++++ SHVEEE--NKEFVRQCKELQAELDKMQ-------------NNSKVIGVKT 1U58_A AAAAAA AAAAAAAAAAAAAAAAXXX XXXXXXXXXB phhccc pcchhcphcchphchcchp pppchhphcp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpc hhhhh AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAA AAAAA LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTE---AAILA my_fasta_file + ++++ ++ +|+ +| | ++ + |++ + + ++ + || VQLDVGCTSKIEKHYAYDGNETEDDTATSASERDRDCQKKLTEYRKLVLA 1U58_A BBBBBBBXXXBBBBBBBXXBBBXXAAAAAAAAAAAXXXXXXXBBBBBBBB hphchphppchcchhhhcppcpcccphpphpccccchpcchpchcchhhh 151- 200.........:.........:.........:.........:..ddd....: 201- 250.........:.......iiiiiii.....:.........:.........: hphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccch XXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAA AGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREV my_fasta_file ++ +|+ ++ ++ +++++ + + | + + + SAVSPQLEVERRSSGRE-------GGMRLRCFARDYYPADLEIRWWKDDG 1U58_A XXXXXXBBBBBBBBBBX XXXBBBBBBBBXXXXXBBBXXXXXXX phhphphchcccpppcc pphchchhhcchhhhchchchhcccp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: chhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhph AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX RLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSL my_fasta_file ++ ++++ +++ + ++++++++ + ++++ +++ + ++ + | GGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIATGL 1U58_A XXBBXXXXXBBBBBBBBBXXXXXXXBBBBBBBXXXXXXXBBBXXXXXXXX ppphhhpppcphhchhhpppphhpchhchhhcpphchhhphchcphhpph 251- 300.........:.........:.........:.........:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file +++ |+ ELQIVRWK 1U58_A BBBBBBXX chphhchc 301- 308........ The seq2struc alignment: my_fasta_file ---> 2JG7_F align_len=509 ene=-48.00 identity=4.518664 hpc_err=29.469547 size_err=0.000000 ins=0 del=204 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpph cph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXX BBB -----MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGI--RTH my_fasta_file + + ++ ++| + + + + ++| ++ ++ +++ + +++ SGLLINQPKYSWLKELGLSEDNPGVYNGSWGGSGEVITSYCPANNEPIAR 2JG7_F XXXXXXXXXXXXXXXXXXXXBBBXBBXXXBBXXXXBBBBBBXXXXBBBBB pphhhpphchphhcchphpccphphhppphppppchhpphhhhppchhhc 1- 50ddddd....:.........:.........:.........:.....dd..: 51- 100.........:.........:.........:.........:.........: hhhpp hhhh h BBXXX XBBB B IPVGS------------------VACI-----------------M----- my_fasta_file +++ + + VTQATLAEYEETVQKTREAWKMWADIPAPKRGEIVRQIGDALRKKIKVLG 2JG7_F BBXXXAAAAAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAXAAAAA hpphphhchccphpcpcchhchhhchhhhccpchhcphpchhccchchhp 51- 100.....dddddddddddddddddd....ddddddddddddddddd.ddddd 101- 150.........:.........:.........:.........:.........: hch ppchphhhhchhhp hpp hh BBX XXXXXAAAAAAAAA XXX BB -------LEP-------GTRVSHAAVRLAAQ------------VGT--LL my_fasta_file + + ++ ++ ++ ++ | SLVSLEMGKIYVEGVGEVQEYVDVCDYAVGLSRMIGGPVLPSERPGHALI 2JG7_F AAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAXXXXXXXBBXXXXXXBBBB phhphchpchhhcphpchpchhchhchhhphpchhpphhhhpcchphhhh 101- 150ddddddd..:ddddddd..:.........:.dddddddddddd...dd.: 151- 200.........:.........:.........:.........:.........: hhhpchphchhhppphpphcpcchhhphchh hc cchch BBBXXXXXBBBBXXXXXXXAAAAAAAAAAAA XX AAAAA VWVGEAGVRVYASGQPGGARSDKLLYQAKLA-----------LD-EDLRL my_fasta_file ++ + | ++ +++++ +++ +++ +|+ + + ++ EQWNPVGLVGIITAFNFPVAVYGWNNAIALTCGNVCLWKGAPTTPLTSVA 2JG7_F BBBBBXXBBBBBXXXXXXXAAAAAAAAAAAAXXXBBBBBXXXXXAAAAAA cphphhphhphhphhphhhhhhphpphhhhphpphhhhcphhpphhpphh 151- 200.........:.........:.........:.ddddddddddd..d....: 201- 250.........:.........:.........:.........:.........: chhcchhchch pchhhhccphcp hcph cppchc AAAAAAAAAAA XXXAAAAAAAAA AAAA AAAAAA KVVRKMFELRF-----------GEPAPARRSVEQ-LRGI-----EGSRVR my_fasta_file +++++ ++| + + +|+ + + +|++ +| VTKIVAEVLEQNNLPGAICSMTCGGADIGTAMAKDERVDLLSFTGSTHVG 2JG7_F AAAAAAAAAAAXXXXXXXBBBBXXXAAAAAAAAAXXXXXBBBBBXXAAAA hpchhhchhcppphhphhhphphpphchpphhhcccchchhphpppphhp 201- 250.........:.ddddddddddd.......:....d....ddddd.....: 251- 300.........:.........:.........:.........:.........: hphhhhhcphph phppcchchcchccpcphpphhphhpp AAAAAAAAAXXX XXXXXXXXXXXXXXXXAAAAAAAAAAA ATYALLAKQYGV-----TWNGRRYDPKDWEKGDTINQCISAATS------ my_fasta_file ++ | +++ ++ + + + ++ + + +++ + | + KMVAMMVQERFGRKLLELGGNNAIIVFEDADLNLVVPSAVFASVGTAGQR 2JG7_F AAAAAAAAAXXXBBBBBXXXXBBBBBXXXXXAAAAAAAAAAAAAXXXXXX chhhhhhpcchpcchhchpppphhhhhcchchphhhhphhhhphpphppc 251- 300.........:..ddddd..:.........:.........:....dddddd 301- 350.........:.........:.........:.........:.........: hhhphpchhhhh hphhhhhphhhppchhphhhch AAAAAAAAAAAA XXXXXXBBBBBXXXXXXAAAAA -------------CLYGVTEAAILA---AGYAPAIGFVHTGKPLSFVYDI my_fasta_file + +| |+ ++++| ++++ +|+ ++ ++ CTTTRRLMLHESVHDAVVERIAKAYKQVRIGDPWDPSTLYGPLHTKQAVD 2JG7_F XXXBBBBBBBXXXAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXAAAAA hpppcchhhhcphhchhhcchhchhcphchpchhchpphhphhhpcphhc 301- 350ddddddddddddd......:.....ddd.:.........:.........: 351- 400.........:.........:.........:.........:.........: hchhchcphhh chhchhccph AAAAXAAAAAA AAAAAAAXXX ADIIKFDTVVP-----------------------------KAFEIARRNP my_fasta_file ++ + ++ | + QYLAAIEQAKQQGGTLVCGGKVMDRPGNYVEPTIITGLAHDAPIVHTETF 2JG7_F AAAAAAAAAAAXXXBBBBXXXXXXXXXXXXXXBBBBXXXXXXAAAAXXXX phhhhhcphcppppphhhppchhcchpphhchphhpphhhchhhhhpcph 351- 400.........:.ddddddddddddddddddddddddddddd.........: 401- 450.........:.........:.........:.........:.........: pc hccchchhhcch hcppcphh c XX XXAAAAAAAAAA AAAAAAAA A GE-------PDREVRLACRDI-------------FRSSKTLA-------K my_fasta_file ++ + |++ | + ++ VPILYVLKFKTEEEAFAWNNEVQQGLSSSIFTKDLGRVFRWLGPKGSDCG 2JG7_F XXBBBBBBBXXAAAAAAAAAAXXXXXBBBBBXXXAAAAAAAAXXXXXXXX hhhhhhhchcpccchhhhppchppphppphhpcchpchhchhphcppchp 401- 450..ddddddd:.........:.ddddddddddddd.....:..ddddddd: 451- 500.........:.........:.........:.........:.........: hhhhhcchhhh pchphhhhhc chphhhhh hhhp AAAAAAAAAAX XXXXXXXXXX XXXXXXXX XXXX ----LIPLIEDVLAA--GEIQPPAPPE--DAQPVAIP---------LPVS my_fasta_file +||++ ++ ++ | + ++++ + + ++ ++ IVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDSWKQYMRRSTCTINYSKD 2JG7_F BBBBXXXXXXXXXXXBBXXXXXXXXXXBBXXXXXXXXBBBBBBBBBXXXX hhphphhppphchpphhppcchppppccpppcphcphhccpphphphpcc 451- 500dddd.....:.....dd..:.......dd:.......ddddddddd...: 501- 509......... hpchphcpp XXXXXXXXX LGDAGHRSS my_fasta_file |++| ++ + LPLAQGIKF 2JG7_F XXXXXXXXX hhhhpphch 501- 509......... The seq2struc alignment: my_fasta_file ---> 1ZRZ_A align_len=349 ene=-142.00 identity=4.871060 hpc_err=42.693409 size_err=0.000000 ins=9 del=44 begin1=0 begin2=0 1- 50iiiiii...:.........:.......iii.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ +++|+ |++ +++++ +|+ |++ + | + ------LGLQDFDLLRVIGRGSYAKVL---LVRLKKTDRIYAMKVVKKEL 1ZRZ_A XXXXXBBBBBBBBBXXXBBBB BBBBXXXXXBBBBBBBBXXX hphpchchhchhpcpphhchh hhchccpcchhhhchhccch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhch hhphpphhhhhpchph chhhppphpph BBBBBXXXXXXAAAAAA AAAXXXBBBBBXXXXX BBBBXXXXXXX CIMLEPGTRVSHAAVRL----AAQVGTLLVWVGEAGV--RVYASGQPGGA my_fasta_file +++|++ +| +++ + + + +++| + + + + + +++||+ VNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGD 1ZRZ_A XXXXXXAAAAAAAAAAAXXXXXXXXXXXBBBBXXXXXBBBBBBBXXXXXX hpcccchchhppcchhhcphpphhhhhphhphhppcpchhhhhchhpppc 51- 100.........:.......dddd........:.......dd:.........: 101- 150.........:.........:.........:.........:.........: cpcchh hphchhhccchchchhcchhchchpchhhhccphc phc AAAAAA AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAA AAA RSDKLL---YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVE---QLR my_fasta_file ++++ + ++ + +++++++ +++ + +|+ +++ ++ + LMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSE 1ZRZ_A AAAAAAXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBXXX hhhhhpcpcchhcchhchhphchphhhphhhccphhhcchchcphhhcpc 101- 150......ddd:.........:.........:.........:....ddd..: 151- 200.........:.........:.........:.........:.........: ph cppchchphhhhhcphphphppcchch cchccpcphpphhp AA AAAAAAAAAAAAAAAXXXXXXXXXXXX XXXXXXXAAAAAAA GI---EGSRVRATYALLAKQYGVTWNGRRYDP----KDWEKGDTINQCIS my_fasta_file | + ++ + + + + ++ + |+ + +|+ + + GHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWAL 1ZRZ_A XXBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXXAAAAAAA phhchpchphhccphchpcpppphhpphphhhhchhcpcchphphchhhh 151- 200..ddd....:.........:.........:..dddd...:.........: 201- 250.........:.........:.........:.........:.........: hhpphhhph pchhhhhhphhhhhphhhppchhphhhchhc AAAAAAAAA AAAAAAAXXXXXXBBBBBXXXXXXAAAAAAA AATSCLYGV--------TEAAILAAGYAPAIGFVHTGKPLSFVYDIAD-- my_fasta_file + ++ + + +++ ++ +++ ++| + |+ + ++ GVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSMSVKA 1ZRZ_A AAAAAAAAAXXXXXXXXAAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAXX phhhhchhhpcphhchhpppcphcpppcchhhphhhccphchhcphphch 201- 250.........dddddddd..:.........:.........:........dd 251- 300.........:.........:.........:.........:.........: hhchcphhhchhchhccphpchccchchhhcchhcppcphhchhhh AAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA ----IIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPL my_fasta_file +++ + + + + +++++ + + ++ ++ +++ | ASVLKSFLNKDPKERLGCLPQTGFADIQGHPFFRNVDWDMMEQKQVVPPF 1ZRZ_A XXXXXXXXXXXXXAAAAAAAXXXXXXXXAAAAXXXXXXXXXXXXXXXXXX hphhcphhpcchccchphhhppphhchpphhhhcphchchhcpcphhhhh 251- 300dddd.....:.........:.........:.........:.........: 301- 349.........:.........:.........:.........:......... hcchhhhpchphhhhh cchphhhhhhhh ph pchphcp p AAAAAAXXXXXXXXXX XXXXXXXXXXXX XX XXXXXXX X IEDVLAAGEIQPPAPP--EDAQPVAIPLPV----SL----GDAGHRS-S my_fasta_file ++ ++++ + +++ +++ + ++++ ++ + + KPNISGEFGLDNFDSQFTNERVQLTPDDDDIVRKIDQSEFEGFEYINPL 1ZRZ_A AAAAXXXXXXXXXXXXBBXXXXXXXXXXXXAAAAXXAAAAXXXXXXXAA chphppchphcphcpphppcchphphcccchhcchcppchcphchhphh 301- 349.........:......dd.:.........:dddd..dddd.......d. The seq2struc alignment: my_fasta_file ---> 2IWI_B align_len=308 ene=-124.00 identity=5.194805 hpc_err=46.753246 size_err=0.000000 ins=42 del=3 begin1=0 begin2=0 1- 50iiiii....:.........:iii......:ii....iiii.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++ + ++++ + + ++ + ++ + + |+ + + -----GKDREAFEAEYRLGP---LLGKGGF--GTVF----AGHRLTDRLQ 2IWI_B XXXAAAAAXXBBBBB BBBBBXX BBBB BBBBXXXXBB pcccchhchchchph hhpcpph pphh hphchpcchp 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...ii....:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ + ++ + ++|++ | + +++ + |+| | +| VAIKVIPRNRVLGWSPLSDSVTC--PLEVALLWKVGAGGGHPGV------ 2IWI_B BBBBBXXXXXXAAAAAAAAAAXX XXXXXXXXBBBBBXXBBBB hhhchhhcpchhphphhpcphph hhchhhhhchphppphhph 51- 100.........:.........:.........:.........:.........: 101- 150iiiiii..ii.........:.......iiiiii......:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file |+++ + +++ + +|+ ++ + +++ + ------IR--LLDWFETQEGFMLVLER------PLPAQDLFDYITEKGPL 2IWI_B BX XXXBBBAAAAAAAAXXX XAAAAAAAAAAAAAAAA hc hhchhcppcphhhhhcc hhhhpchhchhpccphh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiiii.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++++ ++ ++ +++ ++++ |+ + + ++++ +++ +++ ++ GEGPSRCFFGQVVAAIQHCHSRGV------VHRDIKDENILIDLRRGCAK 2IWI_B AAAAAXBBXXXXXXXXBBBBXXXX BBBBXXXXXXBBXXXXXXXX pcphpchhhpphhhhhphhhpcph hhcchcccphhhchccphhc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + |++ ++++++ +++++ + +++++ + +++ + + +| LIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLY 2IWI_B XXXXXXXXXAAAAAAXXXXAAAAAAAAAAAAAAAAAAXXXXXXXAAAAAA hhchppphhhhcchhpchcppchhphhchhpchphhhhhhphhphphhhh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphh hhhcchphhhhhhhhph AAAAAAAAAAAAAAAAAAAAAAAXXXXXXX XXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPP---APPEDAQPVAIPLPVSL my_fasta_file +++ + +++ ++ +| + |+ |+++++ ++++|++ +++ + + DMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEE 2IWI_B XXXXXXXXXXAAAAAAAAAAXXXXXXXXXXAAAAAAXXXXXXXXXXXAAA chhhpchhhcccpchhchchhhhhhhphchhhhhcchhhhchppchphcc 251- 300.........:.........:.........:ddd......:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file ++ ++ ILLDPWMQ 2IWI_B AAAXXXXX hhhchhhp 301- 308........ The seq2struc alignment: my_fasta_file ---> 3EAG_A align_len=328 ene=-83.00 identity=5.792683 hpc_err=43.902439 size_err=0.000000 ins=4 del=23 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhp hhhhccchphhhhphpphc hhcphhh X BBXXXX XXXXXXXXBBBBBXXXBBB BXXXBBB --M---TWLPLN--------PIPLKDRVSMIFLQYGQID----VIDGAFV my_fasta_file + + + + +++ +++++ +++++ + ++++ + AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGID 3EAG_A XXXBBBBBXXXXAAAAAAAAAAAAXXXBBBBBBXXXXXXAAAAAAAXXXB hhchhhhhphppphhpphhhhhcchphchpphchchhhhhppphchhphc 1- 50dd.ddd...:..dddddddd.........:.........dddd......: 51- 100.........:.........:.........:.........:.........: hhccpphcphhhhpphhhhhhchppchphhhhchhhphpphhh h BBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBB B LIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLV------W my_fasta_file + + ++ ++ + + |+++ ++ +++++ + + VYEGFDAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSE 3EAG_A BBBXXXXXXXXXXXXXBBBBXXXXXXXXAAAAAAAAXXXXBBBAAAAAAA hhcphchhphcchchchhhhpphhccphchhchhhphphhhhpphphhpc 51- 100.........:.........:.........:.........:...dddddd: 101- 150.........:.........:.........:.........:.........: hpchphchhhppphpphcpcchhhphchhhccchchchhcchhchchpch BXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXX VGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEP my_fasta_file +++ + +| +++ ++|+ ++ + +|+ + + +++ |++++ NVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSA 3EAG_A AXXXXXBBBBBBXXXXAAAAAAAAAAAAAAXXXXXBBBXXXBBXXXXXXB phhhhhhhhphhpphpcppphphhhhhhchhphhhphhhpphhcphphph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhccphcphcphcppchchphhhhhcphphphppcchchcchccpcphp AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAA APARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTIN my_fasta_file + ++ + +++|+++++ ++++ + + +++| | ++ +++ RLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEF 3EAG_A BXXXXXXXXXXXXXXBBBBBXXXXBBBXXBBBBXXXXXXXXBBBBXXXXX chhpphcpchpppphhhhhchcchcphhhcccpchhhhchcphhhpphch 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.ii......:.........: phhphhpphhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcp AAAAAAAAAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAA QCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDT my_fasta_file + + ++| | + ++++ | ++ ++ +++++ +| DHADIFADLGAIQTQFHYLVRTVPSEGLIVC--NGRQQSLQDTLDKGCWT 3EAG_A XXXXXXXXAAAAAAAAAAAAXXXXXXXBBBB BXXXAAAAAAAXXXXXX chhchhhchphhppphhhhhcphhpcphhhh ppcppphpcphccphhp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:......ii.: hhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpch AAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX VVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEI my_fasta_file |+| + + + || + + + ++++ + +++ +++ + + + PVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMN--AL 3EAG_A XBBBBXXXXXBBBBBBXXXXXBBBBBXXBBBBBBXXXXXXAAAAAA AA hhcchppchphphpchphcpphchhhcpcphpchchchhpchpchp hh 251- 300.........:.........:.........:.........:.........: 301- 328.........:.........:........ phhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXX QPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + | + + ++ ++||+ ++ AVIAAARHVGVDIQTACEALGAFKNVKR 3EAG_A AAAAAAAAAXXXAAAAAAAAAXXXXBBX hhhhhhchhphchpphhchhphhcphcc 301- 328.........:.........:........ The seq2struc alignment: my_fasta_file ---> 2FH9_A align_len=305 ene=-160.00 identity=6.557377 hpc_err=43.934426 size_err=0.000000 ins=31 del=0 begin1=0 begin2=0 1- 50iiiiii...:.........:iii......:ii....iiii.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ ++ +++| + ++ + ++ ++ ++ ++ ------LADGAHIGNYQIVK---TLGEGSF--GKVK----LAYHTTTGQK 2FH9_A XXXXXXXXXBBBBB BBBBBXX BBBB BBBBXXXXXB hhcphhhpphphhc phpcpph pchc hhhhpppppc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:....i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ |+ +++++++++ + +++++ + +++ + + | VALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-KDEII 2FH9_A BBBBBBXXXXXAAAAAAAAXXXXXXXXXXXXXXXXBBXXBBXXX BBAAA hhhchhpcchhhcpchppchccchphhchhchhhhhchhchhcp ccchh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:....iii..:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + |+ |+ +|+| + + + |++++ ++++++++++| + + MVIEYAGNELFDYIVQRDKMSEQE---ARRFFQQIISAVEYCHRHKIVHR 2FH9_A AAAAXXXXXAAAAAAAAAAAAAAA AAAAAXXXXXXXXXXXXBBBXXX hhhchhppchhchhhpccchpcpc hcchhpphhphhchhhchchhhc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +|++ ++ ++ ++ +| + + +++ +|||++++++| + +|+ DLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGK 2FH9_A XXBBBXXXXXXXXXXXXXXXXXXXAAAAXXXXXXXXAAAAAAAAAAAAAA chchcphhhcchhphchhchphpphhpcpphhcpphpphphhhhchhppc 151- 200.........:.........:.........:.........:.........: 201- 250...iii...:.........:....iiiiiiiii......:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file | + + | + + + + + ++ + +++ + LYA---GPEVDVWSCGVILYVMLC---------RRLPFDDESIPVLFKNI 2FH9_A AAX XXXXXXXXAAAAAAAAAX XXXXXXXXXXAAAAAAA hhh phchchhphphhhhhhhh cchhhcccphhhhhcph 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file + ++|+|+++ + + + + +++ + + ++++ + ++ + SNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEYL 2FH9_A AAAXXXXXXXXXXAAAAAAXAAAAXXXXXXXXXXXXAXXXXBXXXXXXXX ppphhphhchhphphhphhcchhhhphhpchphhchhpcchhchchhchh 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + + + LPPDL 2FH9_A XXXXX hhhch 301- 305..... The seq2struc alignment: my_fasta_file ---> 1U5R_B align_len=318 ene=-146.00 identity=6.289309 hpc_err=49.371070 size_err=0.000000 ins=9 del=13 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpph cphhhhpph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXX BBBBBXXXX MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGI-RTHIPVGSV my_fasta_file +++ ++ ++ + ++ ++| ++ + + +|+ + ++ |+++| DPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 1U5R_B XXAAAAAXXXXXAAAABBBBBBBBBXXXXBBBBBBBXXXXBBBBBBBBBX chchhchhhccchcchhpchcchphpphphhhhhcchcppchhhhcchph 1- 50.........:.........:.........:.........:d........: 51- 100.........:.........:.........:.........:.........: hhhhhchppchphhhhchhhp hpphhhhhpchphchhhppphpphc BBBBBBXXXXXXAAAAAAAAA XXXBBBBBXXXXXBBBBXXXXXXXA ACIMLEPGTRVSHAAVRLAAQ----VGTLLVWVGEAGVRVYASGQPGGAR my_fasta_file +++++ + + ++ ++|| + + ++ ++ +++ ++ +++ SGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGS 1U5R_B XXXXAAAAAAAAAAAAAAAAAXXXXXXXXBBBBBBBXXBBBBBBBXXXBB ppcpppcchpchhcchchhpchchhpphphcphhhcchphhhhhchhhpp 51- 100.........:.........:.dddd....:.........:.........: 101- 150.........:.........:.........:.........:.........: pcchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppch AAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAA SDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRV my_fasta_file + ||++ |+ | |+++ +|++ ++ ++ + +++++ +++|++++ + ASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSE 1U5R_B AAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXBBBBX hpchhchhcchhpchchhhhphphhpphhhhhphphhhcchchpphhhpc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: chphhhhhcphphphppcchchcchccpcphpphh phhpphhh AAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAA AAAAAAAA RATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCI-------SAATSCLY my_fasta_file +++ +|+++ ++++ +++ ++ ++++++++ + + + PGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 1U5R_B XXBBBBXXXXXXXXXXXXXXXXXXXXXXXAAAAAAXXXXXXXXAAAAAAA hphhchpchpphphhhhhpphhpphhhhhhchhhhhccpphcpchchhph 151- 200.........:.........:.........:.....ddddddd.......: 201- 250.........:.........:.........:.........:.........: phpchhhhhhphhhhhphhhppchhphh hchhchhchcphhhchhchhc AAAAAAAAAXXXXXXBBBBBXXXXXXAA AAAAAAAXAAAAAAAAAAAAA GVTEAAILAAGYAPAIGFVHTGKPLSFV-YDIADIIKFDTVVPKAFEIAR my_fasta_file | |+ + ++ +++ ++ + + + |+++ + + +|++++ GITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSC 1U5R_B AAAAAAAAAXXXXXXXXXAAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAA phphhchhccchhhhphphhphhhhhhppcphhhppphhpchhcphhcph 201- 250.........:.........:........d:.........:.........: 251- 300.........:.........:.........:......iiiiiiiii....: cphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchp XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXX RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQ my_fasta_file + ++++||++ + + ++++ + ++ ++++++ + + LQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRT---------KDAVR 1U5R_B XXXXXXXXXXAAAAXXXAAAAXXXXXXAAAAAAAAA AAAAA hpchhpcchppchhhchchhhccchhphhhchhpcp cchhc 251- 300.........:.........:.........:.........:.........: 301- 318.........:........ hhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXX PVAIPLPVSLGDAGHRSS my_fasta_file + ++ + + + + ELDNLQYRKMKKILFQEA 1U5R_B AXXXXXXXXXXXXXXXXX chcphphcchcchhhpch 301- 318.........:........ The seq2struc alignment: my_fasta_file ---> 1MB4_A align_len=370 ene=-123.00 identity=5.945946 hpc_err=39.459458 size_err=0.000000 ins=1 del=65 begin1=0 begin2=0 1- 50.........:.........:.........:.......i.:.........: h phhhhp hhhhccchphhhhphpphchhcphhhhhc X BBXXXX XXXXXXXXBBBBBXXXBBBBXXXBBBBBB M---TWLPLN-----------PIPLKDRVSMIFLQYGQIDVIDGAFVLID my_fasta_file | + + + +++++|+ | + +++ ++ + ++| MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-QIGVPAPNFGKD 1MB4_A XBBBBBXXXXAAAAAAAAAAAAXXXXXXXBBBBBBXX XXXXXXXXXXXX hchphhphcphhpphhhpchhcccchchhchhhhppp phphhhhphpcc 1- 50.ddd.....:ddddddddddd........:.........:.........: 51- 100.........:.........:.........:.........:.........: cpphcphhh hpphhhhhhchppchphhhhchhhp hpphhhhhpchp XXXXBBBBB XXXXBBBBBBXXXXXXAAAAAAAAA XXXBBBBBXXXX KTGIRTHIP---VGSVACIMLEPGTRVSHAAVRLAAQ-VGTLLVWVGEAG my_fasta_file + + + + + +++| ++ + +| ++ + ++++ AGMLHDAFDIESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAAST 1MB4_A XXXXBBXXXAAAAXXXXBBBBXXXAAAAAAAAAAAAAXXXXXBBBBXXXX hphhhchhchcphcphchhhphpppphpcchhhhhcphphcphhhchhpp 51- 100.........ddd.......:.........:.......d.:.........: 101- 150.........:.........:.........:.........:.........: hchhhppphpphcpcchhhphchh hccchchchhcchhchc XBBBBXXXXXXXAAAAAAAAAAAA XXAAAAAAAAAAAAAAA VRVYASGQPGGARSDKLLYQAKLA--------LDEDLRLKVVRKMFELR- my_fasta_file | ++ ++ ++++ +++ + + + |+ +++++ LRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYER 1MB4_A XXXXXXBBBBXAAAAAAAAAAAAAXXXXBBBBXXAAAAAAAAAAAAAAAX hchccchhhphchhphcphhhphhhppcphhppphphphhhhhhpphhcc 101- 150.........:.........:....dddddddd.......:.........d 151- 200.........:.........:.........:.........:.........: hpch hhhccphcphcphcp pchc AXXX AAAAAAAAAAAAAAA AAAA --------------FGEP-------APARRSVEQLRGIEG------SRVR my_fasta_file +|++ +++ + + +|+ ++++ GLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDI 1MB4_A XXBBBBBBBBBXXXXXXXAAAAAAAAAAAAAAAAAAAAAAXXXXXXAAAA phhchhphhphphhpphphpphcchhpphphhpchhppchhphhpphhch 151- 200dddddddddddddd....ddddddd....:.........:dddddd...: 201- 250.........:.........:.........:.........:.........: hphhhhhcphphphppcchchcchc cpcphpphhphhpphhhphpchh AAAAAAAAAXXXXXXXXXXXXXXXX XXXAAAAAAAAAAAAAAAAAAAA ATYALLAKQYGVTWNGRRYDPKDWE--KGDTINQCISAATSCLYGVTEAA my_fasta_file + + +++ +|++ +++|+++ +++ ++ ++ + ++++||+ DKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEAN 1MB4_A AAAAAAAAAXXXXXXXXXXXXXXXXBBXXXXXXXXXXXXAAAAAAAAAAA ccchhcphcppphhpcphphhhhpphhhhhchcccppppccchchphchp 201- 250.........:.........:.....dd..:.........:.........: 251- 300.........:.........:.........:.........:.........: hhhhphhhhhphhhppc hhph hhchhchhchcphhhchhchh AAAXXXXXXBBBBBXXX XXXA AAAAAAAAXAAAAAAAAAAAA ILAAGYAPAIGFVHTGK--PLSF------VYDIADIIKFDTVVPKAFEIA my_fasta_file + +++++ + ++|++ + ++ + + +|+ | +++ + KILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHN 1MB4_A AAAXXXXXXXXBBXXXXBBXXXXBBBBBBBBBBXXXXXAAAAAAAAAXXX chhphpcphhhhcpphhchphhchhpphhphchcpphhhcchcchhhphp 251- 300.........:.......dd:...dddddd:.........:.........: 301- 350.........:.........:.........:.........:.........: cc phpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcc AX XXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXX RR-NPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPED my_fasta_file + +++ | +++ + ||++ ++ + ++ + | DWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMGDDFLNAFTVGD 1MB4_A XXBBBXXXXAAAAAAAXXAAAAXXXXXBBBBBBBBBXXBBBBBBBBBBBB chhchhhpccchphcchphhchppphphhhpchcchhhpcchhphhphpc 301- 350..d......:.........:.........:.........:.........: 351- 370.........:.........: hphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXX AQPVAIPLPVSLGDAGHRSS my_fasta_file ++ + +| + +++ ++ QLLWGAAEPLRRTLRIILAE 1MB4_A XXXXXXAAAAAAAAAAAAAX phhhphhchhccphchhhhc 351- 370.........:.........: The seq2struc alignment: my_fasta_file ---> 2J08_A align_len=419 ene=-117.00 identity=6.443914 hpc_err=32.696897 size_err=0.000000 ins=0 del=114 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhh ccch phhhhp hpp X BB XXXXXXXX XXXX BBBBBX XXB -M--TW--LPLNPIPL-------KDRV--SMIFLQ----YGQ-------- my_fasta_file +| ++| + + | + GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFL 2J08_A XXBBBBXXXXXXXXXXAAAAAAAXXXXBBBBBBBXAAAAXXXAAAAAAAA phhhhhhcpchchhchhhhhchhhcphhhphhhhchpphcpphccchhhh 1- 50d.dd..dd.:......ddddddd....dd:.....dddd:..dddddddd 51- 100.........:.........:.........:.........:.........: hchhcphhhhhcc pphcphhhhpphhhhhhchpp ch BBBXXXBBBBBBX XXXBBBBBXXXXBBBBBBXXX XX ----------IDVIDGAFVLIDK---TGIRTHIPVGSVACIMLEPGT-RV my_fasta_file ++++ + ||+ + + + ++ ++| | ++| ++ ENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYG 2J08_A AAAAAAAAAAAAAXXXBBBBBXXAAAAAAAAAAAAXXXBBBBBXXXXAAA cphchhcchhchcpphhhhhcphhhcchhchhcchchchhhhhpphphhp 51- 100dddddddddd.........:...ddd...:.........:.......d.: 101- 150.........:.........:.........:.........:.........: phhhhchhhphpphhhhhpchphchhhppphpphcpcch hhphchh XAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAA AAAAAAA SHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKL----LYQAKLA my_fasta_file +++| +++ ++ | ++ + + +++ + + +++ + + +| RYRDGRVREALPVPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLP 2J08_A AAAAAAAAAAXXXXBBBBXXXXXXXXXXXXXXXXAAAAAXXXXXXXXXXX chccpchcchhhhhhhhhhhhhhhhhchhchhchhphhpchhcphhhhhh 101- 150.........:.........:.........:.........dddd......: 151- 200.........:.........:.........:.........:.........: hccchchchhcchhchchpchhhhccphcphcphcppchchphhhhhcph XXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAX LDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQY my_fasta_file +|+|++ + + ++ ++ + +|+ ++++ ++ | + | + PPEALPKGPEEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEER 2J08_A XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXXAAAAX hhchhhcphccpchhccchphhhhchpcchhhhphchhhchchhchhccc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: phphppcchch cchcc pcphpphhphhpphhhph XXXXXXXXXXX XXXXX XXAAAAAAAAAAAAAAAA GVTWNGRRYDP-----KDWEK-----------GDTINQCISAATSCLYGV my_fasta_file +++ + + + | ++ + +|+++ ++++ DRLDGEGGSRLSPYFALGVLSPRLAAWEAERRGGEGARKWVAELLWRDFS 2J08_A XXXXXXXXXXXAAAAAXXXXXAAAAAAAAAAAXXAAAAAAAAAAAAAAAA cchcpcpppchphhhhhphhphchhhhchcccppcphcchhhchhhcchp 201- 250.........:.ddddd...:.ddddddddddd.......:.........: 251- 300.........:.........:.........:.........:.........: pchhhh hhphhhhhphhhppchhphhhchhch hchcphhhchh AAAAAA AXXXXXXBBBBBXXXXXXAAAAAAAA AXAAAAAAAAA TEAAIL---AAGYAPAIGFVHTGKPLSFVYDIADI----IKFDTVVPKAF my_fasta_file ++ | + + |+ +++++ + ++|+ ++ +++ +++ YHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRE 2J08_A AAAAAAXXXXXXXXXXXXXXXXXXXXXAAAAAAAAXXXXXXAAAAAAAAA hhhhhhhhhhhcchhchchphhhhpccchhhphhhcpcpphhhhchhhcc 251- 300......ddd:.........:.........:.....dddd:.........: 301- 350.........:.........:.........:.........:.........: chhccphp chccchchhh cchhcppcphh chhhhhcc AAAAXXXX XXXAAAAAAA AAAAAAAAAAA AAAAAAAA EIARRNPG---EPDREVRLAC-----RDIFRSSKTLA-----KLIPLIED my_fasta_file + | + ++++ + + + ++ +|+ + LHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGW 2J08_A AAAAXXXXAAAAAAAAAAAAAXXXXXAAAAAAAAAAAXXXXXAAAAAAAA hhhpphhppchchphhphhhchhhhhhcchcchhchhhhcpcchhphpph 301- 350........ddd........:.ddddd...:.......ddddd.......: 351- 400.........:.........:.........:.........:.........: hhh hpchphhhhhcc hphh hhhhhhphpchphc AAA XXXXXXXXXXXX XXXX XXXXXXXXXXXXXX VLA---AGEIQPPAPPED--------AQPV------AIPLPVSLGDAGHR my_fasta_file + | ++ +| + + ++++ | + |++ + ++ + QWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPKDPVV 2J08_A AAAXXXXXXXXXXXXXXXAAAAAAAAXXXXAAAAAAXXXXXXXXXXXXXX phhpphphchhhhhchhphhhppcchchcpchhcchhhchhphhhcchhh 351- 400...ddd...:........dddddddd...:dddddd...:.........: 401- 419.........:......... p p X X S-----------------S my_fasta_file DLEEARRRYLRLARDLARG 2J08_A XAAAAAAAAAAAAAAAAAX chcchccchhchhcchhcp 401- 419.ddddddddddddddddd. The seq2struc alignment: my_fasta_file ---> 3FWY_A align_len=312 ene=-96.00 identity=5.769231 hpc_err=37.500000 size_err=0.000000 ins=44 del=7 begin1=0 begin2=0 1- 50.........:.........:.........:.........:..iiiii..: h phhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpp X BBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXX -M-TWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGS my_fasta_file + +++ + +++| ++++ + + ++ + + GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH-----DST 3FWY_A XXBBBBBBXXXXXXAAAAAAAAAAAAAAXXXXBBBBBBXXXX XXX phchhhhhpcpphpcpppppphphhhphhpcchhphphchch cpp 1- 50d.d......:.........:.........:.........:.........: 51- 100.iiiii...:.........:.....i...:.........:......iiii hhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcc XBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAA VACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDK my_fasta_file + + + | + +++ ++| + + +++ F-----TLTGSLVPTVIDVLKDVDF-HPEELRPEDFVFEGFNGVMC---- 3FWY_A A AAAXXXXXXAAAAAAAXXX XXXXXXAAAAXBBXXXXXBB h phppphhhphhchhcchch hhcchchcchhhcphpphhh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........iiiiiiiiiiiii.......: hhhphchhhccchchchhcchhchchpchhhhccphcphcphcppchchp AAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAA LLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRAT my_fasta_file + ++ |+ ++ +|+ ++| +++ + ++ + VEAGGPPAGTGCGGYVVGQTVKLLKQHHL-------------LDDTDVVI 3FWY_A BBXXXXXXXXXXXXAAAAAAAAAAAAXXX XXXXXBBB hchpphhhppphpphhhppphchhcphhh hccpchhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhh AAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAX YALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAA my_fasta_file + |+ + ++ ++++++ +++ ++ ++++ |+ + + + |++++ FDVLGDVVCGGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNY 3FWY_A BBBXXXXXXXXXXXXXXXXXBBBBBBXXXAAAAAAAAAAAAAAAXXXXXX hchhpchhhpphhhhhphhcphhhhphpchcphhhhpchhhhhphcpcph 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: phhhhhphhhppchhphhhchhchhchc phhhchhchhccphpch XXXXXBBBBBXXXXXXAAAAAAAAAXAA AAAAAAAAAAAXXXXXX GYAPAIGFVHTGKPLSFVYDIADIIKFD-----TVVPKAFEIARRNPGEP my_fasta_file + |++ + + +|+ ++ | ++ ++ + +++ + + KVRLAGCVANRSRATDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLF 3FWY_A XXBBBBBBBBXXXXXAAAAAAAAAAXXXBBBBBXXXAAAAAAAAXXXXXX chchhphhhpcpchpcchcchhccpphcchhhhhchchhccpchcccphh 201- 250.........:.........:........ddddd......:.........: 251- 300.iiiiii..:.........:.........:iiiiiiiiii.........: ccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhh XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXX DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPL my_fasta_file ++ +++++| |+| | + +++ + +| E------MDEDQDVLAARAEYIRLAESLWR----------GLDPIDPHSL 3FWY_A X XXXXAAAAAAAAAAAAAAAAAAA XXXXXXXXXX c hcccpchhhhchchhchhcphhc phchhchhph 251- 300.........:.........:.........:.........:.........: 301- 312.........:.. hhphpchphcpp XXXXXXXXXXXX PVSLGDAGHRSS my_fasta_file |+ +++++ + PDRDIFELLGFD 3FWY_A XAAAAAAAXXXX hccchhchhphc 301- 312.........:.. The seq2struc alignment: my_fasta_file ---> 1WZA_A align_len=488 ene=-66.00 identity=4.918033 hpc_err=29.098362 size_err=0.000000 ins=0 del=183 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhph h hhccchphhhhphp X BB XXXXX X XXXXXXBBBBBXXX -----M--TW----------LPLNP------I----PLKDRVSMIFLQYG my_fasta_file + ++ + + ++ |++ +| FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVN 1WZA_A XXXXXXBBBBXXXXXXXXXXXXXXXAAAAAAXAAAAXXXXXXXXXXXXXX hcchpphhchhhcphhcpcpcphpchcphhcchchhpcpchcphhchphp 1- 50ddddd.dd.:dddddddddd.....dddddd.dddd...:.........: 51- 100.........:.........:.........:.........:.........: phchhcphh hhhccpphcphhh h pphhhhh BBBBXXXBB BBBBXXXXBBBBB X XXXBBBB QIDVIDGAF--VLIDKTGIRTHIP-----V-------------GSVACIM my_fasta_file |+ ++ + + + ++ + + + + | GIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVII 1WZA_A BBBBXXXBBXXXXXXXXXXBBBBBXXXXXXAAAAAAAAAAAAAXXXBBBB phhhhhhhcphphhphchpchhchphchpphcchhchhchhhpcphchhh 51- 100.........dd........:....ddddd:ddddddddddddd......: 101- 150.........:.........:.........:.........:.........: h chppchphhhhchh hphpphhh B BXXXXXXAAAAAAA AAXXXBBB L---EPGTRVSHAAVRLA------------------------AQVGTLLV my_fasta_file + ++ + +| DLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWH 1WZA_A BXXXXXXXXXXAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBB chhhphppcchhhhhchpcccppchcchhhhhphcpcpccpchcppchhh 101- 150.ddd.....:........dddddddddddddddddddddddd.......: 151- 200.........:.........:.........:.........:.........: hhpc hphchhhppphpph cpcchhhphchh BBXX XXXBBBBXXXXXXX AAAAAAAAAAAA WVGE----AGVRVYASGQPGGA----RSDKLLYQAKLA------------ my_fasta_file ++ ++ +++ + +++ + +++ +|+ YSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAM 1WZA_A BBXXBBBBXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAXXXXBBBBBXXX hphpphhhphhhpphhchphpphchpcchhphhchhhcpphcphchcphh 151- 200....dddd.:.........:..dddd...:........dddddddddddd 201- 250.........:.........:.........:.........:.........: hc cchchchhcchh chch p XX AAAAAAAAAAAA AAAA X -------LD-EDLRLKVVRKMF---------------ELRF--------G my_fasta_file | +++ + | + + HIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFD 1WZA_A XXXXXXXXXAAAAAAAAAAAAAXXXXXXBBBBBXXXXAAAAXXXXXXXXX hhhhhhphccphphhcchcpchcchchhhhhpchhchpcphhhhhchphc 201- 250ddddddd..d.........:..ddddddddddddddd..:.dddddddd: 251- 300.........:.........:.........:.........:.........: chhhhccphcphcph cppchchphhhhhcphphphppcchchcch XXAAAAAAAAAAAAA AAAAAAAAAAAAAAAXXXXXXXXXXXXXXX --EPAPARRSVEQLRGI---EGSRVRATYALLAKQYGVTWNGRRYDPKDW my_fasta_file ++ + + +|++++ +|+ + | + + + | ++++|+++ STFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLT 1WZA_A BBXXAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAXXXXXXXXXXXXX pphphchhchhhhphchphhhphpcchchhhphhccchphpphhchhhhp 251- 300dd.......:.......ddd.........:.........:.........: 301- 350.........:.........:.........:.........:.........: ccpcphpphhphhpphhhphpchhhhhhphhhhhp hhhppchhphhh XXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXBB BBBXXXXXXAAA EKGDTINQCISAATSCLYGVTEAAILAAGYAPAIG---FVHTGKPLSFVY my_fasta_file + ++++++++ ++ |+++ |+ +++| |+ + ++ +++ + NHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEV 1WZA_A XXXXXXAAAAXXXXAAAAAAAAAAAXXXXXXXBBBXXXXXXXXXXXXAAA phcppchhcphppccpchchhhphhhphhpphhhhhpcchphcppphhch 301- 350.........:.........:.........:.....ddd.:.........: 351- 400.........:.........:.........:.........:.........: c hhchhchcphhhchhchhccphpchccchc hhhcchhcppcphh A AAAAAXAAAAAAAAAAAAAXXXXXXXAAAA AAAAAAAAAAAAAA D--IADIIKFDTVVPKAFEIARRNPGEPDREVR---LACRDIFRSSKTLA my_fasta_file + + +++ | |++|+|++ +|+ |+++++ + ++ IREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF 1WZA_A AXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXAAAAAAAAAAA hcchhphhppppcpcphhchhhhpcphpphcpcccphcphhphhcchhhh 351- 400.dd......:.........:.........:...ddd...:.........: 401- 450.........:.........:.........:.........:.........: chhhhhcchh hhpch phhh hhcch p AAAAAAAAAA AXXXX XXXX XXXXX X KLIPLIEDVL-----AAGEI-------QPPA-------PPEDA------Q my_fasta_file +++ ++++ ++|++ +++ RNENPVFYTGKIEIINGGLNVVAFRRYNDKRDLYVYHNLVNRPVKIKVAS 1WZA_A AAAXXAAAAXBBBBBXXXXXBBBBBBBXXXXBBBBBBBXXXXXBBBBBBX cpcphhhhppchchhppphphhhhcchpcccchhhhhphhpchhchchhp 401- 450.........:ddddd....:ddddddd..:.ddddddd.:...dddddd: 451- 488.........:.........:.........:........ hh hhhhhhph pch phcp p XX XXXXXXXX XXX XXXX X PV------AIPLPVSL--GDA------GHRS------S my_fasta_file ++ +++++ + + + GNWTLLFNSGDKEITPVEDNNKLMYTIPAYTTIVLEKE 1WZA_A XXBBBBBBXXXXXXXXBBXXXBBBBBBXXXXBBBBBBX pphphhhpppccchphhccppchhhphhhhpphhhccc 451- 488..dddddd.:......dd.:.dddddd..:.dddddd. The seq2struc alignment: my_fasta_file ---> 1KFL_G align_len=351 ene=-112.00 identity=6.552707 hpc_err=39.601138 size_err=0.000000 ins=1 del=46 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphh hhphpphchhcphhhhhccpphcphhhh XBBXXXXXXXXXXXXBBB BBXXXBBBBXXXBBBBBBXXXXBBBBBX MTWLPLNPIPLKDRVSMI----FLQYGQIDVIDGAFVLIDKTGIRTHIPV my_fasta_file | +++ + + + ++ + +++ + + + |++ + +++ MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIHKILKGN 1KFL_G XXXXXXXXXXXXXXXXXXAAAAAAAXXXXAAAAAAAAAAAAAAAAAAAXX hphppcchchcchcchhhhhhhhcchhhpcphhpphhhhcchhhchhcpp 1- 50.........:........dddd.......:.........:.........: 51- 100.........:.........:.........:.........:.....i...: pphhhhhhchppchp hhhhchhhphpphhhhhpchphchhhp XXXBBBBBBXXXXXX AAAAAAAAAXXXBBBBBXXXXXBBBBX GSVACIMLEPGTRVS--------HAAVRLAAQVGTLLVWVGEAGVRVYAS my_fasta_file + |+ + ++ +|++ +|+ |+ + ++ DDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYF-EKPR 1KFL_G XXXBBBBBBXXXXXXAAAAAAAAAAAAAAAAAXXXXBBBBBBXXX XXXX ccchhhhhphhphhchhhhcchhpchhhhccchccchchhhchhh cchc 51- 100.........:.....dddddddd......:.........:.........: 101- 150.........:.........:.........:.........:.........: pphpphcpcchhhphchhh ccchchchhcchhchchpch hhhccp XXXXXXAAAAAAAAAAAAX XAAAAAAAAAAAAAAAAXXX AAAAAA GQPGGARSDKLLYQAKLAL-DEDLRLKVVRKMFELRFGEP----APARRS my_fasta_file |++ ++ + ++ + + || +++++ +++ +|+| +++ TTVGWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMIT 1KFL_G XXXXXXAAAAXXXXXXXXXAAAAAAAAAAAAAAAAAAXXXBBBBXXXXXX pphphcphhpchhhcpphphpcphchhcchhhchpcpphhhhpchhchhp 101- 150.........:.........d.........:.........:dddd.....: 151- 200.........:.........:.........:.........:.........: hcphcphcp pchchphhhhhcphphphppcchchcchccpcphpph AAAAAAAAA AAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAA VEQLRGIEG----SRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQC my_fasta_file +|+ + ++ + ++ + + ++++++ + + + + + PQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDA 1KFL_G AAAAXXXXXBBBBXXXXXXXAAAAAAAXXXXXXBBBBXXXXXXXAAAAAA hphhhchhphphhphcppcpphhcchhpphphhhphcpppcpphchhhch 151- 200.........dddd......:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hphhpphh hphpchhhhhhphhhhhphhhppchhphhhchhchhc AAAAAAAA AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAX ISAATSCL-----YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIK my_fasta_file | || + + ++|| ++ ++++ + | ++++ +++ + ++ INAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEV 1KFL_G AAAAXXXXBBBBBXXXXXBBBBBXXXXXXBBBBBXXXXXXXXXAAAAAAA hphhphhhhhhphpchphphhhppppppchhhhhcppcchphphchhhch 201- 250........ddddd......:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcphhhchhchh ccphpchccchchhhcchhcppcphhchhh AAAAAAAAAAAA AXXXXXXXAAAAAAAAAAAAAAAAAAAAAA FDTVVPKAFEIA----RRNPGEPDREVRLACRDIFRSSKTLAKLIP---- my_fasta_file + ++++ + + + + + ++ + +++ +++ + + ++ KEGLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGV 1KFL_G AAAAAAXXXXXXBBBBXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXBBBB ccphpchphhhphhhchphhpppcphccphchhhchhpphhppcchhhph 251- 300.........:..dddd...:.........:.........:......dddd 301- 350.........:.........:.........:.........:.........: hhc chhhhpchphhh hhcchph hhhhhhhphpchphcp AAA AAAAXXXXXXXX XXXXXXX XXXXXXXXXXXXXXXX ---LIE----DVLAAGEIQPPA--PPEDAQP---VAIPLPVSLGDAGHRS my_fasta_file + + +|++|| + + + + ++ ++ |+++ + | MVESHLVEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKARR 1KFL_G BBBXXXBBBBXXXXXXXXXXXXBBXXXXXXXAAAAAAAAAAAAAAAAAAA hhcphhhcpppphcppchhhhpcphpchhhphccpchhhcphhphhchcc 301- 350ddd...dddd.........:..dd.....:.ddd.....:.........: 351- 351. p X S my_fasta_file G 1KFL_G X p 351- 351. The seq2struc alignment: my_fasta_file ---> 2D4W_A align_len=507 ene=-32.00 identity=2.761341 hpc_err=28.599605 size_err=0.000000 ins=4 del=202 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhh phhhhccchphhhh phpph X BBXXX XXXXXXXXXBBBBB XXXBB -M-----TWLPL------NPIPLKDRVSMIFL--------QYGQI----- my_fasta_file + ++++ ++ ++ +++ ++ + + ADYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQI 2D4W_A XXBBBBBBBXXXBBBBBBBXXXXXBBBBBBBBXXXXXXXXXXXBBXAAAA hchhhhhcppppppchhhhchppchhpppphchcphhhchphhchphcph 1- 50d.ddddd..:..dddddd.:.........:..dddddddd.....ddddd 51- 100.........:.........:.........:.........:.........: chhcp hhhhhc cpphcphhhhpphhhhhhch BBXXX BBBBBB XXXXBBBBBXXXXBBBBBBX ----------------DVIDG--AFVLID-KTGIRTHIPVGSVACIMLEP my_fasta_file ++ | + + ++ +++ + + + WNNVREVVGLALTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIV 2D4W_A AAAAAAAAAAAAAAXXXXXXXBBBBBBBBXXXXXBBBBXXXXXXXXXBBX hpphcchhphhhpcpphphcchhhhphpppccphhhhccpppchhhphhh 51- 100dddddddddddddddd...:.dd......d.........:.........: 101- 150.........:.......iiii........:.........:.........: ppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchhhphchh XXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAAAAAAAA GTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLA my_fasta_file + + +++ +++ + ++|+++ ++++ + +| + + + WQDTRTQKIVDELGGDE----GAEKYKSIVGLPLATYFSGPKIKWILDNV 2D4W_A XXXXXXAAAAAAAAXXX XXXXXAAAAXXXXXXXXAAAAAAAAAAAX hpcpcppchhcchppcc phcchcphhphhhhphhpphchchhhcph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hccchchch hcchhchch pch hhhc XXAAAAAAA AAAAAAAAA XXX AAAA LDEDLRLKV-------VRKMFELRF------GEP---APAR--------- my_fasta_file + + + + + + |+ +++ EGAREKAEKGDLLFGNTDTWVLWNMTGGTEGGVHVTDVTNASRTMLMDLD 2D4W_A XXAAAAAAAXXBBBBXAAAAAAAAAXXXXXXXXXBBBAAAAXXXXXBBXX cphccchccpchhhpppcphhhhphppppcpphhhpchpphpcphhhchc 151- 200.........ddddddd...:.....dddddd...ddd..:.ddddddddd 201- 250.........:.........:.........:.........:.........: cphcph cp AAAAAA AA -----RSVEQL-------------------------------------RG my_fasta_file +++ TLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPGVPIAGILGDQ 2D4W_A XXBBXAAAAAAXXXXXXXXXBBBXXBBBBBBXXXXXXXXXXBBBBBBBAA phphccchhhchphhhphhhchcpppchhphpchcphhhphhhhphhpcp 201- 250ddddd....:.ddddddddddddddddddddddddddddddddddddd.: 251- 300.........:.........:.........:.........:.........: hcppch chph hhh hcphphphppcc hchc AAAAAA AAAA AAA AAAXXXXXXXXX XXXX IEGSRV---RATY------ALL------AKQYGVTWNGRR------YDPK my_fasta_file +++ ++ ++++ +++ + + |++ + +++ QAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGD 2D4W_A AAAAAAXXXXXXXBBBBBBXXXBBBBBBXXXXXXXXXXXXBBBBBBXXXX phhphpphhhchpphcpphpppphhhhppppcchhpcpphhpphhhchpc 251- 300......ddd:...dddddd:..dddddd.:.........:dddddd...: 301- 350.........:.........:.........:.........:.........: chc cpcphpphhphh pphhhphpchhhhhhphhhh hp XXX XXXAAAAAAAAA AAAAAAAAAAAAAAXXXXXX BB DWE--------KGDTINQCISAA----TSCLYGVTEAAILAAGYAPA-IG my_fasta_file + + ++ ++++ +++ + + | + |++ + +++| + APAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFV 2D4W_A XXXBBBBBBBBXXXAAAAAAAAAXXXXXXXXXXXAAAAXXXXXXXXXBBB hhhhhhhcpphhhppphhphhccphphhcchhchchhhpchpcppphhhh 301- 350...dddddddd........:...dddd..:.........:.......d.: 351- 400.........:.........:.........:.........:.........: hhh ppchhp hhhchhchhchcphhhchh BBB XXXXXX AAAAAAAAAXAAAAAAAAA -----------------FVH-TGKPLS----FVYDIADIIKFDTVVPKAF my_fasta_file + + + +++ ++ +| | PAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAM 2D4W_A XXXXXXXXXXXXXXXXXBBBXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA hhhpphhhhhhchchcphhhphpchhpcphhhchhhchphhppcchhchh 351- 400ddddddddddddddddd..:d......dddd........:.........: 401- 450.........:.........:.........:.........:.........: chhc c phpchccchchhhcchh cppcphhchhhh AAAA X XXXXXXAAAAAAAAAAA AAAAAAAAAAAA EIAR----R-----NPGEPDREVRLACRDIF-------RSSKTLAKLIPL my_fasta_file + +++ + ++ ++|+ ++ |+|++ NADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAY 2D4W_A AAAAXXXXXBBBBBXXXXXXAAAAAAAAAAAXXXBBBBXXXXAAAAAAAA phcpphchpchchcpphhhpchhhphphcphphchhchchhcpphhphhh 401- 450....dddd.ddddd.....:.........:.ddddddd.:.........: 451- 500.........:.........:.........:.........:.........: hcchhhhpchp hh hhhcc hphhhhhhhhphp AAAAAAXXXXX XX XXXXX XXXXXXXXXXXXX IEDVLAAGEIQ-------PP-----APPED-------AQPVAIPLPVSLG my_fasta_file + ++++ +|++ + ++ ++ AAGIAVGFWKGEQDVIDNWAEDKRWSPSMESGERERLYRNWKKAVTKTME 2D4W_A AAAAAAXXXXXAAAAAAAXXBBBBBXXXXXAAAAAAAAAAAAAAAAAAAA hhphhhphhcpcpchhcphhcccchphphcppcccchhcphcchhpcphc 451- 500.........:.ddddddd.:ddddd....:ddddddd..:.........: 501- 507....... chphcpp XXXXXXX DAGHRSS my_fasta_file + + + WVDEDVE 2D4W_A AAAXXXX hhccchc 501- 507....... The seq2struc alignment: my_fasta_file ---> 2Q2E_B align_len=606 ene=57.00 identity=4.125413 hpc_err=24.587458 size_err=0.000000 ins=0 del=301 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hhhccch XBBXXXXX XXXXXXX ---------------MTWLPLNP--------------------IPLKDRV my_fasta_file + |+ + ++ ++ KKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILP 2Q2E_B XXXXXXXXAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAAAAAAXXXXXXX ccpcphphhchhccpcphhphcphhcphhpphcchhcphhchhcchphhh 1- 50ddddddddddddddd....:...dddddddddddddddddddd......: 51- 100.........:.........:.........:.........:.........: ph hhhphp phch BB BBBXXX BBBB --SM--IFLQYG---QIDV------------------------------- my_fasta_file + +++ +|++ DILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSR 2Q2E_B BBBBXXBBBXXXBBBBBBBXXXXXXXXXXAAAAAXXXXXXXXXXXXXXXX chhhphccpphchhphhhccpphphhccphhchhhchhhppchhhhcppc 51- 100dd..dd...:..ddd....ddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: hcphhhhh ccpphcphhh hpph XXXBBBBB BXXXXBBBBB XXXX ----------------IDGAFVLI-DKTGIRTHIP----------VGSV- my_fasta_file ++|+ ++| || + + ++ GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDI 2Q2E_B XAAAAAAAAAAAAAXXXXXBBBBBXXXXXXBBBBBXXXXXXXXXXXXXXB pppphphphhhhhhphphpchpchhpcpphphhhhhhchhhpppppchch 101- 150dddddddddddddddd...:....d....:.....dddddddddd....d 151- 200.........:.........:.........:.........:.........: hh hhhc hppchp hhhhchhhp hpphhhh hp BB BBBB XXXXXX AAAAAAAAA XXXBBBB BX AC----------IMLE-------PGTRVS-HAAVRLAAQ-VGTLLVW-VG my_fasta_file ++++ + + + ++|+| + + ++ LVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITL 2Q2E_B BBXXXXXXXXXXBBBBXXXXXXXXXXXXXAAAAAAAAAAXXXXBBBBXXX hhcchcchhchhppphchchchhhhcpccpphhchhchphhhphhhchph 151- 200..dddddddddd....ddddddd......d.........d.......d.: 201- 250.........:.........:.........:.........:.........: chphchhh ppphpphcpcchhhphc hhh XXXXBBBB XXXXXXXAAAAAAAAAA AAX EAGVRVYA--------------SGQPGGARSDKLLYQAK--------LAL my_fasta_file ++++ +++ ++|+++ + +++ +++ || IDPDGNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTERQKLAP 2Q2E_B XXXXBBBBXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAXXXXXXXXXXX hchcppcchhcchpcchhchhcchhhhhcphchpphhchhhhpccpchhh 201- 250........dddddddddddddd.......:.........dddddddd..: 251- 300.........:.........:.........:.........:.........: ccchchchh cchh chchpch XAAAAAAAA AAAA AAAAXXX DEDLRLKVV----------------------RKMF--------ELRFGEP my_fasta_file ++ ++ + + ++ + FLRYSFCKIGLLTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIM 2Q2E_B XAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXXXXXXXXXX hhchphhchphhphcchhchhphchchchhhhpchchcchhchhcchchh 251- 300.........dddddddddddddddddddddd....dddddddd......: 301- 350.........:.........:.........:.........:.........: hhhccphcphcphcpp chchph hh hhcphphph AAAAAAAAAAAAAAAA AAAAAA AA AAAAXXXXX APARRSVEQLRGIEGS---RVRATY---AL-----------LAKQYGVTW my_fasta_file || + + ++++ + +| |+ ++++++ APPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMA 2Q2E_B XAAAAAAAAAAAXXXXBBBXXXXXXBBBXXBBBBBBBBBBBXXXXXXXXX hhhpchhphhpcchhhcphcccpphchhhpppcchhhhppphhhhchphh 301- 350.........:......ddd:.....ddd.:ddddddddddd........: 351- 400.........:.........:.........:.........:.........: pp cchchcchccpcphpphhphhpphhhphpchhhhhhphhhh h XX XXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXX B NG-----RRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPA-I my_fasta_file +| ++++++++ + ++ + ++++++ +| + ++ | ++ + YGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGG 2Q2E_B XXBBBBBXXXXXXXXXXXXAAAAAAAAXXXXXXXXXXXXXXXXXXXXXBB hppphhcccchphhchhpchhhhhpppphhpphhhcchchcphphpphpp 351- 400..ddddd..:.........:.........:.........:........d: 401- 450.........:.........:.........:.........:.........: phhh ppchhp hhhchhchhchcphhhchhchhc BBBB XXXXXX AAAAAAAAAXAAAAAAAAAAAAA GFVH-----------TGKPLS------FVYDIADIIKFDTVVPKAFEIAR my_fasta_file | + +| ++ +++ |+ + + GIPVGPVILLIHVASINVPFTSESKDAIADIPVIKEEIDLAIKEVARKLK 2Q2E_B BBBBXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAA phhhphhhhhhhhhphphhhppcpcchhhchhhhccchchhhcchhcchc 401- 450....ddddddddddd....:.dddddd..:.........:.........: 451- 500.........:.........:.........:.........:.........: cph pchccchc hhhcchh XXX XXXXAAAA AAAAAAA RNP----GEPDREVR----------------LACRDIF------------ my_fasta_file ++ ++ | + + HYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMG 2Q2E_B XXXAAAAXXXXAAAAXXXXXXXXXXXXXXXXAAAAAAAXXXBBBBBBBXX hhhpcppphccccccchhhpchhhchhhchhhhhccchhchphhhhchhp 451- 500...dddd..:.....dddddddddddddddd.......dddddddddddd 501- 550.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file NLLVHRVIKNNGDGTVDVAIKVKNFGTSAYSFRVHEMLPCKVSGAKPEPK 2Q2E_B XXXXXBBBBBBBXXXXXBBBXXBBXXXXXXXXXBBBXXXXBBBXBBBXXX phhhhchhcpppcpphchhhchcphppphhphchhchhhhchpphchchc 501- 550dddddddddddddddddddddddddddddddddddddddddddddddddd 551- 600.........:.........:.........:.........:.........: cpp cphhchhhhhcchhhhpchphhhhhcchphhhhhh hhphpc AAA AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXX XXXXXX RSS----KTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPL--PVSLGD my_fasta_file ++ + ++|+ ++ +++ + ++ +| ++++ +| ++++ VVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLPQLIVEGIEEE 2Q2E_B XXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXBBXXXXXX hhphppchchhhchphphpppchhphchcphpccchpchhphhhcphccc 551- 600...dddd..:.........:.........:.........:..dd.....: 601- 606...... hphcpp XXXXXX AGHRSS my_fasta_file ++ + LVTGAK 2Q2E_B XXXXXX hhpphc 601- 606...... The seq2struc alignment: my_fasta_file ---> 2IX5_C align_len=417 ene=-88.00 identity=4.076739 hpc_err=36.930457 size_err=0.000000 ins=2 del=112 begin1=0 begin2=0 1- 50.ii......:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ ++ | + +++ ++++++ +++++ ++ +| +++++++ K--SSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRK 2IX5_C X XXXXXXXXXXAAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAA c pphhchhhhchphhhhphphhpphhhhppchhhhpchhphccphhcc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhh hpchphchhhppphpph BBBBBXXXXXXAAAAAAAAAXXXBBBB BXXXXXBBBBXXXXXXX CIMLEPGTRVSHAAVRLAAQVGTLLVW------VGEAGVRVYASGQPGGA my_fasta_file + +++ |+ + + + |+||+ +++|+||++ KVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLS 2IX5_C AAAAAAAAAXAAAAAAAAAAXXXXXXXAAAAAAXXXXXXXXXXXXXXXXX chcchhccchhhhhpchhcchchhhhhphchphhphhppphcphphhphp 51- 100.........:.........:.......dddddd......:.........: 101- 150.........:.........:.........:.........:.........: cpcchhhphchhh ccchchchhc chhchchpchhhhccphcphcp AAAAAAAAAAAAX XAAAAAAAAA AAAAAAAXXXAAAAAAAAAAAA --RSDKLLYQAKLAL-DEDLRLKVVR--KMFELRFGEPAPARRSVEQLRG my_fasta_file + ++ + ++ + + ++ +| | + + ++ + +++++ ITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLA 2IX5_C AAAAAAAAAAAAAAXAAAAAAAAAAAXXAAAAAAAAXXAAAAAAAAAAAA hphphhhphchhchchphpphhhhhpphphhphhhhppchpccchhhphh 101- 150dd.......:.....d...:......dd.:.........:.........: 151- 200.........:.........:.........:.........:.........: hcpp AAAA ---------------------------------------------IEGS- my_fasta_file +++ QLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADL 2IX5_C XXXXXBBBBXXXXXXXXXXXXXXXBBBBBXXBBBBBBBBBBBBXXXXXXB phpphhhhhhpchcpppchpphppphpchcpphchpppcchhpppphhch 151- 200ddddddddddddddddddddddddddddddddddddddddddddd....d 201- 250.........:.........:.........:.........:.........: chchp hhhhh cphphphppcc AAAAA AAAAA AAXXXXXXXXX -------RVRAT-------YALLA-----KQYGVTWNGRR---------- my_fasta_file + + ++ + +++ ++ LIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVF 2IX5_C BBBBBBBXXXXXBBBBBBBXXXXXBBBBBXXXXXXXXXXXBBBBBBBBBB hhhhhcpppppphpphhhccchhphchpchhpchphchhpppchhhpphh 201- 250ddddddd..:..ddddddd:....ddddd:.........:dddddddddd 251- 300.........:.........:.........:.........:.........: hchcchccpc phpphhphhpphhhphpchhhhhhphhhhh XXXXXXXXXX AAAAAAAAAAAAAAAAAAAAAAAXXXXXXB --YDPKDWEKGD--------TINQCISAATSCLYGVTEAAILAAGYAPAI my_fasta_file + + + + + +| + + + + ++ ++++ VPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERK 2IX5_C BBXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXB hhcccchhphpphpcppchhhhpchhhhhphhphphphhchhhchhcccc 251- 300dd.......:..dddddddd.........:.........:.........: 301- 350.........:.........:.........:.........:.........: p hhhppch hphhhchhchhchcphhhchhchhccphpchccchchhh B BBBXXXX XXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAAA G-FVHTGKP--LSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLAC my_fasta_file + +++ + ++ ++ +++++++ ++ +++ +| + +++ + QFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLG 2IX5_C BXXBBXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXAAAAAAA phphhhhhhphpppchhphhpphphhhhhphchhchhcppphphpphphp 301- 350.d.......dd........:.........:.........:.........: 351- 400.........:.........:.........:.........:.........: cchhcppcphhchhhhhcchhhhpchphh hhhcch ph AAAAAAAAAAAAAAAAAAAAAAXXXXXXX XXXXXX XX RDIFRSSKTLAKLIPLIEDVLAAGEIQPP-----------APPEDA--QP my_fasta_file + | + ++++ +++++++++++ + | + ++ KAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDIN 2IX5_C AAAAAAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAAXXXXXXAAAA chhhppchccphphpcchhpppphhhchhhhchhhchchhhphcpphchp 351- 400.........:.........:.........ddddddddddd......dd.: 401- 417.........:....... hhhhhhhphpchphcpp XXXXXXXXXXXXXXXXX VAIPLPVSLGDAGHRSS my_fasta_file + ++++++|+| ++ TLVTGREVTGIASFKPA 2IX5_C AAAAAAAAAXXXXXXXX phhppcchpphhphchh 401- 417.........:....... The seq2struc alignment: my_fasta_file ---> 2OZ3_B align_len=396 ene=-124.00 identity=4.040404 hpc_err=42.676768 size_err=0.000000 ins=0 del=91 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhhphhhhccchphhhhphpphchhcphh X BB XXXXXXXXXXXXBBBBBXXXBBBBXXXBB -----M-------TW------LPLNPIPLKDRVSMIFLQYGQIDVIDGAF my_fasta_file + + + +++ ++ ++ ++ ++ + + ++ SLSIPTIKQVRAFVLRGGGADYHDQGDGHWIDDHISTPMGKYPEYRQSRR 2OZ3_B XXXXXXBBBBBBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX phphhphcphchhhhcppphchhcppcphhhcchhpphhpchhchcppcc 1- 50ddddd.ddddddd..dddddd........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhccpph cphhhhpph hhhhhchppchphhhhc hhhphpphhh BBBBXXXX BBBBBXXXX BBBBBBXXXXXXAAAAA AAAAXXXBBB VLIDKTGI---RTHIPVGSV-ACIMLEPGTRVSHAAVR--LAAQVGTLLV my_fasta_file + ++ +++ + + + + + + +| + + + + ++|++ + SFGINVLGTLVVEIEASDGNVGFAVTTGGEPAAYIVEKHLARFLEGARVT 2OZ3_B XXXXXXXXBBBBBBBBXXXXBBBBBBBXAAAAAAAAAAXXAAAAXXXXXX phphphhpphhhchchpcpphphhhppppchhhhhhcchhhchhcphchp 51- 100........ddd........:d........:........dd.........: 101- 150.........:.........:.........:.........:.........: h hpchphchhhppphpphcpcchhhphchhhccchchch hcch B BXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAA AAAA W--VGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKV---VRKM-- my_fasta_file + ++++ ++++++++ ++++ + + |||+ +| +++ |+ DIERIWDQMYNSTLYYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLG 2OZ3_B XAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAXXXAAAAXX chcchhcphhppphhhpccphhhpphpphchhhhchhpchccchhhphhp 101- 150.dd......:.........:.........:.........:.ddd....dd 151- 200.........:.........:.........:.........:.........: hchch pchhhhccp hcphcphcppchchph AAAAA XXXAAAAAA AAAAAAAAAAAAAAAA FELRF-------GEPAPARRS-------------VEQLRGIEGSRVRATY my_fasta_file ++ |+ |++ + + + ++ ++ GAVRDELQFYATGARPDLAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELA 2OZ3_B XXXXXBBBBBBBXXXAAAAAAXXXXBBBBBXXXXXXXAAAAAAAAAAAAA phhccchphhhpphchchhpchphhppchhhhhphpcpccphccphcchh 151- 200.....ddddddd.......:.ddddddddddddd.....:.........: 201- 250.........:.........:.........:.........:.........: hhhhcphphphppcchchcchccpcphpphhp hhpphhhph AAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAA AAAAAAAAA ALLAKQYGVTWNGRRYDPKDWEKGDTINQCIS---------AATSCLYGV my_fasta_file + ++ +++++|+++ + +++ ++|++++++ +|++ +++ TMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKWIEEALPPDDYW 2OZ3_B AAAAAAXXXXBBBBBXXXXXXAAAAAAAAAAAXXXXXXBBBXXXXXXXAA phccchphchhhhhchhhphchphhpchhcphcchphchhcchhhhcchh 201- 250.........:.........:.........:..ddddddddd........: 251- 300.........:.........:.........:.........:.........: pchhhhhhphhhhhphhhppchhphhhchhch hc hc AAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAA AX AA TEAAILAAGYAPAIGFVHTGKPLSFVYDIADI-------------IK-FD my_fasta_file +|+ ++++ ++ ++++ + + + ++ GYAELRRNAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVT 2OZ3_B AAAAAAAAXXXXXBBBBXXXXXAAAAAAAAAAXXXXXBBXXXXXXXXAAA phhchccphhpphhhpppchchpchphchhhchphhchhphchphhpphp 251- 300.........:.........:.........:..ddddddddddddd..d.: 301- 350.........:.........:.........:.........:.........: phhhchhchhc cp hpchccchchhhc chhcp pcphhchhh AAAAAAAAAAA XX XXXXXAAAAAAAA AAAAA AAAAAAAAA TVVPKAFEIAR-RN--PGEPDREVRLACR---DIFRS----SKTLAKLIP my_fasta_file +++ + ++ + +++ + + ++++ +++ ++++ ELLKISALADAHNALVVPHGSSVYSYHFVATRQNSPFAEFLMMAPKADQV 2OZ3_B AAAAAAAAAAAXXXBBXXXXXAAAAAAAAXXXXXXXXBBBBXXXXXXXXX chhchphhhchhphhhhhhppphhphhhhhpcppphhhchhhhhhchcph 301- 350.........:.d..dd...:.........ddd.....dddd........: 351- 396.........:.........:.........:.........:...... hhcchhh hpchphhh hhcchphhhhh hhhphpchphcpp AAAAAAA XXXXXXXX XXXXXXXXXXX XXXXXXXXXXXXX LIEDVLA--AGEIQPPA---PPEDAQPVAIP--LPVSLGDAGHRSS my_fasta_file ++ + + + ++++ + ++||+ + +|+++++++ + VPMFHPQLLGEPVPENGRMRLSRLDQPGFGVTLNPECQLHRPYTHE 2OZ3_B XXXXXXXBBXXXXXXXXBBBXXXXXXXXXXXBBXXXXXXXXXXXXX hhhhhhphhpchhhcppchchpchcphphphphphchphhchhphc 351- 396.......dd:.......ddd.........:.dd......:...... The seq2struc alignment: my_fasta_file ---> 1I5P_A align_len=633 ene=139.00 identity=1.579779 hpc_err=27.646130 size_err=0.000000 ins=0 del=328 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhphpp hc hhcphh XBBXXXXXXXXXXXXBBBBBXXXB BB BXXXBB MTWLPLNPIPLKDRVSMIFLQYGQ----ID--------------VIDGAF my_fasta_file | + + ++++++ ++ ++++ + + + MNNVLNSGRTTICDAYNVVAHDPFSFEHKSLDTIQKEWMEWKRTDHSLYV 1I5P_A XXXXXXXXXXXXXXXXXXXXXXXXAAAAXXAAAAAAAAAAAAAAXXXXXX hpphhpppcpphhchhphhhhchhphchcphcphpcchhchccpchphhh 1- 50.........:.........:....dddd.:dddddddddddddd.....: 51- 100.........:.........:.........:.........:.........: hh hccpphcp hhhhpp BB BBXXXXBB BBBXXX VL-------------IDKTGIRT--------HIPVGS------------- my_fasta_file + ++|+|+ ++ APVVGTVSSFLLKKVGSLIGKRILSELWGIIFPSGSTNLMQDILRETEQF 1I5P_A XXAAAAAAAAAAAAAXXXXXXXXAAAAAAAAXXXXXXAAAAAAAAAAAAA hhhhpphpphhhcchpphhpcchhpchhphhhhppppphhpchhccpcph 51- 100..ddddddddddddd....:...dddddddd......ddddddddddddd 101- 150.........:.........:.........:.........:.........: hhhhh hchppchphhhhchhhphpphhhhhp XBBBB BBXXXXXXAAAAAAAAAXXXBBBBBX -VACIM------------LEPGTRVSHAAVRLAAQVGTLLVWVG------ my_fasta_file +++ + ++++ ++ ++++++ +++|++ + LNQRLNTDTLARVNAELIGLQANIREFNQQVDNFLNPTQNPVPLSITSSV 1I5P_A AXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAA hppchppcphhchphchhphphphcchppphcphhphppphhhhphppph 101- 150d.....dddddddddddd.:.........:.........:....dddddd 151- 200.........:.........:.........:.........:.........: chphchhhp pphpphcpcchhhp hchh h XXXXBBBBX XXXXXXAAAAAAAA AAAA X ----------EAGVRVYAS----------GQPGGARSDKLLYQ-AKLA-L my_fasta_file + +++ +++++ ++ + + | + NTMQQLFLNRLPQFQIQGYQLLLLPLFAQAANMHLSFIRDVILNADEWGI 1I5P_A AAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAXAAAAXX pphpphhhpchhphphpphphhhhhhhhphhphhhphhcchhhphcchph 151- 200dddddddddd.........dddddddddd:.........:...d....d: 201- 250.........:.........:.........:.........:.........: c cchchchhcchhchchpchhhhccph cphcphcppchch X AAAAAAAAAAAAAAAAXXXAAAAAAA AAAAAAAAAAAAA D-----EDLRLKVVRKMFELRFGEPAPARRSV-----EQLRGIEGSRVRA my_fasta_file ++ ++++ ++++ ++++ + +++ +++++++ + + SAATLRTYRDYLRNYTRDYSNYCINTYQTAFRGLNTRLHDMLEFRTYMFL 1I5P_A XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXBBBAAAAAAAAAAAAA phhphcphcchhcphpcchpphhhpphpphhcphppchhchhchcphhhh 201- 250.ddddd...:.........:.........:..ddddd..:.........: 251- 300.........:.........:.........:.........:.........: p hhhhhcp h phphpp cchchcchc cpcphpphhph A AAAAAAA X XXXXXX XXXXXXXXX XXXAAAAAAAA T-YALLAKQ------Y--GVTWNG---RRYDPKDWE---KGDTINQCISA my_fasta_file + +++ + ++ ++ + | + + + ++ ++ NVFEYVSIWSLFKYQSLMVSSGANLYASGSGPQQTQSFTAQNWPFLYSLF 1I5P_A AXAAAAAAAXXXXXXXBBXXXXXXBBBXXXXXXXXXBBBXXXAAAAAAAA phhchhphhphhchpphhhppphphhhpppphppppphphpphhhhhphh 251- 300.d.......dddddd.dd.:....ddd..:......ddd:.........: 301- 350.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file QVNSNYILSGISGTRLSITFPNIGGLPGSTTTHSLNSARVNYSGGVSSGL 1I5P_A XXXXXXXBBBBBBBBBBBBBBXXXXXXXBBBBBBBBBBBBBBXXXXXXXX phppphhhpphpppchphphhphpphhppppphphpphchphppphppph 301- 350dddddddddddddddddddddddddddddddddddddddddddddddddd 351- 400.........:.........:.........:.........:.........: hpphhhph pch hhh hhp AAAAAAAA AAA AAA AXX --------------ATSCLYGV-----TEA-----AIL-----AAG---- my_fasta_file ++ |+ + + + ++ IGATNLNHNFNCSTVLPPLSTPFVRSWLDSGTDREGVATSTNWQTESFQT 1I5P_A BBXXXXXXXBBBBXXXXXXXXXBBBBBXXXBBBBBXXXBBBBBXXXBBBB hphpphphphphpphhhhhpphhhcphhcpppcccphhpppphppcphpp 351- 400dddddddddddddd.....:..ddddd..:ddddd...ddddd...dddd 401- 450.........:.........:.........:.........:.........: hhhhhph hh pp chhphhhc XXXXBBB BB XX XXXXAAAA YAPAIGF-------VH---TG---------KPLSFVYD------------ my_fasta_file + + +++ ++ + + ++++ TLSLRCGAFSARGNSNYFPDYFIRNISGVPLVIRNEDLTRPLHYNQIRNI 1I5P_A XXXXBBBXXXXXXXBBXXXXXBBBBBBBBBXXXXAAAAXXXXXXXXXXXX phphchphhphcpppphhhchhhcphpphhhhhcpcchpchhhhpphcph 401- 450.......ddddddd..ddd:.ddddddddd........dddddddddddd 451- 500.........:.........:.........:.........:.........: hhchhchcphh hchh chhcc phpchc cchc AAAAAXAAAAA AAAA AAAAX XXXXXX AAAA IADIIKFDTVV--------PKAF----EIARR----NPGEPD----REVR my_fasta_file +++++ + +|++ ++ +| + + ESPSGTPGGARAYLVSVHNRKNNIYAANENGTMIHLAPEDYTGFTISPIH 1I5P_A XXXXXXXXXXXBBBBBBBBXXXXBBBBXXXXXBBBBXXXXXXBBBBXXXX cphppphpphchhhhphhpccpphhhhpcppphhhhhhcchpphphphhh 451- 500.........:.dddddddd:...dddd..:..dddd...:..dddd...: 501- 550.........:.........:.........:.........:.........: hh hcchh cppcphhc hhhh hcc AA AAAAA AAAAAAAA AAAA AAA LA--CRDIF----RSSKTLAK----LIPL--------IED---------- my_fasta_file + + ++ + ++ ++++ + ATQVNNQTRTFISEKFGNQGDSLRFEQSNTTARYTLRGNGNSYNLYLRVS 1I5P_A XXBBXXXXXBBBBXXXXXXXXBBBBXXXXBBBBBBBBXXXBBBBBBBBBB hpphppppcphhpcchppppcphchcppppphchphcppppphphhhchp 501- 550..dd.....dddd......:.dddd....dddddddd..:dddddddddd 551- 600.........:.........:.........:.........:.........: hhhh pc hphhhhhcc hp h hhh AAAX XX XXXXXXXXX XX X XXX VLAA-------GE--------IQPPAPPED--AQ--P----------VAI my_fasta_file + ++ + +++++ + + +++ SIGNSTIRVTINGRVYTVSNVNTTTNNDGVNDNGARFSDINIGNIVASDN 1I5P_A XXXXBBBBBBBXXBBBBBBBBXXXXXXXXXBBXXBBXBBBBBBBBBBXXX phpppphchphppchhphpphppppppcphpcpphchpchphpphhhpcp 551- 600....ddddddd..dddddddd........:dd..dd.dddddddddd..: 601- 633.........:.........:.........:... h hhhphp chphcpp X XXXXXX XXXXXXX P---------LPVSLG----------DAGHRSS my_fasta_file + |++ ++ ++ +++ TNVTLDINVTLNSGTPFDLMNIMFVPTNLPPLY 1I5P_A XBBBBBBBBBXXXXXXBBBBBBBBBBXXXXXXX pphphchphphpppphhchhphhhhhpphhhhh 601- 633.ddddddddd......dddddddddd...:... The seq2struc alignment: my_fasta_file ---> 1J5P_A align_len=306 ene=-59.00 identity=4.575163 hpc_err=33.660132 size_err=0.000000 ins=63 del=1 begin1=0 begin2=0 1- 50.........:.........:.........:.ii......:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX -MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file ++ ++ +++ ++ + + |+ | ++|++| + ++ + HHMTVLIIGMGNIGKKLVELGNFEKIYAYDR--ISKDIPGVVRLDEFQVP 1J5P_A XXXBBBBBXXXAAAAAAAAAXXXXBBBBBXX XXXXXXXXBBXXXXXXX hhhphhhhphpphpcchhchpphcchhhhcc hpcchhphhchcchphh 1- 50d........:.........:.........:.........:.........: 51- 100......i..:.........:.i..iiiii:........i:.....iiiii hhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcch BBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAA ACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKL my_fasta_file ++ +++ + + | +|| + ++ + + ++| + + + SDVSTV-VECASPEAVKEYSL-QI-----LKNPVNYII-ISTSAF----- 1J5P_A XXXXBB BBXXXAAAAAAAAA AA XXXXXBBBB XXXXXX pchpph hchhphchhcchph ph hcphhphhh hppphh 51- 100.........:.........:.........:.........:.........: 101- 150iiiiiii..i.........:.........:.........:.........: hhphchhhccchchchhcchhchchpchhhhccphcphcphcppchchph AAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAA LYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATY my_fasta_file | ++ + + + + + + | + + ++ + -------AD-EVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVKN 1J5P_A XX AAAAAAAAAAAAXXXXBBBXXXXXXXXAAAAAAAXXXBBB hc chhccchhpchcpphhchhhhpphhpphchhpphcchhcp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhp AAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXX ALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAG my_fasta_file + + +++ ++|+ +| ++ + + + ++ + ++ VRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGLIVGF 1J5P_A BBBBBBBXXXXXXXXXXXXBBBBBBXAAAAAAAXXXXXAAAAAAAAAAXX hchcphchhcphphchcpcphhhcpphcchpchhhcphphhpphphhhph 151- 200.........:.........:.........:.........:.........: 201- 250.........:.....iiiiiiiii.iiiiiiiiiiiii.:.........: hhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchch XXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAA YAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRL my_fasta_file ++ + | ++ ++ ++ + + + EKVKVTIVADPAMDH---------N-------------IHIVRISSAIGN 1J5P_A XXBBBBBBBXXXXXX X BBBBBBBBXXXB cchchphhhchhhch p hhhhchpphhpp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:....iiiiiiiiiiiiiiiiii.......: hhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpc AAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXX ACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGD my_fasta_file ++ |+ ++ +++++++ + + ++ ++ YEFKIENIPSPENPKTSMLTVYSI------------------LRTLRNLE 1J5P_A BBBBBXXXXAAAAAAAAAAAAAAA XXXXXXAX hchchcphhphcphcpphhphhph hcphcphc 251- 300.........:.........:.........:.........:.........: 301- 306...... hphcpp XXXXXX AGHRSS my_fasta_file + ++ SKIIFG 1J5P_A XXBBBB pchhhp 301- 306...... The seq2struc alignment: my_fasta_file ---> 2W9Z_A align_len=305 ene=-96.00 identity=6.229508 hpc_err=39.672130 size_err=0.000000 ins=59 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file |++ + ++ + ++ + +| L--LNDRVLRAMLKA-----EET----CAP------SVSY-----FKCV- 2W9Z_A X AAAAAAAAAAAA AAX XXX XXXA AAAX h hpcchhchhhch ccp hhh phph hchh 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.........:...iii...:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + ++ +++ |++ + |+ ++ +++ + + +|+ -----QKEVLPSMRKIVATWMLE---VCEEQKCEEEVFPLAMNYLDRFLS 2W9Z_A XXXXXAAAAAAAAAAAAA AAAAXXXXXXAAAAAAAAAAAAAX pcchhhphcchhhphhhc hhccpchccchhhhhhphhcchhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++++ + |++++ ++ +++ ++ ++ + + ++ ++ LEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQM 2W9Z_A XXXXXXXXAAAAAAAAAAAAAAAAXXXXXXAAAAAAAXXXXXXAAAAAAA hchhccpchphhphphhhhhpchccphhhphcchhhhpcpphchcchhph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +| +++ ||+++ |+| + ++++ + ++++ + +++++ | + ELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCA 2W9Z_A AAAAAAAXXXXXXXXXAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAA chhhhpchchphhhhphhchhchhhpchhchccpcphhcchhpphhhhhh 151- 200.........:.........:.........:.........:.........: 201- 250...iiiii.:.........:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ +++++ + + | + ++|++++ + + + + ++|+ TDV-----KFISNPPSMVAAGSV-VAAVQGLNLRSPNNFLSYYRLTRFLS 2W9Z_A XXX AAAAXXAAAAAAAAA AAAAAAAAAAXXXXXXXXXXAAAAAA pch chhpphhphhhhpph hhhhpphphcphpphhphhchpchhp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiiiiiiiiiiiiii....: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++++ + +++|++++ +++ ++ || | RVIKCDPDCLRACQEQIEALLES----------------------SLRQA 2W9Z_A AAXXXXAAAAAAAAAAAAAAAAA AAAAA chhchchchhchhpcphchhhcp phcph 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file + + QQNMD 2W9Z_A AXXXX ppphc 301- 305..... The seq2struc alignment: my_fasta_file ---> 1ZY8_H align_len=474 ene=-22.00 identity=2.742616 hpc_err=32.278481 size_err=0.000000 ins=0 del=169 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhph hhhccchphhhhphpphc h X BBXXXXX XXXXXXXBBBBBXXXBBB B ---M------TWLPLNP-------IPLKDRVSMIFLQYGQID------V- my_fasta_file + +++++ ++ ++ + + + ADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGC 1ZY8_H XXXXBBBBBBBBXXXXXAAAAAAAAAAXXXXBBBBBXXXXXXAAAAAAXA hcphhchchphhppphpphhhhhchhphphcphhhccpcphppphhphph 1- 50ddd.dddddd.......ddddddd.....:.........:..dddddd.d 51- 100.........:.........:.........:.........:.........: hcphhhhhccpphcphhhhpphhhhhhchppchp XXXBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXX ----------------IDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVS my_fasta_file +| ++ + ++ ++ + ++++ + + IPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALT 1ZY8_H AAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAA hhpchhhppphhhhhhhpcchhpcphchpchchphcchhcpcpphhchhp 51- 100dddddddddddddddd...:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hhhhchhhp h pphhhhhpchph c h AAAAAAAAA X XXBBBBBXXXXX B B HAAVRLAAQ-------V------GTLLVWVGEAGV----------R---V my_fasta_file ++ +| +| + + + + ++|+ + + GGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGS 1ZY8_H AAAAAAAAAXXXBBBBXBBBBBBXXBBBBBXXXXXBBBBBBBBBBBXXXB pphhhhhcppchhhhpphpchppcpphphpchcpppphhcpcphhhhppp 101- 150.........ddddddd.dddddd......:.....dddddddddd.ddd: 151- 200.........:.........:.........:.........:.........: hh ppphpph cpcc hhhphch hhccchchchhcchh BB XXXXXXX AAAA AAAAAAA AXXAAAAAAAAAAAA YA-----SGQPGGA---RSDK-LLYQAKL-----ALDEDLRLKVVRKMF- my_fasta_file + + ++ + + +|+ ++ + ++++++++++++ EVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 1ZY8_H BBXXXXXXXXXXXXBBBAAAAXXXXXXXXBBBBBXXXAAAAAAAAAAAAX chphhhphphcccphhpppphhphcchhcchhhhphphhphchpphhpch 151- 200..ddddd..:....ddd..:.d.......ddddd.....:.........d 201- 250.........:.........:.........:.........:.........: chchpchhhhccphcphcphcppchch phhhhhc ph AAAAXXXAAAAAAAAAAAAAAAAAAAA AAAAAAA AX --------ELRFGEPAPARRSVEQLRGIEGSRVRA---TYALLAK---QY my_fasta_file +| + + + + ++ +++ + ++++ + + GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKS 1ZY8_H XXBBBBBXXXXXXXXXXXXAAAAAAAAAAAAAXXXBBBXXXXXXXBBBXX phchphhchhphhpphphchchpcphpchhpcpphchchppchpphpccp 201- 250dddddddd.:.........:.........:.....ddd.:.....ddd.: 251- 300.........:.........:.........:.........:.........: php hppcchch c chc cpcphpphhphhpphhhp XXX XXXXXXXX X XXX XXXAAAAAAAAAAAAAAA GVT-----WNGRRYDP-----K----DWE---KGDTINQCISAATSCLYG my_fasta_file + +++ + + + +++++ ++ +| DGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRG 1ZY8_H XXXBBBBBXXXXXXXXBBBBBXBBBBXXXBBBXXXXXXAAAAXXXXXXXX cpchchphchhpppchchhphchhhhhhpcchhpcphphcchphchchcp 251- 300...ddddd.:......ddddd.dddd...ddd.......:.........: 301- 350.........:.........:.........:.........:.........: hpchhhhhhphhhhhph hhppchhphhhchhchhchcphh AAAAAAAAXXXXXXBBB BBXXXXXXAAAAAAAAAXAAAAA VTEAAILAAGYAPAIGF--VHTGKPLSFVYDIADIIKFDTVV-------- my_fasta_file +++ +++ + + |+|+ + ++ | + ++++ +|+ + + RIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHID 1ZY8_H XXXXXXXXXXXXXXBBBXXXXXXXXXXAAAAAAAAAAAAAAAXXXXXXXX chhhppchppchhphhhhpchhhphhhhhchcccphhhhcphhpphhhhc 301- 350.........:.......dd:.........:.........:..dddddddd 351- 400.........:.........:.........:.........:.........: hchhchhccph pchccchch hh AAAAAAAAXXX XXXXAAAAA AA -------------------PKAFEIARRNP-------GEPDREVRL--AC my_fasta_file + +++++ ++ ++ + ++ YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADT 1ZY8_H XXXXXBBBXXXXBBBBBBXXAAAAAAAXXXBBBBBBBXXXXAAAAAXXXX hphhhphhhphhchhhhpcpccphcccphchchpchhhhhppchcpphcp 351- 400ddddddddddddddddddd:.........:ddddddd..:......dd.: 401- 450.........:.........:.........:.........:.........: cc hhcpp cphhchhhhhcchhhhpch phhh AA AAAAA AAAAAAAAAAAAAAAXXXX XXXX RD-------IFRSS--------KTLAKLIPLIEDVLAAGEI-----QPPA my_fasta_file ++ + + ++ ++ |+ |++ DGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCH 1ZY8_H XXBBBBBBBXXXXXBBBBBBBBXXAAAAAAAAAAAAAXXXXAAAAAAXXX cphhchhppcppcchhphhhhphphpchhpchhhhhchphphcchhchhh 401- 450..ddddddd:....dddddddd.......:.........:.ddddd...: 451- 474.........:.........:.... hhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXX PPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + ++ + + ++ ++ + AHPTLSEAFREANLAASFGKSINF 1ZY8_H XXXXXXAAAAAAAAAAAXXXXXXX hhhphpchhcchphhhphpcphph 451- 474.........:.........:.... The seq2struc alignment: my_fasta_file ---> 1SI0_A align_len=329 ene=-114.00 identity=4.863222 hpc_err=44.072947 size_err=0.000000 ins=13 del=24 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhh hccchphhhhphpphchhcphhhhhcc X BBXXXXXXX XXXXXBBBBBXXXBBBBXXXBBBBBBX -M----TWLPLNPIP--------LKDRVSMIFLQYGQIDVIDGAFVLIDK my_fasta_file + ++ +++ + + + ++|+ +++++++ ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELS 1SI0_A XXBBBBBBXXXXXXXAAAAAAAAAAAXXBBBBBBXXXXAAAAAAAAXXXX hpchphhphcphhhhchhhcphcccpphchphhhhccphhcchcpcpchp 1- 50d.dddd...:.....dddddddd......:.........:.........: 51- 100.........:.........:.........:.........:.........: pphcphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhh XXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBB TGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYA my_fasta_file +++++ + ++|+ + +++ ++++|++ +++ +++ ++ ++ PADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTT 1SI0_A XXXBBBBXXAAAAAAAAAXXXXXXXXXAAAAAAXXXXXXXXXXXXBBBBB hhchhhphchpchhchhphchhpchcpchhccphhhphccppcphhphpp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: ppphpphcpcchhhphchhhccchchchhcchhchchpchhhhccphcph XXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAA SGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQL my_fasta_file + +++ | +++ ++ +++||++++ + + |+| ++ ++ + ++ RARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAM 1SI0_A BBBBBBBBXXXXXXXXXXXXXXXXXXXXXXXXBBXXXXXXAAAAAAAAAA chchhhppccchpchhhphchhchhchchcpchhhcppcpphphphhhhh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: cphcppchchphhhhhcphphphppcc hchcchccpcphp AAAAAAAAAAAAAAAAAAXXXXXXXXX XXXXXXXXXXAAA RGIEGSRVRATYALLAKQYGVTWNGRR----------YDPKDWEKGDTIN my_fasta_file + +|+ + ++ ++ |+++ ++ ++ +++ + + IEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYY 1SI0_A AAAAXAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAXXXXBBBBBXAAA hchhphccpchhhcphchphhcchpppcccphchhccphhchphppphhh 151- 200.........:.........:.......dddddddddd..:.........: 201- 250.........:.........:.........:........iiiiiii....: phhphhpphhhphpc hhhhhhphhhhhphhhppchhphhhchhchhchc AAAAAAAAAAAAAAA AAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAA QCISAATSCLYGVTE-AAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFD my_fasta_file + +++ ++++ + + +|+ ++ + + ++ +++ GKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAK-------HSPNK 1SI0_A AAAAAXXXXAAAAAXBBBBXXXXXXXXBBBBBBBBBXX XXXXA pchhccccpcphhchhhhphhppchpphcphpphhhhc hphpc 201- 250.........:.....d...:.........:.........:.........: 251- 300.........:.iiiiii..:.........:.........:.........: phhhchhchhccphpchccchchhhcchhcppcphhchhhhhcchhhhpc AAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX TVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGE my_fasta_file ++ | | + + ++ +++++ +|+ ++++ + + ANAVKLIEYLS------GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTF 1SI0_A AAAAAAAAAAA XAAAAAAAAAAAXXBBXXXXXXXXAAAAAXXXX hphhchhchhp pcchpphhhchphchhhccphchphhhcphpph 251- 300.........:.........:.........:.........:.........: 301- 329.........:.........:......... hphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXX IQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + ++ + || +++ + ++ + KSDTIKLEDIAKNYEAALKLVDEVKFDDF 1SI0_A XXXXXXAAAAAXXAAAAAAAAAAXXXXXX cpcphchcchhcphchhhchhcchchcch 301- 329.........:.........:......... The seq2struc alignment: my_fasta_file ---> 1TDW_A align_len=334 ene=-120.00 identity=3.592815 hpc_err=46.107784 size_err=0.000000 ins=26 del=29 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiii.....: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + | +|++ ++ + + + + ++ ++ + T--VPWFPRTIQELD-----RFA----NQI------LSYG----AELDAD 1TDW_A X XXXXXXXXXXXX XXX XXX XXXX XXXXXX p hhhhhcphpchc chh pph hphp hchchc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + +++++++++++ + + ++ ++ ++++++ ++ ++|+++ |+ HPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLK 1TDW_A XXXXXXAAAAAAAAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAA hhphcchhhchcccphhchhhphchpphhhchchhcccccphpphhcphc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhch chpchhhhccphcphcp h c AAAAAAXXAAAAAAAAAAAAAA AAXXXAAAAAAAAAAAA A A YQAKLALDEDLRLKVVRKMFEL----RFGEPAPARRSVEQLRG-I----E my_fasta_file ++ |+ ++ + +++++ ++++ +++ +|++ + SLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPV 1TDW_A AAAAAAXXAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAXXBBBBX phhcphhhhchphhhhhhcchhphhccphhphcchpphhpphpphchchh 101- 150.........:.........:..dddd...:.........:...d.dddd: 151- 200.........:.........:.........:.........:.........: ppchchphhhhhcphp hphppcchchcchccpcphpphhphhpphhhph AAAAAAAAAAAAAAXX XXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAA GSRVRATYALLAKQYG-VTWNGRRYDPKDWEKGDTINQCISAATSCLYGV my_fasta_file + + + + |++++ + +++++ ++ + +| + ++ AGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFS 1TDW_A XXXXXAAAAAAAAAXXBBBBXXXXXXXXXXXXXXXXXAAAAAAAXAAAAX hphhppcchhpphhhchhhhpphhchppchhhphchchhhchhphhhhhp 151- 200.........:......d..:.........:.........:.........: 201- 250.........:...iiiii.:.........:.........:.........: pchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccph AAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXX TEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNP my_fasta_file + + + + + + ++++++|++++ ++ +++|+++ +++ DRSFAQFSQEIGL-----ASLGTPDEYIEKLATIYWFTVEFGLCKQGDSI 1TDW_A XAAAAAAAAAAAA AAXXXXAAAAAAAAAAAAXXXXXXBBBBXXBB ccphhphppchph hphpphcchhcchhphhhhphchphhcppcph 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: pchccchchhhcchhcppcphh chhhhhcchhhhpchphh h XXXXAAAAAAAAAAAAAAAAAA AAAAAAAAAAAXXXXXXX X GEPDREVRLACRDIFRSSKTLA----KLIPLIEDVLAAGEIQPP-----A my_fasta_file + + +++ ++++ + ++ +++++++ ++ +++| + KAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAE 1TDW_A BBXXAAAAXXAAAAAAXXXXXXBBBBXXAAAAXXXXXXXXXXXXBBBBBX chhphphhpphpchphhhpcchchhhhchccphhpphphpchphhhhhhc 251- 300.........:.........:..dddd...:.........:....ddddd: 301- 334.........:.........:.........:.... h hcchphhhhhhhhphpchphcpp X XXXXXXXXXXXXXXXXXXXXXXX P----------PEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + ++++|+ + + + + ++ SFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 1TDW_A XAAAAAAAAAAAAAXXXXXXXBBBBXXXXBBBBX phpchccchcphhhphhchhphchchhppchchh 301- 334.dddddddddd........:.........:.... The seq2struc alignment: my_fasta_file ---> 1Z68_A align_len=719 ene=184.00 identity=3.059805 hpc_err=19.332406 size_err=0.000000 ins=0 del=414 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hh hphhh hccch XBB XX XXXXX XXXXX --------------------MTW--LP-----LNPIP-----LKDRV--- my_fasta_file | ++ +++++ + MRALTLKDILNGTFSYKTFFPNWISGQEYLHQSADNNIVLYNIETGQSYT 1Z68_A XXXXXAAAAAAXXXXXXXXXXBBXXXXBBBBBXXXXXBBBBBXXXXXBBB hchhphcchhppphphcphhhphhpppchhhpphcpphhhhphcpppphp 1- 50dddddddddddddddddddd...dd..ddddd.....ddddd.....ddd 51- 100.........:.........:.........:.........:.........: p hhhh php phch hcp hhhhhccpph B BBBB XXX BBBB XXX BBBBBBXXXX -S-----------MIFL--QYG------QIDV--IDG---AFVLIDKTGI my_fasta_file + + +| + + ++ + |+ + ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 1Z68_A BBXAAAAAXXXXXBBBBXXXXXBBBBBBBBBBXXXXXBBBBBBBBBXXXX hhppcphcphphpphphphccphhhhcpchpchhchphphphhhhchppp 51- 100d.ddddddddddd....dd:..dddddd.:..dd...ddd.........: 101- 150.........:.........:.........:.........:.........: cp hhh hp ph hhhh hc BB BBB XX XX BBBB BB RT------------HIP----VG-----SV-ACIM-------LE------ my_fasta_file + + + + EFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGR 1Z68_A BBXXXXXXXXXXXXBBBXXXXXXBBBBBXXBBBBBXXXXXXXBBXXXXXX chhcppchhchhphhhhphhppchhhhhppphhhcpchpchhhphphppc 101- 150..dddddddddddd...dddd..ddddd.:d....ddddddd..dddddd 151- 200.........:.........:.........:.........:.........: hp pchphhhhch h hphpp hhhhh XX XXXXAAAAAA A AAXXX BBBBB -PG---TRVSHAAVRL--------------A--------AQVGT-LLVWV my_fasta_file + + + + + + +++ + ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 1Z68_A XXXBBBXXXXAAAAAAXXXXXXXBBBXXXXXBBBBBBBBXXXXXBBBBBB cpchhpphhchhhccchhhpchhhhhphppchhhhhchpcpchhhhhhph 151- 200d..ddd...:......dddddddddddddd.dddddddd:....d....: 201- 250.........:.........:.........:.........:.........: pchph chhh ppph pphcpcc hhhp XXXXX BBBB XXXX XXXAAAA AAAA --GEAGV--RVYA-----SGQP--------GGARSDK--------LLYQ- my_fasta_file |++ ++ + | ++++ + YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 1Z68_A XXXXXXXBBBBBBXXXXXXXXXBBBBBBBBXXXAAAAXXBBXXXXAAAAX hpccphhcphphhhhchphcphhhchhhhcpphhhhhphpchhhhhhhhp 201- 250dd.....dd:...ddddd.:..dddddddd.......dddddddd....d 251- 300.........:.........:.........:.........:.........: -------------------------------------------------- my_fasta_file SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH 1Z68_A XXBBBBBBBBXXXXBBBBBBBBXXXXBBBBBBBBBXXXXXXBBXXXXXBB pchhhphhphhpccchhhphhcchpphphhphhchccchpphchhcppch 251- 300dddddddddddddddddddddddddddddddddddddddddddddddddd 301- 350.........:.........:.........:.........:.........: hchhhc cchch chhcchh AAAAXX AAAAA AAAAAAA -------------------AKLALD------EDLRL------KVVRKMF- my_fasta_file +++| + |+++ + IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI 1Z68_A BBBXXXXXXXXXXXXXXBBXXXXXXBBBBBBXXXXXBBBBBBXXXXXXXB hccpcpphhpphhhpphhhphchhphhchhpcccphchhhhhccphcphh 301- 350ddddddddddddddddddd:.....dddddd.....dddddd.......d 351- 400.........:.........:.........:.........:.........: chchpch hhh ccphcphcph cppchch AAAAXXX AAA AAAAAAAAAA AAAAAAA -ELRFGEP-------APA------RRSVEQLRGI------EGSRVRA--- my_fasta_file ++ + ++ +++ ++|+ + +||+ ++ QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKC 1Z68_A BXXXXXXXBBBBBBBXXXBBBBBBXXXXXXXXXXBBBBBBXXXXXXXBBB phpppchchhphhchppcphhhpppchcchhpccphhchphpphhhpcch 351- 400d.......ddddddd...dddddd.....:....dddddd.......ddd 401- 450.........:.........:.........:.........:.........: phhhhhcphphp hppcch chcchc cpcphp AAAAAAAAXXXX XXXXXX XXXXXX XXXAAA TYALLAKQYGVT-----WNGRRY-----DPKDWE-----KGDTIN----- my_fasta_file ++ |+| ++++ + ++ | +++ + | |+ VTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 1Z68_A XXXXXXXXXXXXBBBBBXXXXXXBBBBBXXXXXXBBBBBXXXXXXBBBBB hphhhcccchphhphphpchhchhhhhhhphphhhpphhcpcpcpchchh 401- 450.........:..ddddd..:...ddddd.:....ddddd:.....ddddd 451- 500.........:.........:.........:.........:.........: phhphhpphhhphpc hh hhhhphhhh hph AAAAAAAAAAAAAAA AA AAAXXXXXX BBB -QCISAATSCLYGVTE---------AA---------ILAAGYAPA--IGF my_fasta_file ++ + + ++++++ ++ + ++++ + EENKELENALKNIQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLI 1Z68_A BXXAAAAAAXXXXXXXBBBBBBBBBXXBBBBBBBBBXXXXXXXXXBBBBB ccpcchcphhcphphhccchcchchcchphhhchhhhhphccpcchhhhh 451- 500d........:......ddddddddd..ddddddddd...:.....dd..: 501- 550.........:.........:.........:.........:.........: hh ppchhp hhhch hchh BB XXXXXX AAAAA AAAA VH----------TGKPLS--FVYDI------------------ADII--- my_fasta_file + ++ + ++ + QVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAV 1Z68_A BBXXXXXXXXXXXXXXXXAAAAAAAXXXXBBBBBBXXXXXXXXAAAAXXX phhpphhppphcphhhhphhphhhpccphhhhhhcpcpphhppcchhhhh 501- 550..dddddddddd......dd.....dddddddddddddddddd....ddd 551- 600.........:.........:.........:.........:.........: c hcphhhchhchhccphp chccchchhhcch X AAAAAAAAAAAAAXXXX XXXAAAAAAAAAA ----K--FDTVVPKAFEIARRNPG---------EPDREVRLACRDI---- my_fasta_file ++ ++ | + + +++ + ++ ++++ YRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGT 1Z68_A XXXXXAAAAAAAAAAAAAAAXXXXBBBBBBBBBBBXAAAAAAAAAAXXXX hcchphhchccphphhcchhchphhcccchhhhphphpphhpphhhhppp 551- 600dddd.dd..:.........:....ddddddddd......:......dddd 601- 650.........:.........:.........:.........:.........: hcppcphh chhhhhcchhhhpchp AAAAAAAA AAAAAAAAAAAXXXXX -------------------FRSSKTLA-------KLIPLIEDVLAAGEIQ my_fasta_file +++ |+ + + | +++ GLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEY 1Z68_A XXXXBBBBBXXXXXXXXXXAAAAAAAAXXXXXXXXAAAAAAXXXXXXXXX phhchphhhhhhpphchhhphhpcchhphhpcccphchhcppphhhchch 601- 650ddddddddddddddddddd:.......ddddddd.....:.........: 651- 700.........:.........:.........:.........:.........: hhhh hcchphhh hhhhh phpchphcp XXXX XXXXXXXX XXXXX XXXXXXXXX PPAP-------PEDAQPVA------------IPLPV-----SLGDAGHRS my_fasta_file ++ ++|+ + + |+ | FRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSG 1Z68_A XXXXBBBBBBBXXXXXXXXAAAAAAAAAAAAXXXXXBBBBBXXXXXXXXX hcphchhhhhpphccphhhppphphhchhhphphchphhhhpcpphphpp 651- 700....ddddddd........dddddddddddd.....ddddd........: 701- 719.........:......... p X ------------------S my_fasta_file | LSTNHLYTHMTHFLKQCFS 1Z68_A AAAAAAAAAAAAAAAAAAX hppphhhphhphhhcphhp 701- 719dddddddddddddddddd. The seq2struc alignment: my_fasta_file ---> 1K4W_A align_len=307 ene=-99.00 identity=5.863192 hpc_err=42.996743 size_err=0.000000 ins=63 del=2 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + +++++ + ++ + ++ T--MSEIDRIAQNII-----KSH----LET------CQYT-----MEEL- 1K4W_A X AAAAAAAAAAAA AAA AAX XXXX AAAA p hpchcchhpphh cph hcp hphp hcch 1- 50.........:.........:.........:.........:.........: 51- 100iii......:.........:iiiiiiiiiiiiiiiiiiiii........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++ +++ ++++| | +| ++ + ---HQLAWQTHTYEEIKAYQ---------------------SKSREALWQ 1K4W_A AXXXXXXXXAAAAAAAA XXXAAAAAA hphhhpphphcchchhp pcpcchhhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++|++ ++++++ ++ +|+ ++ + +++ ++ + + + |+++|| ++| QCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRA 1K4W_A AAAAAAAAAAAAAAAAAAXXAAAAXXXAAAAAAAAAAAAAAAAAAAAXXX phhhphphhhphhhchhcchpphhchhppcphhhhcpphhchhhhchhch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhp hpchhhhhh AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAA AAAAAAAAX -LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYG-VTEAAILAA my_fasta_file + ++ ++ + ++++++++| ++++++ +++++ + +++++ | FNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIA 1K4W_A BBXXXXBBBBXXBBBXXXXXXXXXXAAAAAAAAAAAAAAAXXXXXAAAAA hphhppphhhcpchpphphhchhppcchhpchhchhcphhphphpccchh 151- 200d........:.........:.........:.........:d........: 201- 250.........:.........:.....i...:.........i.........: phhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchc XXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAA GYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVR my_fasta_file + ++| + + + |++ + + + + + ++ +|+ | + + + LFSSAVLISPDRAWLLEPRKVQKLQ-EKIYFALQHVIQK-NHLDDETLAK 1K4W_A AAAAAAAXXXXXXXXXXAAAAAAAA AAAAAAAAAAAAA XXXXXXAAAA hhpphhhhphcchhhhchcchpchp cchhhhhphhhpc phhcccphhc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.....iiiiiiiiiiiiii:.........: hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphp AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXX LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLG my_fasta_file | + ++ ++++ ++++|++++++ +| ++ + + LIAKIPTITAVCNLHGEKLQVFKQS--------------HPDIVNTLFPP 1K4W_A AAXXAAAAAAAAAAAAAAAAAAAAA XAAAAAAXXXA hhhchhphphhhphhpcchphhcpp hhchhpphhhh 251- 300.........:.........:.........:.........:.........: 301- 307....... chphcpp XXXXXXX DAGHRSS my_fasta_file + +++ LYKELFN 1K4W_A AAAAAAX hhcchhp 301- 307....... The seq2struc alignment: my_fasta_file ---> 1KP0_B align_len=403 ene=-112.00 identity=6.203474 hpc_err=38.213399 size_err=0.000000 ins=1 del=98 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hph hhhphhhh ccchphhhhp XBB XXXXXXXX XXXXBBBBBX ----MTW-----LPLNPIPL-----------------KDRVSMIFLQ--- my_fasta_file +|+ +++++ + |+++ |+ AAMIETEKYHNGEKKYTPFSEAEMTRREDRLRAWMAKSDIDAVLFTSYHN 1KP0_B XXXXXBBXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAXXXXBBBBXXAAA hhhhcpcchhppccchphhpchchpccccchchhhhcpchchhhhpphhp 1- 50dddd...ddddd.......:ddddddddddddddddd..:.......ddd 51- 100.........:.........:.........:.........:.........: hpphchhcphhhhhccpph cphhh hp phhhhhhchp XXBBBBXXXBBBBBBXXXX BBBBB XX XXBBBBBBXX -----YGQIDVIDGAFVLIDKTGI-RTHIP---VG-----SVACIMLEPG my_fasta_file +++ + + + + ++ +| ++ +| | +++ ++ INYYSGWLYCYFGRKYAEVIDEVKAVTISKGIDGGMPWRRSFGDNIVYTD 1KP0_B AAAAAXXXXXXXXXXXBBBBXXXXBBBBBBXXXXXAAAAAXXXBBBBBXX hphhpphhhhhhpcchhchhcchchhphpcphcpphhhccphpcphhhpc 51- 100ddddd....:.........:....d....:ddd..ddddd.........: 101- 150.........:.........:.........:.........:.........: pchphhhhchhhp hpphhhhhpchphc hhhppphpphcpcch XXXXAAAAAAAAA XXXBBBBBXXXXXB BBBXXXXXXXAAAAA TRVSHAAVRLAAQ-VGTLLVWVGEAGVR-------VYASGQPGGARSDKL my_fasta_file + + + ++ +++ +|+++ + +++| ++|++ + + + WKRDNFYSAVKKLVKGAKEIGIEHDHVTLDHRRELEKALPGTEFVDVGEP 1KP0_B XXXXAAAAAAAAAXXXXXBBBBXXXXXXAAAAAAAAAAXXXXBBBBXAAA hcccphhphhcchhcphcchphchchhphchccchcchhhppchhchpch 101- 150.........:...d.....:........ddddddd....:.........: 151- 200.........:.........:.........:.........:.........: hhphchhhccchchchhcchhchchpchhhhccphcphcphcppchchph AAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAA LYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATY my_fasta_file ++ + + ++ + +++ | |+|+++++ + |+++ + VMWERVIKSSEEEDLIREGARISDIGGAATAAAISAGVPEYEVAIATTDA 1KP0_B AAAAAXXXXAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXAAAAAAAAAAA hhhcchhcppcccchhccphchpchpphhphhhhphphhchchhhhppch 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhcphphphppcchc hcchccpcphpphhphhpphhhphpchh AAAAAAXXXXXXXXXXX XXXXXXXXAAAAAAAAAAAAAAAAAAAA ALLAKQYGVTWNGRRYD-----PKDWEKGDTINQCISAATSCLYGVTEAA my_fasta_file +++++ + + +++ + ++ |+++++++ ++ +++ MVREIARDFPYVELMDTWIWFQSGINTDGAHNPVTDRVVERGDILSLNCF 1KP0_B AAAAAAXXXXXXXXXXXBBBBBBXXXXXXXXXXXXXXXXXXXXBBBBBBB hhcchhcchhhhchhcphhhhppphppcphhphhpcchhccpchhphphh 201- 250.........:.......ddddd.......:.........:.........: 251- 300.........:.........:.........i.........:.........: hhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchc AAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXX ILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPD my_fasta_file || +| ++ ++ + + +++ +++ + +| + + | + ++| PMIFGYYTALERTLFLEEVDDASLEIWEK-NTAVHRRGLELIKPGARCKD 1KP0_B XBBXXBBXXBBBBBBBXXXXAAAAAAAAA AAAAAAAAAAAXXXXXXAAA hhhhphhphhccphhhcchcchphchhcc pphhhccphchhchphchcc 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: cchchhhcchh c pp cphhchhhhhcchhhh AAAAAAAAAAA A AA AAAAAAAAAAAAAAAX REVRLACRDIF----------------R--SS--KTLAKLIPLIEDVLAA my_fasta_file +++ |++++++ + ++ +++ ++++ + + IASELNDMYREWDLLRYRTFGYGHSFGVLDHYYGREAGVELREDIETVLE 1KP0_B AAAAAAAAAAAXXXXXXXXXXXXXXXXXBBXXBBXXXXXXXXXXXXXXXX hhpchpchhcchchhchcphphphphphhchhhpcchphchccchcphhc 301- 350.........:.dddddddddddddddd.dd..dd.....:.........: 351- 400.........:.........:.........:.........:.........: pch ph hhhhcch ph hhhh hhhphpchphc XXX XX XXXXXXX XX XXXX XXXXXXXXXXX GEI----QP----PAPPEDA----QP-----VAIP---LPVSLGDAGHR- my_fasta_file + | |++++ | ++++ +++ + | PGMVVSMEPMVMDPEGEPGAGGYREHDILVIKENDTENITGFPFGPEHNI 1KP0_B XXXBBBBXXBBBBXXXXXXXBBBBXXBBBBBXXXXBBBXXXXXXXXXXXB hphhhphchhhhchcpchphpphcchchhhhccpcpcphpphhhphchph 351- 400...dddd..dddd......:dddd..ddddd....ddd.:.........d 401- 403... pp XX -SS my_fasta_file + IKA 1KP0_B BXX hch 401- 403d.. The seq2struc alignment: my_fasta_file ---> 2PIA_A align_len=333 ene=-109.00 identity=6.306306 hpc_err=47.147146 size_err=0.000000 ins=12 del=28 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphhhhph pphch hcphhhhhcc XBBXXXXXXXXXXXXBBBBBXX XBBBB XXXBBBBBBX MTWLPLNPIPLKDRVSMIFLQY--GQIDV-----------IDGAFVLIDK my_fasta_file +| +++ +||+++ ++ + ++++ ++ + ++ TTPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP 2PIA_A XXXXXXXXBBBBBBBBBBBBXXBBBBBBBXXXXXXXXXXXXXXBBBBBXX pphpccphhchchhpccchhcchhphchpchpphhhhhhchphphphhhh 1- 50.........:.........:..dd.....ddddddddddd.........: 51- 100.........:.........:.........:........i:.iiiii...: pphcphhh hpphhhhhhchppchphhhhchhhphpphhhhhpchp XXXBBBBB XXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXX TGIRTHIP-----VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG my_fasta_file |+| + + + ++ ++ + ++++++ | |+ NGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFID-DT-----SEGD 2PIA_A XXXBBBBBXXXXXXXXXBBBBBBBXXXXXXXAAAAAAA XX XXXX pppccphphhpcppccpchhhhhcccpppcppphphhc cp pcpc 51- 100........ddddd......:.........:.........:.........: 101- 150.........:.........:.........:.........:.....iiii: hchhhppphpphcpcchhhphchhhccchchchhcchhchchpchhhhcc XBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAA VRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARR my_fasta_file ++ +++ + + + +++ + |+ + + +++++++++|++ AVEVSLPRNEFPLDKRAKSFILVAGGIGITPMLSMARQLRAEGLR----S 2PIA_A BBBBXXXXXXXXXXXXXXBBBBBBBXXXAAAAAAAAAAAAAAXXX B hhchphhcpchhhccchcphhhhhpphphphhhphhcphchcphc p 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: phcphcphcppchchphhhhhcphphphppcchchcchccpcphpphhph AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA SVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA my_fasta_file ++++ + + + ++ +++|++ + ++++++ ++ ++|+ + + + FRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPTKAFDFWSVFEKS 2PIA_A BBBBBBBXXXXXXXXAAAAAXXXXXXXBBBBBXXXXXXXXXXAAAAAXXX hchhhhpcchcpphhhcchppcchcpchchhhchpchpchhchhphhccp 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:........ii.........: hpp hhhphpchhhhhhphhhhhphhhppchhphhhchhchhchc AAA AAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAA ATS------CLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFD my_fasta_file +++ + ++ + + ++ +| |++ ++ + +| ++ + KPAQHVYCCGPQALMDTVRDMTGHWPSGTVHFESFGAT--NTNARENTPF 2PIA_A XXXBBBBBBXXAAAAAAAAAAXXXXXXXXBBBBXXXXX XXXXXXXXXB chhphhhhhphphhhcphcchpphhhppphhhcphphp ppphccpphh 201- 250...dddddd:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: phhhchhchhccphpchccchchhhcchhcppcphhchhhhh cchh AAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAA AAAA TVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLI----EDVL my_fasta_file ||+ ++ +++ +|+ + ++++|+++ +++| +++ + ++ + ++ TVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGE 2PIA_A BBBBXXXXXBBBBXXXXXAAAAAAAXXXXXXXXXXXXXXXXXBBBBBBXX phchpcpppphchhhpcphhchhcchphchhpphcppphpphcphhhppc 251- 300.........:.........:.........:.........:..dddd...: 301- 333.........:.........:.........:... hhpchphhhhhcchphhhhhhhhphpchphcpp AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file |++ ++ +++| + + ++++ +++ + + ADHRDMVLRDDEKGTQIMVCVSRAKSAELVLDL 2PIA_A BBXXXXXXXXXXXXXBBBXXXXBBXXXBBBBXX hchcchhhcccccppphhhhhpchcphchhhch 301- 333.........:.........:.........:... The seq2struc alignment: my_fasta_file ---> 3E3P_A align_len=358 ene=-131.00 identity=4.469274 hpc_err=38.268158 size_err=0.000000 ins=11 del=53 begin1=0 begin2=0 1- 50.ii......:.....ii..:.........:i.....iiii.........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++++ + + + ++++ +++| +|+ +++++|| A--AADERSRKEMDR--FQVERMAGQGTFG-TVQLG----KEKSTGMSV- 3E3P_A X XXXAAAAAAAXX BBBXXBBBBBXXX XXBBB BBBBBXXXX h hhcccpccchcc hphcchhpppphp phphp cccppphph 1- 50.........:.........:.........:.........:.........: 51- 100i........:.........:.........:.........:.........: hhhhchppchphhhhchhhphpp hhhhh pchph chhhppphpp BBBBBXXXXXXAAAAAAAAAXXX BBBBB XXXXX BBBBXXXXXX CIMLEPGTRVSHAAVRLAAQVGT---LLVWV--GEAGV--RVYASGQPGG my_fasta_file + + +++ |+ ++ + + + ++ ++++ +++ -AIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIY 3E3P_A XXXAAAAAAAAAAAAXXXXXXXBBBBBBBBXXXXXXXBBBBBBBBXXXX hhcchhpchchcpcchphhpchhhhhhhphhphpphhhphpcccccchh 51- 100.........:.........:...ddd...:.dd.....dd.........: 101- 150.........:.........:.........:.........:.........: hcpcchhhph chhhc cchchchhcchhchchpchhhhccphcphcp XAAAAAAAAA AAAXX AAAAAAAAAAAAAAAAXXXAAAAAAAAAAAA ARSDKLLYQA--KLALD--EDLRLKVVRKMFELRFGEPAPARRSVEQLRG my_fasta_file ++++ ++ ++ + + + ++ + + +++ + ++ + LNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV 3E3P_A XAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXX hphhhchhhcphhchhcphhccphhhhhhhhchhhhphhcphphhhhhph 101- 150.........:dd.....dd:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: h cppchchphhhhhcphphphppcchchcchccpcphpp hh A AAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAA AA I----EGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQ-----CI my_fasta_file + + + + ++ + +++| ++ ++|+ ++ ++ NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAP 3E3P_A XBBBBXXXXBBBBXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXX phhhcchchhphhhpchcpphchhchpphcchphpchphhhhhpchhchh 151- 200.dddd....:.........:.........:.........:...ddddd.: 201- 250.........:.........:.........:.........:.........: phhpphhhphpchhhhhhphhhhhph hhppchhphhhchhc AAAAAAAAAAAAAAAAAXXXXXXBBB BBXXXXXXAAAAAAA SAATSCLYGVTEAAILAAGYAPAIGF--------VHTGKPLSFVYDIAD- my_fasta_file + ++ ++|+ +| + | |++ ++ + +|++ ELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGC 3E3P_A XAAAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAXXXXAAAAAAAX chhhppphhpphhchhphphhhhchhhpchhhcpcpphpphhchhchhph 201- 250.........:.........:......dddddddd.....:.........d 251- 300.........:.........:.........:.........:.........: hhchcphhhchhchhccphpchccchchhhcchh cppcphhchhh AAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAA AAAAAAAAAAA ----IIKFDTVVPKAFEIARRNPGEPDREVRLACRDIF-RSSKTLAKLIP my_fasta_file ++ + + +++ + + ++ + ++ +|++| + PSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQ 3E3P_A XXXXXXXXXXXXXXXAAAAXXXXXXXXAAAAAAAAAAAXXXXXXXXXXAA hpcchhcchphphpchchhppcphhhpphhpchphcchcchhchhphhhp 251- 300dddd.....:.........:.........:........d:.........: 301- 350.........:.........:.........:.........:.........: hhcchhhhpchphhhhhcchphhhhhhhhphp ch phc AAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXX XX XXX LIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLG------DA-------GHR my_fasta_file + ++ +++++ | +|++ + ++ + ++ + YLPEERMKPYEALCHPYFDELHDPATKLPNNKDLPEDLFRFLPNEIEVMS 3E3P_A AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAXXAAAAAAAXXX hhhccchchhchhhhhhhcchhchhpchhppcchhcchhchhhpchchhp 301- 350.........:.........:.........:..dddddd.:ddddddd..: 351- 358........ pp XX ------SS my_fasta_file ++ EAQKAKLV 3E3P_A AAAAAAXX chpchchh 351- 358dddddd.. The seq2struc alignment: my_fasta_file ---> 1DWO_B align_len=305 ene=-72.00 identity=6.885246 hpc_err=42.622951 size_err=0.000000 ins=47 del=0 begin1=0 begin2=0 1- 50.........:.........:.........:.........:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file |++ + | ++++++ | + ++++| +|+ + ++ +|++ MVTAHFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAA-----SGID- 1DWO_B XXXXBBBBBXXXXXXXXXXXXAAAAAAAXXXBBBBBXXXX XXXX hhphhhhhhhphhhphhhhhchchhhcchphchphhchhh pphc 1- 50.........:.........:.........:.........:.........: 51- 100ii.......:.........:...ii....:.......ii:....i....: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + ++| ++ + ++++ ++ + + ++ + +| + --PRQIEQINSFDEYSEPLLTFL--EKLPQGEKVIIV--GESCA-GLNIA 1DWO_B XXXXXXXXXAAAAXAAAAAAA AAXXXXXXBBBB BBXXX AAAAA hcphcphpphcchpchhhphh cchhppcchhhh pcphh phphh 51- 100.........:.........:.........:.........:.........: 101- 150........iiiiiiiiiii:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file +| + | ++ ++++ ++ ++ +++++ + ++ IAADRYVD-----------KIAAGVFHNSLLPDTVHSPSYTVEKLLESFP 1DWO_B AAAAAAXX XBBBBBBBXXXXXXXXXXXXAAAAAAAAAXX hhhcchhc chhhphhhpphhhcphhphphphcchhcphh 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + ++ | + + ++ ++|+ + ++++ | |++|++| |+ DWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKCTDGEYELAKMV--- 1DWO_B XXXXXBBBBBBXXXXXBBBBBBXXAAAAAAXXXXXXXAAAAAAAAAA chccpchhphpphppcphpphchphhhhccphhpchpcpchchhchh 151- 200.........:.........:.........:.........:.........: 201- 250ii.iiiii.:....iiii.:....iiiiiiiii......:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file +|+ +++ ++ +|++ + ++ --M-----RKGSLF----QNVLAQ---------RPKFTEKGYGSIKKVYI 1DWO_B X XXXXXX AAAAAX XXXXXXXXXXXXXBBBB h ccpphh pphhhp chchpccphpphcchhh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file |++ +++++ + + ++ ++++++++++ ++++++++ +| WTDQDKIFLPDFQRWQIANYKPDKVYQVQGGDHKLQLTKTEEVAHILQEV 1DWO_B BXXXXXXXXAAAAAAAAAAXXXXBBBBXXXXXXXAAAAXAAAAAAAAAAA hpcpcchhhhchpchphhphchcchhphpppchchphpcpcchhhhhpch 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +++++ ADAYA 1DWO_B AAAAX hchhh 301- 305..... The seq2struc alignment: my_fasta_file ---> 2AYI_C align_len=406 ene=-85.00 identity=4.926108 hpc_err=38.423645 size_err=0.000000 ins=0 del=101 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hp hhhhphhhhccchphhhhphpp hchhc XB BXXXXXXXXXXXXBBBBBXXXB BBBXX MT----------WLPLNPIPLKDRVSMIFLQYGQ-----------IDVID my_fasta_file + + + +| ++ + + + +++ AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGA 2AYI_C XXAAAAAAAAAAAAAXXXXXXXXXBBBBBBXXXXAAAAAAAAAAAAAXXX hhccphcchhchhhchphphccppchhhphhhchhchhchhhcchhccph 1- 50..dddddddddd.......:.........:....ddddddddddd....: 51- 100.........:.........:.........:.........:.........: phhhhhccpphcphhhhpphhhhhhchppchphhhhchhhphpphhhhhp XBBBBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBX GAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVG my_fasta_file |+ |+ ++++++ ++ +++| ++++ + ++ ++| +|+ + | SLFTVIYGDQELARKRLALAPEEGLDKAPAWLYEGMARAFREGAARLAVS 2AYI_C XBBBBBBXXAAAAAAAAAAXXXXXXXXXXAAAAAAAAAAAAXXXBBBBBB phhphhhpcpchhccchhhhhccphcchhhhhhcphhchhccphhchhhp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: chphchhhppphpphcpcchhhphchhhccchch XXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAA EAGVRVYASGQPGGARSDKLLYQAKLALDEDLRL---------------- my_fasta_file + + ++| + + ++++ + ++ ++ GSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGW 2AYI_C XXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXBBXXXXXX ppchchhcphhhcchpchpchphchhchhhchhpchhpphphhhhhhhph 101- 150.........:.........:.........:....dddddddddddddddd 151- 200.........:.........:.........:.........:.........: chhc chhchchpchhhhccphcphcphcppchchphhhhhcphphp AAAA AAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX KVVR----KMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVT my_fasta_file ++ + +++| ++ + + + ++ ++ +++++ |+++ | + + ARAVFPGLPEEEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYL 2AYI_C AAAAXXXXXAAAAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAAAAAXXXX hchhhhphhccchhcchhchhhphpchcpcchhhhhchhpchhhcchhhh 151- 200....dddd.:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hp pcchchc chccpcphpphhphhpphh hphpc XX XXXXXXX XXXXXXAAAAAAAAAAAAA AAAAA ------WN------GRRYDPK--DWEKGDTINQCISAATSCL---YGVTE my_fasta_file + + +++ ++ +++ +++++ + +++ NARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLCNPNLPTEEVF 2AYI_C BBBBBBXXBBBBBBXXXXXXXBBXXXXXXXXXXXXXXXXXXXBBBXXXXX phcchhhhhhcphppchhhphhcphhhppphphpcppchhphphhpcchh 201- 250dddddd..dddddd.....:.dd......:.........:..ddd....: 251- 300.........:.........:.........:.........:.........: h hhhh hp hhhhhphhhpp chhphhhchhc h A AAAA XX XXXXBBBBBXX XXXXAAAAAAA A A------AILA---AG--YAPAIGFVHTG------KPLSFVYDIAD---I my_fasta_file + ++ + ++++ ++++ + + ++ + TAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLR 2AYI_C XBBBBBBXXXXBBBXXBBBXXXBBBBBXXBBBBBBXXXXAAAAAAAXXXX phhhccchcphhchpchhhhppphhcphhhchccphhhchchccpcchhc 251- 300.dddddd..:.ddd..dd.:.........dddddd....:......ddd: 301- 350.........:.........:.........:.........:.........: hchcp hhhchhchhccphpchccchchhhcc hhcppcphh AXAAA AAAAAAAAAAXXXXXXXAAAAAAAAA AAAAAAAAA IKFDT-----VVPKAFEIARRNPGEPDREVRLACRD-----IFRSSKTLA my_fasta_file ++ || + + + + ||+++ +|+ ++++ + +++ RLLDTDEGARRLGEVALVPADNPIAKTGLVFFDTLFDENAASHIAFGQAY 2AYI_C XXXXXBBBBBXXXXXXAAAAAXXXXXXAAAAAXXXXBBBBBXXXXXXXXX chhcpccphcchpchhhhhhcphhhcpphhhhcphhccphhphhhhpphh 301- 350.....ddddd.........:.........:......ddddd........: 351- 400.........:.........:.........:.........:.........: chhhhhcchhhhpc hphhhh hcchp hhhhhhhhphpc AAAAAAAAAAAXXX XXXXXX XXXXX XXXXXXXXXXXX KLIPLIEDVLAAGE-----IQPPAP-----PEDAQ---PVAIPLPVSLGD my_fasta_file ++ ++ ++++|+ + +| +++++++|+ QENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR 2AYI_C XXXAAAAXXXXXXXBBBBBXXXXXXBBBBBXXXXXBBBBBBXXBBXXBBX pcphcpchppchhcccpppcphhhhchhhppcchchcphhccppcphhhc 351- 400.........:....ddddd:.....ddddd.....ddd.:.........: 401- 406...... hphcpp XXXXXX AGHRSS my_fasta_file +|++++ RGRWVV 2AYI_C XXXBBB cpchhh 401- 406...... The seq2struc alignment: my_fasta_file ---> 3FNR_A align_len=452 ene=-77.00 identity=3.982301 hpc_err=32.743362 size_err=0.000000 ins=0 del=147 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hp hhhhphhhhccchphhhhphpphchhcphhhh XB BXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBB MT-------------WLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVL--- my_fasta_file + +++++++| +| ++ +++++++ + LSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARG 3FNR_A XXAAAAAAAAAAAAAXXXXXXXXXXXXXBBBBBXXXXXXXXXXXXXXAAA hpcphhpchhpphhpphpchpcpcccpcphhhchhphphpphhhhphhcp 1- 50..ddddddddddddd....:.........:.........:.......ddd 51- 100.........:.........:.........:.........:.........: hccpphcphhhhpphhhhhhchpp chphhhhchhhphpphh BBXXXXBBBBBXXXXBBBBBBXXX XXXAAAAAAAAAXXXBB ---IDKTGIRTHIPVGSVACIMLEPGT------RVSHAAVRLAAQVGTLL my_fasta_file +| + ++++ ++ +++ ++ + ++++ ++ ++++ AVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHEN 3FNR_A AAAAAAAAAAAAAXXXBBBBBBBBXXXAAAAAAAAAAAAAAAAAAXXXXX hhhpcphpchhchhphchppchhhpchppphhhhphphhhphccphhhcp 51- 100ddd......:.........:.......dddddd......:.........: 101- 150.........:.........:.........:.........:.........: hhhpchphch hhppphpph cpcchhhphchhhcc BBBXXXXXBB BBXXXXXXX AAAAAAAAAAAAXXA VWVGEAGVRV--------------YASGQPGGA--RSDKLLYQAKLALDE my_fasta_file |+ +|++ + ++ +++ + ++ + ++| |+ VEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIK 3FNR_A XXXXXXXXXXAAAAAAAAAAAAAAXXXXXXXXXAAAAAAAAAAAAAAAAA hchhcphhcpchhhchhcchhcchpcchhpccphhphhchhccchhhhhc 101- 150.........:dddddddddddddd.....:...dd....:.........: 151- 200.........:.........:.........:.........:.........: chchc hhcchhchch AAAAA AAAAAAAAAA DLRLK-----------------VVRKMFELRF------------------ my_fasta_file +++ ++ + | + QNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK 3FNR_A AAAAAXXXXXXXBBBXXXXXXXAAAAAAAAAAXXXBBBBXXBBBBXXXXX pphcphchchcphhpccphhchhphphcphcchcphhcpcpchhhhpppc 151- 200.....ddddddddddddddddd.......:..dddddddddddddddddd 201- 250.........:.........:.........:.........:.........: pchhhhccphcphcph cppchchph XXXAAAAAAAAAAAAA AAAAAAAAA -------------GEPAPARRSVEQLRGI------------EGSRVRATY my_fasta_file + |+ +|+++ + ++++ ++ GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPR 3FNR_A XXXXXBBBBXXXXXXXAAAAAAAAAAAAAXXXXXBBBBBBBXXXXXXAAA pccccchhhcccpcpphhhhchhhhccchpcphpchhphhphchhphhhc 201- 250ddddddddddddd......:.........dddddddddddd........: 251- 300.........:.........:.........:.........:.........: hhhhcphphphppc ch chcchccpcphpphhphhpphhh AAAAAAXXXXXXXX XX XXXXXXXXXAAAAAAAAAAAAAA ALLAKQYGVTWNGR------RY-----DPKDWEKGDTINQCISAATSCLY my_fasta_file + |+ ++++ |+ + + |+ + + ++ MKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE 3FNR_A AAAAAAXXXXXXXXBBBBBBXXBBBBBXXBBXXXXXXXXXAAAAAAAAXA hchhhchhphcppphchhhhphhphhccpchhchpcchpphhhhpchhcc 251- 300.........:....dddddd..ddddd..:.........:.........: 301- 350.........:.........:.........:.........:.........: phpchhhhhhphhhhhphh hppchhphhhchhchhchcphhhch AAAAAAAAAXXXXXXBBBB BXXXXXXAAAAAAAAAXAAAAAAAA GVTEAAILAAGYAPAIGFV----HTGKPLSFVYDIADIIKFDTVVPKA-- my_fasta_file ++ | + ++++ + + + ++ ++++ +|++ +++ IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFA 3FNR_A AAAAAAXXXXXXXXXBBBBXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXX hppchhchhhhpcchcphhchchpchpcccppphhhhhphhhhchhphhh 301- 350.........:.........dddd......:.........:........dd 351- 400.........:.........:.........:.........:.........: hchhccphpch c cchchhhcch hcppcphh AAAAAXXXXXX X AAAAAAAAAA AAAAAAAA ----FEIARRNPGEP-----------D-REVRLACRDI----FRSSKTLA my_fasta_file ++++++ ++ + | + +++ KAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDY 3FNR_A XXXXXXXXXXXXXXXAAAAAAAAAAAXAAAAAAAAAAAXXXXAAAAAAAA chpcchcchhchchpphppcphphhhchhphchhhpchhchchhpchhch 351- 400dddd.....:.....ddddddddddd.d.:........dddd.......: 401- 450.........:.........:.........:.........:.........: chhhhhcchhhhpchphhh hhcchphhhhhhhhphpchphc AAAAAAAAAAAXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX KLIPLIEDVLAAGEIQPPA---------PPEDAQPVAIPLPVSLGDAGHR my_fasta_file +++ + + |+ + + + + ++ ++ |++++ LKNLAANFHKFYNENKVVGSANENDLLKLFSLVALSIKTAFSLMGIEAKN 3FNR_A AAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXA hcphhhphhchhpcpchhpphpcpchhchhphhhhphcphhphhphchcp 401- 450.........:.........ddddddddd.:.........:.........: 451- 452.. pp XX SS my_fasta_file + KM 3FNR_A AA ch 451- 452.. The seq2struc alignment: my_fasta_file ---> 1VLI_A align_len=371 ene=-120.00 identity=6.469002 hpc_err=39.353099 size_err=0.000000 ins=4 del=66 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhh hphhhhccchphhhhphpphc hhcphhhh X BBXX XXXXXXXXXXBBBBBXXXBBB BXXXBBBB M--TWLP-LNPIPLKDRVSMIFLQYGQID-------------VIDGAFVL my_fasta_file + +++++ +++ + + ++++ + ++ | + AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKF 1VLI_A XBBBBXXBBBBXXXXXBBBBBBBXXXXXXAAAAAAAAAAAAAAXXXBBBB hhhphhpcphpcchhhhhhhchphphcpchcphhhhhchhhchphchhch 1- 50.dd....d.:.........:.........ddddddddddddd.......: 51- 100.........:.........:.........:.........:.........: hccpphcphhhhpphh hhhhchppchphhhhchhhphpphhh h BBXXXXBBBBBXXXXB BBBBBXXXXXXAAAAAAAAAXXXBBB B IDKTGIRTHIPVGSVA----CIMLEPGTRVSHAAVRLAAQVGTLLV---W my_fasta_file +++ ++|+ ++++ +++ + +| + + + + + ++|+ + QMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK 1VLI_A XXXXXXXXXXXXXXXXAAAAXXXXXXXXXXAAAAAAAAAAXXXBBBXXXX phhphcchhpcchphhcphhpcchphhphhpphchhhchhhhhhchhccc 51- 100.........:......dddd.........:.........:......ddd: 101- 150.........:.........:.........:.........:.........: h pchphchhhppphpphcpcchhhp h chhhccch B XXXXXBBBBXXXXXXXAAAAAAAA A AAAXXAAA V--------GEAGVRVYASGQPGGARSDKLLYQ----A----KLALDEDL my_fasta_file + |+ +| | + ++ + |+++++ QVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIF 1VLI_A XAAAAAAAAXXXXXXBBBXXXXXXXAAAAAAAAXXXXXBBBBXXXXXAAA phhhhpphhccpphchhpppphphhchhphchphhhhhchhhchpchhhh 101- 150.dddddddd:.........:.........:...dddd.dddd.......: 151- 200.........:.........:.........:.........:.........: chchhcchh chchpchhhhccphcphcphc AAAAAAAAA AAAAXXXAAAAAAAAAAAAAA RLKVVRKMF-----------------ELRFGEPAPARRSVEQLRGIE--- my_fasta_file +++ +++ + + +++ ||++ | +|+ STAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLA 1VLI_A AAAAAAAAAXXXXXXBBBBBBXXXXXXXXXXXXXXAAAAAAAAXXXXBBB pphphchpchhchhcphchcpppphhhhhhhhchhhhhchpphphhhhhh 151- 200.........ddddddddddddddddd...:.........:.......ddd 201- 250.........:.........:.........:.........:.........: ppchchphhhhhcphphp hppcchchcchccpcphpphhphhp AAAAAAAAAAAAAAXXXX XXXXXXXXXXXXXXXAAAAAAAAAA ---GSRVRATYALLAKQYGVT----WNGRRYDPKDWEKGDTINQCISAAT my_fasta_file + +|+++++ +++++ + ++|+ ++|+ + + +++ + AAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSFA 1VLI_A BBBXXXXXXAAAAAAAAXXXXBBBBBXXXXXXXXXXXXXXXXXAAAAAAA hhhhchhhphpchpchhpchhhhhhchphchhcchhphccphhphchphh 201- 250ddd......:.........:.dddd....:.........:.........: 251- 300.........:.........iiii......:.........:.........: phhhphpchhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhc AAAAAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAA SCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFE my_fasta_file ++ + | ++ + ++ + + |+ + +++ |++ +++| LNPDELKEMVDGIRKTEAE----LKQGITKPVSEKLLGSSYKTTTAIEGE 1VLI_A AAAAAAAAAAAAAXXXXXX XAAAAXXXXXXXXXXXXXAAAAXXXBB hphcchcchhcphccpchc hcpphpchhpcchhppphcppphhcpc 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: hhccphpchccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhc AAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXX IARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPE my_fasta_file |+ ++ + + ++ | + ++ ++++ +| + ++++ IRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPRFFELLTSGV 1VLI_A BBXXXXXXXXXXXXXXBBBBXXXXXXXXXXXXXAAAAAXXXXXXXXXXXX hcphhhcphhpphhhpcpchhpccphhhhchppchpphhhchhchhppph 301- 350.........:.........:.........:.........:.........: 351- 371.........:.........:. chphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXX DAQPVAIPLPVSLGDAGHRSS my_fasta_file |+++ ++++ +|++ + RAVRDIPADTGIVWDDILLKD 1VLI_A XXXXXXXXXXXXBAAAAXXXX chhcchhhcpphhhcchhhcc 351- 371.........:.........:. The seq2struc alignment: my_fasta_file ---> 3HBN_A align_len=308 ene=-99.00 identity=4.220779 hpc_err=46.428570 size_err=0.000000 ins=26 del=3 begin1=0 begin2=0 1- 50.........:.....i...:.........:.........:i........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | | + ++++ + + + +++ ++++ + + +++++ + + + MKVLFRSDSSSQIGF-GHIKRDLVLAKQYSDVSFACLPLE-GSLIDEIPY 3HBN_A XBBBBBBXXXXXXXX AAAAAAAAAAXXXXBBBBBBXXXX XXXXXXXXX hchhhcpcpppphph phhccchhhhcphpchphhhhhhc pphhcchhh 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ ++ ++ ++ ++ || ++++++ + + + + + PVYELSSESIYELINLIKEEKFELLIIDHYGIS----VDDEKLIKLETGV 3HBN_A XBBBXXXXXAAAAAAAAAAAXXXBBBBBXXXXX AAAAAAAAAAAXX hhhchppcphhchhphhcccchchhhhchhphp hcccchhchcpph 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ ++ + + ++ +++ + +++ + ++ + +++|+ + +++ KILSFDDEIKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIRE 3HBN_A BBBBBXXXXXXXXXXBBBBXXXXXXXXXXXXXXXXXXBBBBXXXXXXXXA chhphccchchhhhchhhphphhhchpchcphhhhchchchphphhhhcc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiiiiiiiiii...:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + + +++ ++ | + ++ ++ ++ EFYQEAKENRKKKYDFFICMGGTD------------IKNLSLQIASELPK 3HBN_A AAAAAXXXXXXXXBBBBBBXXXXX XXXAAAAAAAAXXX chhpchccpcccchchhhhhpppc hcphphphhpchhc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:....iiiiiiii.......:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ | + + ++++++ ++ + |++ ++ ++++ + TKIISIATSSSNPNLKKLQKFAKL--------HNNIRLFIDHENIAKLMN 3HBN_A XXXBBBBBXXXXXXAAAAAAAAAX XXXBBBBBXXXXAAAAAA pchhphhppppphphcchpchhch hpphchhhchcphhchhp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: h cchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhph A AAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXX C---RDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSL my_fasta_file + ++|++||+++++| + ++ +++ ++++ + ++++ + + ESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY 3HBN_A XBBBBBBBXXAAAAAAAAXXXXBBBBXXXXXXAAAAAAAAAXXXBBBXXX cppchhhphpphhpchhhhchphchhhhhcppcpphphhhccphchchch 251- 300.ddd.....:.........:.........:.........:.........: 301- 308........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + +|+++ LEHHHHHH 3HBN_A XXXXXXXX hchhhhhh 301- 308........ The seq2struc alignment: my_fasta_file ---> 1TJ7_A align_len=455 ene=-83.00 identity=5.054945 hpc_err=32.747254 size_err=0.000000 ins=0 del=150 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhh cc chp hhhhp XBBXXXXXXXX XX XXB BBBBX MTWLPLNPIPL-------KD----RVS-----------------MIFLQ- my_fasta_file ++++ + + +++ + | LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTA 1TJ7_A XXXXXXXXXXXAAAAAAAXXAAAAXXXAAAAAAAAAAAAAAAAAXXXXXA hhppchpphhcpchcphpcphchchchhcpchhpphhhpchhhphphhph 1- 50.........:.ddddddd.:dddd...ddddddddddddddddd.....d 51- 100.........:.........:.........:.........:.........: hpphchhcphhh hhccpp XXBBBBXXXBBB BBBXXX -------------------YGQIDVIDGAFV-------------LIDKTG my_fasta_file ++|++ + |++ +++ EEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK 1TJ7_A AAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXAAAAAAAAAAAAAXXXXXX ccphphcchhphhhcchchchpphhcpchcchhphhcpchhcchpphpcc 51- 100ddddddddddddddddddd:.........:.ddddddddddddd.....: 101- 150.........:.........:.........:.........:.........: hcphhh hpphhhhhhchppchphhhhchhhp hpp hh XBBBBB XXXXBBBBBBXXXXXXAAAAAAAAA XXX BB IRTHIP-----------VGSVACIMLEPGTRVSHAAVRLAAQ--VGT-LL my_fasta_file +|+++ + ++ ++|+++ |++++| +++|| + + LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMP 1TJ7_A XXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXBBB hhppcpcpcphhpchchhhccphpchhphpcphpphhhcphppppchhhh 101- 150......ddddddddddd..:.........:.........:..dd...d.: 151- 200.........:.........:.........:.........:.........: hhhpchphchhh ppphpphcpcchhhphchhhccch BBBXXXXXBBBB XXXXXXXAAAAAAAAAAAAXXAAA VWVGEAGVRVYA--SGQPGGARSDKLLYQAKLALDEDL------------ my_fasta_file + ++++ + +++ ++ ++++++ ++++ + | GYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAG 1TJ7_A BBBXXBBBBBBBAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXX phphhpchphhphhhhhhhhhchhhcccpchpchhcchchphhphphhhp 151- 200.........:..dd.....:.........:........dddddddddddd 201- 250.........:.........:.........:.........:.........: chchhcch hchchpchhhhccphcphcphcppchch AAAAAAAA AAAAAXXXAAAAAAAAAAAAAAAAAAAA ------RLKVVRKM--------FELRFGEPAPARRSVEQLRGIEGSRVRA my_fasta_file |+ + +++ ++ + + + ++++++++| TAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRF 1TJ7_A XXXXXXAAAAAAAAXXXXXXXXAAAAAAXXAAAAAAAAAAAAAAAAAAAA phhchcccphhphhphhphpcpphcphpccchhhchhphhhhphhhhpch 201- 250dddddd...:....dddddddd.......:.........:.........: 251- 300.........:.........:.........:.........:.........: phhhhhc ph phphppcchchcchccpcphpphhph hpphhhp AAAAAAA AX XXXXXXXXXXXXXXXXXXAAAAAAAA AAAAAAA TYALLAK-----QY--GVTWNGRRYDPKDWEKGDTINQCISA-ATSCLYG my_fasta_file +++| + ++ ++ + +++ | + + | + +++ AEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGA 1TJ7_A AAAAAAAXXXXXXXBBXXXXXXXXXXXXXXXXXXAAAAAAAAXAAAAAAA hcchhhhpppchphhchpcchppppphhhpccphchhchhcpchpchpph 251- 300.......ddddd..dd...:.........:.........:..d......: 301- 350.........:.........:.........:.........:.........: hpchhhhhhphhhhhphhhpp chhphhhchhchhchcphhh AAAAAAAAXXXXXXBBBBBXX XXXXAAAAAAAAAXAAAAAA VTEAAILAAGYAPAIGFVHTG---KPLSFVYDIADIIKFDTVVP------ my_fasta_file | + +| | ++ + | + ++ | LTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVK 1TJ7_A AAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXXBBX hpphhhphcphhhhhpcchpccccphhchhcphhchhhhhhhhhcphphc 301- 350.........:.........:.ddd.....:.........:....dddddd 351- 400.........:.........:.........:.........:.........: chhchhccphpchccchchhhcch hcppcphhchhhhhcchhhhpch AAAAAAAXXXXXXXAAAAAAAAAA AAAAAAAAAAAAAAAAAAAXXXX KAFEIARRNPGEPDREVRLACRDI---FRSSKTLAKLIPLIEDVLAAGEI my_fasta_file ++++++ +|+ + ++ + ++ + ++ +++ |+ +++ + RPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPL 1TJ7_A AAAAAAAAXXXXXXAAAAAAAAAAXXXXAAAAAAAAAAAAAAAAAAXXXX chchpchhppphhphpchhchhhhcphhhcchhhhhpchhhchhcppchh 351- 400.........:.........:....ddd..:.........:.........: 401- 450.........:.........:.........:.........:.........: phhh hhcchphhhh hh hhphpchph XXXX XXXXXXXXXX XX XXXXXXXXX QPPA----PPEDAQPVAI----PL------PVSLGDAGH----------- my_fasta_file + +++ ++ +++ + +++ +++ EDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFA 1TJ7_A XXXXAAAAXXXXXXXXXXAAAAXXAAAAAAXXXXXXXXXAAAAAAAAAAA cchhhpchpchpphhccchhhhhphpphhccchhcpphphpphhphhhhh 401- 450....dddd.:........dddd..dddddd.........ddddddddddd 451- 455..... cpp XXX --RSS my_fasta_file |+ QARLG 1TJ7_A AAAAX phchp 451- 455dd... The seq2struc alignment: my_fasta_file ---> 3B3V_A align_len=310 ene=-77.00 identity=6.129032 hpc_err=47.419354 size_err=0.000000 ins=19 del=5 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | | ++ ++ + + |+++ ++ + +++++++ M--PPITQQATVTAW-----LPQ----VDASQITGTISSLESFTNRFYTT 3B3V_A X XXXXXAAAAAAA XXX XXAAAAAAAAAAAAXXXXXXXXX h hhhppphphphh hhp hchpphppphpphcphppchhpp 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ + +++ ++|+| + +|+++ +++++|++ ++ TSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTIT------ 3B3V_A AAAAAAAAAAAAAAAAAAXXXXXBBBBBBBBXXBBBBBBBBBBX ppphphpchhhpchphhphphhphphcphphpphppcphhhphp 51- 100.........:.........:.........:.........:.........: 101- 150ii.......:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + +| ||+ + + + ++++ +++ ++ ++ ++++++ ++ --GSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGADDDASGIAAVTEVIRV 3B3V_A XXXBBBBBBBBBBBXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA ppchhcchhhhpphhcpphpphppcpphhhphccchpphhhhpchhch 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhp hpchhhh AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAA AAAAAAA LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYG----VTEAAIL my_fasta_file |++ + +++ + +++|+|+ + |+ ++++ +++ + + + LSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLDMT 3B3V_A AAAXXXXXXBBBBBBBBXXXXXXXAAAAAAAAAAAAXXXBBBBBBBXXXX hpcpphphccphhhhhhhhcchphcpppchhpphcpcpcphhphhphchp 151- 200.........:.........:.........:.........dddd......: 201- 250.........:.........:.........:.........:.........: hhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccc AXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAA AAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDRE my_fasta_file + ++ +++ | +++|+ + + ++ + +++ + + ++ |++ NYKGSAQDVVFITDYTDSNFTQYLTQLMDEYLPSLTYGFDTCGYACADHA 3B3V_A XXXXXXXXBBBBXXXXXAAAAAAAAAAAAAAXXXXXBBBBXXXXXXXXAA phcpphpchhhhpchpcpphpphhpphhcchhhphphphcphphhhhchh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hchhhcch hcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhh AAAAAAAA AAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXX VRLACRDI-FRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPV my_fasta_file ++ + + +++ + + + +++++++ + ++ ++ +| + ++ + SWHNAGYPAAMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLA 3B3V_A AAAAXXXXBBXBBXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAA phhphphhhhhhhcpchpchphchhpppcphhppchppphhcchpphphh 251- 300........d:.........:.........:.........:.........: 301- 310.........: phpchphcpp XXXXXXXXXX SLGDAGHRSS my_fasta_file + + |++ YAIEMGSATG 3B3V_A AAAAAAAXXX hhhchpphpp 301- 310.........: The seq2struc alignment: my_fasta_file ---> 2I2X_L align_len=313 ene=-87.00 identity=5.111821 hpc_err=38.019168 size_err=0.000000 ins=55 del=8 begin1=0 begin2=0 1- 50iiiiiiiiii.....iiiii...iiii..:iiiiii...:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file +|++ ++ + + ----------MLDFT-----EAS----LKK------VLTR-----YNVA- 2I2X_L XXXXX AAA AAA AXXX AAAA hhchp chp hcc hhpc hphh 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.i.......:...iiiii.:...i.....:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + +++ +++ + | + | ++ |+ |+ + -----LEKALT-PEEAAEELYPK-----DELIY-PIAKAIFEGEEDDVVE 2I2X_L AXXXXX AAAAAAAAXXX XXXXA AAAAAAAAXXAAAAAA hcchhp hcchhcchhhc cchhh hhhchhhcpcccchhc 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++++ ++ ++ + |+ + + +++ ++++++ |+ + GLQAAIEAGKDPIDLIDDALMVGMGVVIRLYDEGVIFLPNVMMSADAMLE 2I2X_L AAAAAXXXXXXXXXAAAAXAAAAAAAAAAAAAAXXXXAAAAAAAAAAAAA phphhhchpcchhchhcchhhhphphhhchhccphhhhhphhhphchhhc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiii:.........:.......iii hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + ++++ + ++ + + + + ++++ + + + ++ + | +| GIEYCKENSGATPKTKGTVVCHVA-----EGDVHDIGKNIVTALLRA--- 2I2X_L AAAAAXXXXXXXXXXXXBBBBBBB XXXXXXAAAAAAAAAAAA phchhccppphphcpcpphhhhhh cpchhchpcphhphhhch 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iii..:...i.....:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file ++ ++ + + + + ++|+ ++++++ ++++ + NGYNVVDLGRDVPA---EEVLAA-VQKEKPIMLTGTALMTTTMYAFKEVN 2I2X_L XXXBBBBBBBBBXX AAAAAA AAAAXXXBBBBBXXXXXXXXAAAAAA pphphhchpcchhh cchhhh hpccchhhhppphhhppphhhhcchp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcph hchhhhhcchhhhp chphh hhhcchphhhhh AAAAAAAAAAA AAAAAAAAAAAAXX XXXXX XXXXXXXXXXXX CRDIFRSSKTL----AKLIPLIEDVLAAG---EIQPP-APPEDAQPVAIP my_fasta_file +++ + +|+ + +++++++ |+ + ||+++++ |++ DMLLENGIKIPFACGGGAVNQDFVSQFALGVYGEEAADAPKIADAIIAGT 2I2X_L AAAAAXXXXXXBBBBXXXXXAAAAAXXXXBBBXXXXXAAAAAAAAAAXXX chhhcpphchhhhhppphhppchhpphhhphhpcchhchhchhchhhhpp 251- 300.........:.dddd....:.........ddd.....d.:.........: 301- 313.........:... hhhphpchphcpp XXXXXXXXXXXXX LPVSLGDAGHRSS my_fasta_file ++| ++ + + + TDVTELREKFHKH 2I2X_L XXAAAAAAAAXXX pchpchccchhch 301- 313.........:... The seq2struc alignment: my_fasta_file ---> 1I24_A align_len=392 ene=-108.00 identity=6.377551 hpc_err=39.285713 size_err=0.000000 ins=0 del=87 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhp hhhhccchphhhhph pphchhcphh X BBXXXX XXXXXXXXBBBBBXX XBBBBXXXBB -M---TWLPLN--------PIPLKDRVSMIFLQY------GQIDVIDGAF my_fasta_file + + +++ ++| +++ | + +| + ++ GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTP 1I24_A XXBBBBBXXXXAAAAAAAAAAAAXXXBBBBBBXXAAAAAAAAAXXXXXXX ppchhhhppcphhphhphhhhpccphchhhhcphhcchhchphphcphph 1- 50d.ddd....:.dddddddd:.........:....dddddd.........: 51- 100.........:.........:.........:.........:.........: hhhccpphcphhhhpphhhhhhchppchphhhhchhhphpphhhhhpchp BBBBXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXX VLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAG my_fasta_file +++ | + ++ + ++ +++++ + + +++| + + IASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQ 1I24_A XXXAAAAAAAAAAAAXXXXBBBBXXXXXAAAAAAAAAAAXXXBBBBXXXX hhphhcchpchchhppcphchhhpchhchchhhcphcphchcphhhhpcp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: hchhhppphpphcpcchhhphchhhccchchchh XBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAA VRVYASGQPGGARSDKLLYQAKLALDEDLRLKVV---------------- my_fasta_file + |+++ ++++ + + +++| ++ + |+ RSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG 1I24_A XXAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAXXXXBBBBBXXXXXXX cphhhphhccpchhhpphpphhpphphhhhhcchpcchhhhchpphpchp 101- 150.........:.........:.........:....dddddddddddddddd 151- 200.........:.........:.........:.........:.........: cc hh chchpchhhhccphcphcphcppchch AA AA AAAAXXXAAAAAAAAAAAAAAAAAAAA -------RK------MF------ELRFGEPAPARRSVEQLRGIEGSRVRA my_fasta_file ++ + ++ + + |+ ++ |++ +++ TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW 1I24_A XXXXXXXXXBBBBBBXXBBBBBBXXXXXXXAAAAAAAAAAAAAAAAAAAA phphchccphhphphppcpcphhhhcphpphhhhpchhcphphhhphchh 151- 200ddddddd..dddddd..dddddd......:.........:.........: 201- 250.........:.........:.........:.........:.........: p h hhhhcphphphppcchchcchccpc phpphhphhp A A AAAAAAXXXXXXXXXXXXXXXXXXX AAAAAAAAAA -T-------Y---ALLAKQYGVTWNGRRYDPKDWEKGD-TINQCISAAT- my_fasta_file + + + ++ + ++ +| ++++| ++| ++ +| ||+ GIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVG 1I24_A XXBBBBBBBXBBBXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAX phchpchppphhhphcpccpchhcchcpchchchhhpphhpchhhphhhp 201- 250d.ddddddd:ddd......:.........:........d:.........d 251- 300.........:.........:.........:.........:.........: phhhphpchhhhh hphhhh hphhhppchhph AAAAAAAAAAAAA XXXXXX BBBBBXXXXXXA -----------------SCLYGVTEAAILA-AGYAPA-IGFVHTGKPLSF my_fasta_file +++++++++ | ++|++ ++|+++ + | HPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 1I24_A XXBBBBXXXXXBBBBBBAAAAAAAAAAAAAXXXXXXXBBBBBBXXBBBBA hhhphhpcppppcphhchccphphhchhhhphhchpchchhpphpcphph 251- 300ddddddddddddddddd..:.........:d......d.:.........: 301- 350.........:.........:.........:.........:.........: hhchhchhchcphhhchhc hhccphpchccchchhhcchhcppcphhc AAAAAAAAXAAAAAAAAAA AAAXXXXXXXAAAAAAAAAAAAAAAAAAA VYDIADIIKFDTVVPKAFE--IARRNPGEPDREVRLACRDIFRSSKTLAK my_fasta_file +++ ++ +| + +++ + + +++| + ++|++ + + + ++ + NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPH 1I24_A AAAAAAAAAAAAXXXXXXXBBBBXXXXXXXXXXXXXXXXXAAAAXXXXXX pchhphhpchppchphchcchphhphchchcchhhphchpchhchphchh 301- 350.........:.........dd........:.........:.........: 351- 392.........:.........:.........:.........:.. hhhhhcchhhhpchphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file +++++++ + ++ ++++|+ + + + ++ + |+ YLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 1I24_A XXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXX hhpcphhcphhphhhphccchcpcphhhphphcchphcpcph 351- 392.........:.........:.........:.........:.. The seq2struc alignment: my_fasta_file ---> 2OXE_A align_len=456 ene=-41.00 identity=3.947368 hpc_err=34.429824 size_err=0.000000 ins=4 del=151 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhph hhhccchphhhhphpphch hcphhhhh ccpph X BBXXXXX XXXXXXXBBBBBXXXBBBB XXXBBBBB BXXXX M-TWLPLNP---IPLKDRVSMIFLQYGQIDV---IDGAFVLI---DKTGI my_fasta_file + + ++++ +++++++ ++ ++++ ++ || +| | + KEVCYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFLLYTNENPNNF 2OXE_A XBBBXXXXXBBBXXXXXXXXXXXXXXXXXXXAAAAXXBBBBBXXXXXXXX cchhhpphphhpccchhhpphpchhchhhhphcchcpchhhhppcphpph 1- 50.d.......ddd.......:.........:.ddd.....:..ddd....: 51- 100.........:.........:.........:.........:.........: cph hhhpphhhhhhc hppchphhhhchhhphpphh BBB BBXXXXBBBBBB XXXXXXAAAAAAAAAXXXBB RTH-----------IPVGSVACIMLE----PGTRVSHAAVRLAAQVGTLL my_fasta_file + + ++ ++++ + + + +| +++ +++ +++ QLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEK 2OXE_A BBBXXXXXAAAAAXXXXXXXBBBBBBXXXXXXXXXXAAAAAAAAAXXXXX phhpppchcphchpphphcccpchhhhphhcchccphhpchhcchhchcc 51- 100...ddddddddddd.....:......dddd.........:.........: 101- 150...iiii..:.........:.........:.........:.........: hhhpchphchhhppphpphcpcchhhphchhhccchchchhcchhchchp BBBXXXXXBBBBXXXXXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAX VWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFG my_fasta_file |+ +|+ + + + + + +++++ + + + + VNC----ICVDWRHGSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSLE 2OXE_A BBB BBBBXAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXX hph hhhchchppchhhpphhpphchhphcphhhhphhppphphphc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: c hhhhccphcphcp h X XAAAAAAAAAAAA A E------PAPARRSVEQLRG-----------------------------I my_fasta_file + +|+ + |++| + DVHVIGHSLGAHTAAEAGRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPS 2OXE_A XBBBBBBXAAAAAAAAAAAAXXXXXXBBBBBXXXXXXXXXXXXXXXXXXX chhhhphphphhphhchpcchppchpchpphchhphhhpcchcchchchp 151- 200.dddddd..:.........:ddddddddddddddddddddddddddddd: 201- 250.........:.........:.........:.........:.........: cpp chc hphhhhhc phphph ppcchchcchccpcph AAA AAA AAAAAAAA AXXXXX XXXXXXXXXXXXXXAA EGS-----RVR--ATYALLAK--QYGVTW-----NGRRYDPKDWEKGDTI my_fasta_file ++ ++ + +|++ + | || ++| ++ ++ + DAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGCKKNVLST 2OXE_A XXXBBBBBXXXBBXXXXXXXXBBXXXXXXBBBBBXXXXXXXXXXXXXXXX chhhhchhhpcpphhhhphphphppchphhchhhpppcchhphccphhpp 201- 250...ddddd.:.dd......:.dd......ddddd.....:.........: 251- 300.........:.........:.........:.........:.........: pphhphhpphhhphpchhhhhhphhhhhp hh hppchhphhhchh AAAAAAAAAAAAAAAAAAAAAXXXXXXBB BB BXXXXXXAAAAAA NQCISAATSCLYGVTEAAILAAGYAPAIG-FV-----HTGKPLSFVYDIA my_fasta_file + +| + + + +| + + |++++ ++ + ++++ ++++ ++ ITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQES 2OXE_A XXXXXAAAAAAAAAAAAAAAXXXXXXXBBXXXAAAAAXXXXXXXXXXXXX hpchcphhcphpphhphphhcphchhppphhphcphhphhhhphcchpcp 251- 300.........:.........:.........d..ddddd..:.........: 301- 350.........:.........:.........:.........:.........: chhchcphhhchhchhc cphpchccch chh AAAXAAAAAAAAAAAAA XXXXXXXAAA AAA DIIKFDTVVPKAFEIAR-----RNPGEPDREV-----------RLA---- my_fasta_file + ++++ ++ + ++++ + ++ KCFPCPAEGCPKMGHYADQFKGKTSAVEQTFFLNTGESGNFTSWRYKVSV 2OXE_A XXXXXXXXXXXXXXXXXBBBBBXXXXXXXXXXBBBBBBBBBBBXXXBBBB chhhhhhcphhchphhhcphcpcpphhcpphhhpppcppphpphchchph 301- 350.........:.......ddddd.......:..ddddddddddd...dddd 351- 400.........:.........:.........:.........:.........: hcchhcpp cphh chhhhhcc h AAAAAAAA AAAA AAAAAAAA A ------CRDIFRSS--------KTLA--------KLIPLIED-------V my_fasta_file ++ + + + + ++ + +++ + TLSGKEKVNGYIRIALYGSNENSKQYEIFKGSLKPDASHTCAIDVDFNVG 2OXE_A BBBBBBXXXXXXXXBBBBBBBBXXXXBBBBBBBBXXXXXXXXBBBBBBBX phppccchpphhchhhhpppcppcphchhcpphchchphphhhchchphp 351- 400dddddd...:....dddddddd....dddddddd.....:..ddddddd: 401- 450.........:.........:.........:.........:.........: hhh pchph hhhhcchphh hhhhhhphpch AAX XXXXX XXXXXXXXXX XXXXXXXXXXX LAA----------GEIQP-----PAPPEDAQPV-----AIPLPVSLGDA- my_fasta_file + + + + ++ ++ + ++ ++++++ KIQKVKFLWNKRGINLSEPKLGASQITVQSGEDGTEYNFCSSDTVEENVL 2OXE_A XXXBBBBBBBBBBXXXXXBBBBBXXXXXXXXXXBBBBBXXXXXXXXXXXB chpchchhhpccphphpchchphpphphpppccppchphhppcphccphh 401- 450...dddddddddd.....ddddd......:...ddddd.:.........d 451- 456...... phcpp XXXXX -GHRSS my_fasta_file +++ QSLYPC 2OXE_A BXXXXX pphhhh 451- 456d..... The seq2struc alignment: my_fasta_file ---> 2CF5_A align_len=358 ene=-111.00 identity=4.189944 hpc_err=43.296090 size_err=0.000000 ins=6 del=53 begin1=0 begin2=0 1- 50.........:.........:....i....:.......iiii........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpph XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXX -MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSV my_fasta_file + +++++ +++ ++ ++++ + +++ + + ++ ++ + + + AERKTTGWAARDPSGILSPYTYTL-RETGPEDVNIRI----ICCGICHTD 2CF5_A XXXBBBBBBBXXXXXXBBBBBBBX XXXXXXBBBBBB BBBBBXAAA hcccppphhhcchpphhphhphph ccpphcchphch hhhphhhpc 1- 50d........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhhchppchphhhhchhhphpphhhh hpchphchhhpp ph BBBBBBXXXXXXAAAAAAAAAXXXBBBB BXXXXXBBBBXX XX ACIMLEPGTRVSHAAVRLAAQVGTLLVW-----VGEAGVRVYASG---QP my_fasta_file +++ ++ ++ |++ ++|| + ++ |++|+ + + LHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCC 2CF5_A AAAAXXXXXXXXXXXXXXXBBBBBBBBBXXXXXXXXXXXBBBBXXBBBXX hhppcpchphpphhhhhphchhpchhchppchpchphpchhphphhhphh 51- 100.........:.........:........ddddd......:.....ddd.: 101- 150.........:.........:.........:.........:.........: pphcpcchhhphchhhc cchchchhcchhchchpch hhh cc XXXAAAAAAAAAAAAXX AAAAAAAAAAAAAAAAXXX AAA AA GGARSDKLLYQAKLALD--EDLRLKVVRKMFELRFGEP----APA---RR my_fasta_file || ++ ++ ++ + ++ + + + + |+ ++ ++ GGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIP 2CF5_A XXXAAAAXXXXXXXXXXBBXXXXXXXXXXXXXXXXXXXBBBBXXXBBBXX pphphhccchcphhhcchhphpchhhppphpppphhchphhhpchhhchh 101- 150.........:.......dd:.........:........dddd...ddd.: 151- 200.........:.........:.........:.........:.........: phcphcphcppchchphhhhhcphphphppcchchcchccpcphpphhph AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA SVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA my_fasta_file +++ ++++ ++++ + + ++++ + ++ +++++ |+ + ++| EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIA 2CF5_A XXXXAAAAXXXXXAAAAAAAAAAAXXXXXXXXBBBBBXXXAAAAAAAAAA cphhhcphhhhhhhphphhphhphhphcphphcpphhphpphphhphchh 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.......i.:.........:.........: hpphh hphpchhhhhhphhhhhphhhppchhphhhchhc AAAAA AAAAAAAAAAXXXXXXBBBBBXXXXXXAAAAAAA ATSCL------YGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIAD----- my_fasta_file ++++ + + +++ + + + | + +++ + KAMGHHVTVISSSNKKREEALQDLGAD-DYVIGSDQAKMSELADSLDYVI 2CF5_A AAAXXBBBBBBXXXXAAAAAAXXXXXX XBBBXXXAAAAAAXXXXBBBBB chhphhhphhppppccccchhpchphc chhhppcphchpchhcphchhh 201- 250.....dddddd........:.........:.........:.....ddddd 251- 300.........:.........:.........:.........:.........: hhchcphhhchhch hccphpchccchchhhcchh cp AAXAAAAAAAAAAA AAXXXXXXXAAAAAAAAAAA AA -IIKFDTVVPKAFEI---------ARRNPGEPDREVRLACRDIF----RS my_fasta_file + + ++ ++ +++ + ++++| + ++ + DTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSF 2CF5_A BXXXXXXXXAAAAXXBBBBBBBBBXXXXXXXXXXXAAAAAAAXXBBBBXX cphhhhhhhchhhphhchcpchhhhphhpphhphhphhhhhpcchhppph 251- 300d........:.....ddddddddd.....:.........:....dddd.: 301- 350.........:.........:.........:.........:.........: pcphhchhhhhcchhhhpchph hhh hcchphhhhhhhhph AAAAAAAAAAAAAAAAXXXXXX XXX XXXXXXXXXXXXXXX SKTLAKLIPLIEDVLAAGEIQP-----PAP-----PEDAQPVAIPLPVSL my_fasta_file + + +++ |+ +++|++ + + ++ ++ + + |++ IGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVD 2CF5_A XXXAAAAAAAAAAAAAXXXXXXBBBBBXXXAAAAAAAAAXXXXXXBBBBB hpphccpcchhchhcccphpphhchhchchhpphhcchccpchchchhhc 301- 350.........:.........:..ddddd..:ddddd....:.........: 351- 358........ pchphcpp XXXXXXXX GDAGHRSS my_fasta_file + + ++ + VEGSNLDA 2CF5_A XXXXXXXX hcppphch 351- 358........ The seq2struc alignment: my_fasta_file ---> 2W4M_A align_len=305 ene=-91.00 identity=6.557377 hpc_err=41.967213 size_err=0.000000 ins=55 del=0 begin1=0 begin2=0 1- 50.ii......:.....i...:...iiii..:iiiii....:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + | + +| ++ | + + + |+++ +++ + | N--LYFQSMGLSRVR-AVFFDLD----NTL-----IDTAGASRRGMLEVI 2W4M_A X AAAAAAXXXXXX BBBBXXX XXX XXAAAAAAAAAAAAA p hhhpphphpchc hhhhchc pph hcphphpccphhchh 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...iiiii.:...iiii..:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + +++++ +|+ + +++++ + + +++ + |+++ KLLQSKYHYKEEAEIICDKVQVK-----LSKEC----FHPYNTCITDLRT 2W4M_A AAAAAXXXXXXAAAAAAAAAAAA AAXXX XXXXXXXAAAAAA chhppchhhccchchhhcchphc hpcch hhhhpphhpchcp 51- 100.........:.........:.........:.........:.........: 101- 150......ii.:.........:....iii..:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ +| + + + + + +++ + ++ + | + ++ ++++ SHWEEA--IQETKGGAANRKLAEE---CYFLWKSTRLQHMTLAEDVKAML 2W4M_A AAAAAA AAAAAXXXXXAAAAAA AAAAAAAAAAAXXXXXAAAAAAA phhcch hpcpcpphhpcchhcc hhhhhcppchphhphhcchchhh 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiii......:....iiiiiiiiiiii...:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++ ++ || ++ + |+ + |++ TELRK--------EVRLLLLTNGD------------RQTQREKIEACACQ 2W4M_A AAAAA AXBBBBBBXXX AAAAAAAAAAXXXX pchcc chchhhhpppc cpppccchchhhhp 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iiiiiiii.......:.........:....i....: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + ++ | | ++ +| +++ + ++ + +++ ++ + +++ SYFDAVVVGGEQRE--------EKPAPSIFYYCCNLLGVQPGDC-VMVGD 2W4M_A XXXXBBBBXXXXXX XXXXAAAAAAAAAAAXXXXXXB BBBBX phhchhhhppcpcc cchhhphhhhhhphhphphpch hhhpc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file ++ +++ ++| |+ + ++++++++ ++++| ++ + ++ + +|+ + TLETDIQGGLNAGLKATVWINKNGIVPLKSSPVPHYMVSSVLELPALLQS 2W4M_A XXXXAAAAAAAAXXXBBBBBXXXXXXXXXXXXXXXBBBXXXXXAAAAAAA phcpchppphphphchphhhpcpphhhhcpphhhhhhhpphhchhhhhpp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +++ + IDCKV 2W4M_A AXXXX hchch 301- 305..... The seq2struc alignment: my_fasta_file ---> 2QU7_B align_len=310 ene=-116.00 identity=4.838710 hpc_err=40.322581 size_err=0.000000 ins=36 del=5 begin1=0 begin2=0 1- 50.........:.....iiiii...iiii..:iiiiii...:ii.......: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + + |+ + ++ + + + ++++ RSNIIAFIVPDQNPF-----FTE----VLT------EISH--ECQKHHLH 2QU7_B XBBBBBBBBXXXXAA AAA AAA AAAA AAXXXXXB cpphhhhhhhcpphh hpc hhp chph chpchhhh 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppc hphhhhchhhphpphhhhhpchphchhhppphpphc BBBBBXXXX XXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXA CIMLEPGTR--VSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGAR--- my_fasta_file + + ++ + + ++ ++ + + + + VAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREWLKIPIMT 2QU7_B BBBBBXXXXAAAAAAAAAAAAAXXBBBBBBXXXXXXXXXXXXXXXXXBBB hhhhppccpcccppchhcphhppphphhhhhhhcpchphccchhchhhhp 51- 100.........dd........:.........:.........:.......ddd 101- 150.........:.........:.........:.........:.........: pcchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppch AAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAA SDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRV my_fasta_file +| +|+ + | ++ ++ + ++ + ++ + +++ + ++++ | ++ LDRELESTSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIG 2QU7_B BXXXXXXXXXXBBBBXAAAAAAAAAAAAAXXXXXXBBBBBXXXXXAAAAA hccchcppphhphphcpcchhhhhpcchhcpphcchphhhhphphppphp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........iiiiii....:.........: chphhhhhcphphphppcchchcchccpcphpphhphhpphhhphpchhh AAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAA RATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAI my_fasta_file |+ + ++|+ ++++++ + + + + + +| + +++++ ++ RKNGYNKAISEFDLNVNPSLIHYSDQQLG------TNAQIYSGYEATKTL 2QU7_B AAAAAAAAAAAXXXXXXXXXBBBXXXXXX AAAAAAAAAAAAAAA ccpphpchhpchchphphphhhhpcpphp pphphhpphchpcph 151- 200.........:.........:.........:.........:.........: 201- 250..ii....i:...iiii..:........i:.........:.........: hhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchcc AAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXA LAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDR my_fasta_file |+ ++ + | | + + ++ + + +++|+ +++++ |++| LS--KGIK-GIVA----TNHLLLLGALQ-AIKESEKEIKKDVIIVGFDDS 2QU7_B AA XXXX BBBB XXAAAAAAAAA AAAAXXXXXXXXXBBBBBXXX hp cphc phhh pphhhhhphhp hhccpccchccchhhhphccp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:........iiiii......:.........: chchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhh AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXX EVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPV my_fasta_file + + ++ ++ |+ ++ +++ + + ++++ + +++ YWNEIYTPKLTVISQPVKEMGQVAAKMI-----YKLIKGKDVTSIKLSTK 2QU7_B AAAAAXXXXXBBBBXXAAAAAAAAAAAA AAAAXXXXXXXBBBXXB hhpchhphchphhpphhcchpphhhchh hchhcpcchpphchppc 251- 300.........:.........:.........:.........:.........: 301- 310.........: phpchphcpp XXXXXXXXXX SLGDAGHRSS my_fasta_file + + + + LIIRESCSFN 2QU7_B BBXXXXXXXX hhhccphphp 301- 310.........: The seq2struc alignment: my_fasta_file ---> 3DHU_A align_len=422 ene=-105.00 identity=5.213270 hpc_err=33.412322 size_err=0.000000 ins=0 del=117 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph h hhccc hp hhhhphpphchhcphhhh XBBXXXXX X XXXXX XB BBBBXXXBBBBXXXBBBB MTWLPLNP----I----PLKDR-----VS---MIFLQYGQIDVIDGAFVL my_fasta_file +|+|++ +++ ++| + + + +++ + QTQLRNEMIYSVFVRNYSEAGNFAGVTADLQRIKDLGTDILWLLPINPIG 3DHU_A XXXXXXXXBBBBXAAAAXXXXXAAAAAXXAAAAAAAXXXBBBBXXXXXXX ppphcpchhhphhhcphpchpphhphphchpchcchppchhhhhhhphhp 1- 50........dddd.dddd..:..ddddd..ddd.......:.........: 51- 100.........:.........:.........:.........:.........: hccpphcphhhhpphhhhhhchppch phhhhchhhphpp hhh BBXXXXBBBBBXXXXBBBBBBXXXXX XAAAAAAAAAXXX BBB IDKTGIRTHIPVGSVACIMLEPGTRV---SHAAVRLAAQVGT---LLV-- my_fasta_file ++ + +++| ++++ ++ | + + ++| + +| |+ |+ EVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVY 3DHU_A XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXBBBBBBXX chpccpphpphhhhcchcphphchpphhchchhpcchhchphchhhchhh 51- 100.........:.........:......ddd:.........:..ddd...dd 101- 150.........:.........:.........:.........:.........: hh pc hphchhhppphpphcpcchhhph chhhccchchchh BB XX XXXBBBBXXXXXXXAAAAAAAAA AAAXXAAAAAAAA -WV--GE-----AGVRVYASGQPGGARSDKLLYQA--KLALDEDLRLKVV my_fasta_file + +++ | + + ++ + + + ++ +++ |++++ NHTSPDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQI 3DHU_A XBBXXXXAAAAAXXXXXXXXXXXXXXXXXXXXXXXBBXXXXXAAAAAAAA phpphcphhhpchhchhhhchcpphppchpchpchcchchphhchhphph 101- 150d..dd..ddddd.......:.........:.....dd..:.........: 151- 200.........:.........:.........:.........:.........: cchhch chpchhhhccphcphcphc p pchchp AAAAAA AAXXXAAAAAAAAAAAAAA A AAAAAA RKMFEL-----------RFGEPAPARRSVEQLRGIE---G----SRVRAT my_fasta_file + + ++| + ++ ++ + DTLLYWSQFVDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSG 3DHU_A AAAAAAXXXXXBBBBXXXXXXXAAAAAAAAAAAAAAXXXXBBBBXXXXAA cphhhhpphhcphchchhhhhhhchhhchccphphchhcphhhhcphppp 151- 200......ddddddddddd..:.........:......ddd:dddd.....: 201- 250.........:.........:.........:.........:.........: hhhhhcphphphpp cchchcchccpcphpphhph hpphhhphpc AAAAAAAXXXXXXX XXXXXXXXXXXXAAAAAAAA AAAAAAAAAA YALLAKQYGVTWNG----RRYDPKDWEKGDTINQCISA--ATSCLYGVTE my_fasta_file ++ +| |++ + +++ + +++ ++++ + +++| + FIEELRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDL 3DHU_A AAAAAAAXXXXXXXAAAAAXXXXBBBXXXXAAAAAAAAXXXXXAAAAAAA hhcchcppphpphpcpchhphhchphchchhpchcchhppcpphcchhch 201- 250.........:....dddd.:.........:........dd.........: 251- 300.........:.........:.........:.........:.........: hhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhc AAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAA AAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIAR----- my_fasta_file ++++| ++ ++ +++ + + ++ ++ ++ |+ ++| + LQRQDATFPGNYVKMRFLENHDNARMMSLMHSKAEAVNNLTWIFMQRGIP 3DHU_A AAAAAXXXXXXXBBBBXXXXXXXXXAAAAXXXAAAAAAAAAAAAAXXXBB hpcpchphhpphhchchhcphcphchhphhhpchchhpphphhhhpcphh 251- 300.........:.........:.........:.........:.....ddddd 301- 350.........:.........:.........:.........:.........: cphpchccchchhhcchhcppcphhchhhhhcchhhhpch XXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXX ---------RNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEI- my_fasta_file + ++++ + + +|+ + +| + +| + LIYNGQEFLAEHQPSLFDRDTMVADRHGDVTPLIQKLVTIKQLPLLRAAD 3DHU_A BBBXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAXXXXXXXXB hhhpppchhhchphphhcccphhhcchpchphhhpchhphcphhhhchhc 301- 350ddddddddd:.........:.........:.........:.........d 351- 400.........:.........:.........:.........:.........: phhhh hc chphh hhhhh hphp XXXXX XX XXXXX XXXXX XXXX -----QPPAP-------PE-------DAQPV-----AIPLP-----VSLG my_fasta_file ++++ + ++ ++ ++ YQLAVVEEGIVKITYRAAGEALTAWIPLKGQVTAVATKLAAGSYQNLLTD 3DHU_A BBBBBXXXXXBBBBBBBXXBBBBBBBXXXXXBBBBBXXXXXBBBBBXXXX hphhhhccphhchphchhpchhphhhhhcpphphhhpchhhpphpphhpc 351- 400ddddd....:ddddddd..ddddddd...:.ddddd...:.ddddd...: 401- 422.........:.........:.. chp hcp p XXX XXX X -----DAG-----HRS-----S my_fasta_file ++| + + + GPTEVVDGKLTVDGQPVLIKYV 3DHU_A BBBBBXXXBBBBBXXXBBBBBX phpchhcpchphcpphhhhchh 401- 422ddddd...ddddd...ddddd. The seq2struc alignment: my_fasta_file ---> 1K27_A align_len=312 ene=-116.00 identity=5.128205 hpc_err=41.346154 size_err=0.000000 ins=39 del=7 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphhhhccchphhhh phpphchhcphhhhhccpphcphhh X BBXXXXXXXXXXXXBBBBB XXXBBBBXXXBBBBBBXXXXBBBBB -M---TWLPLNPIPLKDRVSMIFL-QYGQIDVIDGAFVLIDKTGIRTHIP my_fasta_file + +++ ++ +++ ++++ ++ + + | |+ + + AVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLL 1K27_A XXBBBBBBXXXXXXXXXXBBBBBBXXXXXXXXXXXXBBBBBBXXBBBBBB hhchphhpppphcchchhcpcpcchhcphhpchpchhhhpchcphchhhh 1- 50d.ddd....:.........:....d....:.........:.........: 51- 100.........:.........:.........:...iii...:.........i hpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphc XXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXA VGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGAR my_fasta_file ++++ + +| ++++|+ + + +|++ | | ++ +++ ++ ARHGRQHTIMPSKVNYQANIWALKEEGCTHVIV---TTACGSLREEIQP- 1K27_A BXXXXXXXXXXXXXXAAAAAAAAAAXXXXBBBB BBBBBBXXXXXXX hchpcphphhhpchphphphhhhcccphphhhh pphhpphccchph 51- 100.........:.........:.........:.........:.........: 101- 150iiii.....:.........:.........:.........:.........: pcchhhphchhhccchchchhcchhchchpchhhhccphcphcphcppch AAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAA SDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRV my_fasta_file +++ + ++++|+ +++ + + ++ +++ +++++ + |+ ----GDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE 1K27_A XXBBXXXBBBBBXXXXXXXXXXXXXXXXXXBBXXXXXXXXXAAAAA pchhhhcphhccpphchpphhcpphphhcphhhhhhhchhhhcpcc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: chphhhhhcphphphppcchchcchccpcphpphhphhpphh hphpch AAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAA AAAAAA RATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCL--YGVTEA my_fasta_file + +++ +++ ++ | + + ++++ + +++|+ VLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVP 1K27_A AAAAAAAAXXXXBBXXXBBBBBXXXXXXXAAAAAAAAAXXXXBBBXXAAA hhhcphcchphchhpcpphhphcphchppchcphhhcphphchhphpphh 151- 200.........:.........:.........:.........:..dd.....: 201- 250.........:.........:.iiiiiiiii.iiiiiiiiiiiii.....: hhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphpch AAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXX AILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEP my_fasta_file + | +|+ + + ++++++ +++ ++ EVVLAKEAGICYASIAMATDY---------D-------------CWKEHE 1K27_A AAAAAAAXXXBBBBBBBBBBX X XXXXXX chhhhcchphhhhphhhhpch c hhcchc 201- 250.........:.........:.........:.........:.........: 251- 300.iii.....:.........:.........:iiiiii...:.........: ccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhh XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXX DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPL my_fasta_file + + +| +| + ++ ++++ |+ + +++++ + E---AVSVDRVLKTLKENANKAKSLLLTTI------PQIGSTEWSETLHN 1K27_A X AAAAAAAAAAAAAAAAAAAAAAAAAA XXXXXAAAAAAAAA c hhphcchhcphccphpchcphhhpph hphpppchpcphhp 251- 300.........:.........:.........:.........:.........: 301- 312.........:.. hhphpchphcpp XXXXXXXXXXXX PVSLGDAGHRSS my_fasta_file + + +++ LKNMAQFSVLLP 1K27_A AAAXXBBXXXXX hcphhphphhhh 301- 312.........:.. The seq2struc alignment: my_fasta_file ---> 2FYW_A align_len=312 ene=-101.00 identity=5.769231 hpc_err=40.384614 size_err=0.000000 ins=45 del=7 begin1=0 begin2=0 1- 50.ii......:.....iii.:.........:.........:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + |+++ +++ + + +++|++ |++ +|++ N--AMLASEVIQAYE---AFCPQEFSMEGDSRGLQIGTLD-----KGIQ- 2FYW_A X XXXAAAAAAAAA AAXXXXXXXXXXXXBBBBXXXX XXXX p hhhhpchhphhc hhhhpchphcpcpcphphpphc cphp 1- 50.........:.........:.........:.........:.........: 51- 100.....ii..:.........:.........:...iiii..:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + | + + +++|++| +|++| | +|+ + + RVMVA--LDIREETVAEAIEKGVDLIIVKHAPI----FRPIKDL------ 2FYW_A BBBBB XXXXAAAAAAAAAXXXXBBBBXXXXX XXXXXXX chhhh hchcccphhchhccphchhhhchhhh hchhcch 51- 100.........:.........:.........:.........:.........: 101- 150iiiii....:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++ ++ + ++++ ++ + + + + + ++ +++++ + -----LASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIE 2FYW_A XXXXAAAAAAAAAAAXXXBBBBXXAAAAAXXXXAAAAAAAAAXXB hhpchppphhhchhchchhhhhphpphchhcpphpchhhphhphc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphp chhhhh AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAA AAAAAA LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVT---EAAILA my_fasta_file ++++++ + ++ + + + + + + + ++ + ++++ ETTYLQETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQEDD 2FYW_A BBBBBBBBBXXBBBBBBBBBBBBBAAAAAAAAAAAXXXXXXBBBXXXXXX cpphhpcpphccphpchpphphpphhchhpphcphhchcphchhhhpccc 151- 200.........:.........:.........:.........:.ddd.....: 201- 250.........:.........:.........:.........:.........: hphhhhhphhhppchhphhhchhchhch cphhhchhchhccphpch XXXXXXBBBBBXXXXXXAAAAAAAAAXA AAAAAAAAAAAAXXXXXX AGYAPAIGFVHTGKPLSFVYDIADIIKF----DTVVPKAFEIARRNPGEP my_fasta_file + +++ | ++|| +| +++++ ++ + + +++ LQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGLLA 2FYW_A XXXBBBBBBBBXXXXXXXAAAAAAXXXXBBBBXXXXAAAAAAAAAXXXBB hpchhpchhhhpppppphhcchhhcphchhhppchhhhphpchhpcphhh 201- 250.........:.........:........dddd.......:.........: 251- 300.iiii....:.........:.........:iiiiiiiiiiiii......: ccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhh XAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXX DREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPL my_fasta_file + + +++|+++++ + + +++ +++ + + | L----DPGHYIEVIFVEKIAALLSQWKEDK-------------GWSIDIL 2FYW_A B BXXXXXXXAAAAAAAAAAAAAAAAA XXXXBBB h chphhhchhhhcchhhhhpphcccc phphchh 251- 300.........:.........:.........:.........:.........: 301- 312.........:.. hhphpchphcpp XXXXXXXXXXXX PVSLGDAGHRSS my_fasta_file |+ ++ +++ PSQASTNPFHHI 2FYW_A BXXXXXXXXXXX hpphppphhhhh 301- 312.........:.. The seq2struc alignment: my_fasta_file ---> 3C7T_B align_len=315 ene=-104.00 identity=5.714286 hpc_err=39.682540 size_err=0.000000 ins=56 del=10 begin1=0 begin2=0 1- 50iiiiiiiiiiiiiiiiiiiiii.iii.iii......iii:iiiii....i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + + | ----------------------R---R---WVFALR---H-----GERV- 3C7T_B X B BBBBBB X XXXA c c hhhhhc h pcch 1- 50.........:.........:.........:.........:.........: 51- 100iiiii....:.iiii....:ii.......:...ii....:.........: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file ++|+++ + + +++++ + + + ++ ++++ |++ -----DLTYGP----WVPHC--FENDTYVRKDL--NLPLKLAHRAGGKGG 3C7T_B AAAXXX AAAAA BBXXBBXXXXX XXXXXXXXXXXAAAA chphph hhhhh hcpcphhccch phhhchhhchppcpp 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.......iiii........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file |++ + | +++ +++++ | + ++++ + ++ +| ++++ YVKDTPLTRLGWFQAQLVGEGMRMAGV----SIKHVYASPALRCVETAQG 3C7T_B AAAXXXXXAAAAAAAAAAAAAAAAXXX XXXBBBBXXXAAAAAAAAA hhccphhpchphhphphhpcphchhph phchhhhphhhchhcphpp 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....ii...:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file |+ +++++++ + | + |+ ++ + + + +++++|+|+ FLDGLRADPSVKIKVEPGLFEFKN--WHMPKGIDFMTPIELCKAGLNVDM 3C7T_B AAAAAXXXXXXXBBBXXXXXXXXX XXXXXXXXXXXAAAAAAXXXXXXX hhcphchchphchchchphhchcp hhhhcphchhphhchhchphphch 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhppchhphhhchhchhchcphhhchhchhccp hpchccch XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXX XXXXXAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRN---PGEPDREV my_fasta_file + + + + + + +++ + +++ + ++|++ | |+ + ++ TYKPYVEMDASAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLD 3C7T_B XXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXXXXXXXBBBBBXXXAAA phchhhchchphcphcchhccpchhhphhhpcpcccppphhhhphhhphc 201- 250.........:.........:.........:.........ddd.......: 251- 300.........:.........:.........:.........:.........: chhhcchhcppcphhchhhhhcchhhhpchph hhh hcchphhh AAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXX XXX XXXXXXXX RLACRDIFRSSKTLAKLIPLIEDVLAAGEIQP------PAP-PEDAQPVA my_fasta_file +++ ++ +++++ +| +| +++ + + + + QMVGALHRLRDDMEDVQPYEIGRNLLKVPYCALGAMRGKPWDVVSPPCPP 3C7T_B AAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXBBBBBBXXXBBXXXXXXX phhphhhchccchcchphhchpcphhchhhhhhphhcpchhchhphhhhh 251- 300.........:.........:.........:..dddddd.:.d.......: 301- 315.........:..... hhhhhphpchphcpp XXXXXXXXXXXXXXX IPLPVSLGDAGHRSS my_fasta_file + +++|+ +++++++ SINSSSGRFDWRILI 3C7T_B XXXXXXXXXXXXXXX phpppppchchchhh 301- 315.........:..... The seq2struc alignment: my_fasta_file ---> 2E1V_B align_len=445 ene=-74.00 identity=4.269663 hpc_err=34.606743 size_err=0.000000 ins=0 del=140 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph hhh ph hhhccch phhhh p X BB XXX XX XXXXXXX BBBBB X M-------TW------LPL----NP----IPLKDRV---SMIFL---Q-- my_fasta_file |++ ++ | + + + ILTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRS 2E1V_B XBBBBBBBBBXXXXXXXXXBBBBXXAAAAXXXXXXXBBBBBBBBXXXXAA hhphhcppphphhhcphpccphphphhchhhhcphhhpphhhhchhhpcp 1- 50.ddddddd.:dddddd...dddd..dddd:......ddd:....ddd.dd 51- 100.........:.........:.........:.........:.........: h pphchhcphhhh hccpphcphhhhpph h X XBBBBXXXBBBB BBXXXXBBBBBXXXX B ----Y-------------GQIDVIDGAFVL--IDKTGIRTHIPVGSV--A my_fasta_file + + + +|+ | + + +| + QFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAV 2E1V_B AAAAXAAAAAAAAAAAAAXXXXXXXXBBBBXXXXXXXXBBBBXXXXXBBB phpcphhhphchphphphchhhhhhpchhhhhhhpcchchhhhcpcphhh 51- 100dddd.ddddddddddddd.:.........:dd.......:.......dd: 101- 150.........:.........:.........:.........:.........: hhhhc hppchph hhhchhhphpphhhhhpchp h ch BBBBB XXXXXXA AAAAAAAAXXXBBBBBXXXX X BB CIMLE-----PGTRVSH--AAVRLAAQVGTLLVWVGEAG----V----RV my_fasta_file + ++ ++| ++ +++ + + ++++++++ ++ ++ TFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVT 2E1V_B BBBBBXXXXXXXXXXXXBBXXXXXXXXXXXXXXBBXXXXBBBBXBBBBBB phhchphchpchppphhcphcchhchhhhhpcppchpchhchhhhphphp 101- 150.....ddddd.......dd:.........:.........dddd.dddd.: 151- 200.........:.........:.........:.........:.........: hhppp hpphcpcchhhphchhhccchchchhcchhchchpch BBXXX XXXXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXX YASGQ--------PGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEP my_fasta_file + | ++ + ++ + ++| + |+ ++ +|+ + | LFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRP 2E1V_B BBXXXBBBBBBBBXXXXXXAAAAAAAAAAAAAAAAXXXXXAAAAAAXXXX hhhppphhhphpphhhhpchppchhhhchhpphhcppppccphhhpppch 151- 200.....dddddddd......:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhccphcphcphcppchchphhhhhcphphphppcch chcchcc AAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX XXXXXXX APARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRY-----DPKDWEK my_fasta_file +|+++++ + ++++ ++++++ ++ + + +|+ + + + +++ LYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAV 2E1V_B XXXXXXXXAAAAAAAAAAXXXXXAAAAXXXXXXXXXXXBBBBBBBBXAAA hhcchhchhhhcchhhcchchcphpcchhppphhphpcchchphhhpchh 201- 250.........:.........:.........:........ddddd......: 251- 300.........:.........:.........:.........:.........: pcphpphhphh pphhhphpchhhhhhphhhhhphhhppchhp XXAAAAAAAAA AAAAAAAAAAAAAAXXXXXXBBBBBXXXXXX GDTINQCISAA--------TSCLYGVTEAAILAAGYAPAIGFVHTGKPLS my_fasta_file + + +|+ ++ + ++ + |+ ++++ ++++++ INQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRR 2E1V_B AAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAXXXBBBBBBBBBXX hpphccchhhphhphchhpphphhhhhhhphhhcpcpcchphhphhhccc 251- 300.........:.dddddddd:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: hhhchhchhchcphhhchhchhccphpchccchchhhcchhcppcphhch AAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAA FVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKL my_fasta_file + + ++ + + + + + +++ |++ + + ++++++ ARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLT 2E1V_B XXXXXXXXXXXXXXXBBBBBBBBBXXXXXAAAAAAAAAAAAAAAAAAAAA hchchhhhphhhpphhpphhhhhcpphhhpccphhphhchhpcphhcphp 301- 350.........:.........:.........:.........:.........: 351- 400.........:.........:.........:.........:.........: hhh hcchh hhpchphhhhhcchphhh hhh AAA AAAAA AXXXXXXXXXXXXXXXXX XXX IPL-------IEDVL----------AAGEIQPPAPPEDAQPVA----IPL my_fasta_file + + | + ++++ +|+ ++++++ + ++| DYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKL 2E1V_B AAAXXXXXXXAAAAAXXXXBBBBBBXXXXXXXXXXXXXXXXXXBBBBXXX chccphhccchcphpchhpcphhpphphhppphchchhchchphpchcch 351- 400...ddddddd.....dddddddddd....:.........:...dddd..: 401- 445.........:.........:.........:.........:..... hhph pchphcp p XXXX XXXXXXX X PVSL------GDAGHRS----------------------S----- my_fasta_file ++++ + ++ + ETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGL 2E1V_B XXXXBBBBBBXXXXXXXBBBBBBBBAAAAAAAAAAAAAAXAAAAA cphphchpphhphpphccppcchchphhhphpphcchhhhhccph 401- 445....dddddd.......dddddddddddddddddddddd:ddddd The seq2struc alignment: my_fasta_file ---> 1VCV_B align_len=305 ene=-67.00 identity=6.229508 hpc_err=40.327868 size_err=0.000000 ins=79 del=0 begin1=0 begin2=0 1- 50.ii......:.....iiiii...iiii..:iiiiii...:ii.......: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | |++ |+ + +++ + + ++| ++ + ++ M--IHLVDYALLKPY-----LTV----DEA------VAGA--RKAEELGV 1VCV_B X XXXBBBBXXXXX XXA AAA AAAA AAAAAAXX h hhhhchhhhchh hph cch hhph cchcchph 1- 50.........:.........:.........:.........:.........: 51- 100.....ii..:.iiiii...:...iiiii.:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + + ++++ + ++++ + +|+|| AAYCV--NPIY-----APVVRPL-----LRKVKLCVVADFPFGA------ 1VCV_B XBBBB XXXX AAAAXXX XXXXBBBBBBXXXXXX hhhhh phhh hhhhchh hcchchhhhhchhhph 51- 100.........:.........:.........:.........:.........: 101- 150iiiiii..iii........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file |+ + ++ + |++++++ ++++ + |+ + +++++ + ------LP---TASRIALVSRLAEVADEIDVVAPIGLVKSRRWAEVRRDL 1VCV_B XX AAAAAAAAAAAXXXXXBBBBBXXAAAAAXXXAAAAAAAA hh phpchhhhpchhchhcchchhhhhphhcpcchhchccch 101- 150.........:.........:.........:.........:.........: 151- 200.....ii..:.........:....iiiiiiiiii.....:.......ii: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + ++ ++++ ++++ ++++++++ | + ISVVG--AAGGRVVKVITEEPYLR----------DEERYTLYDIIAE--A 1VCV_B AAAAA XXXXXBBBBBXXXXXXX AAAAAAAAAAAAA X hphhp hhppchhchhpcchhhc cccchphhchhhc h 151- 200.........:.........:.........:.........:.........: 201- 250...i.....:.........:.........:.......iiiiiii.....: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file + + ++ + |+ + +++ + + + | +||| +++ ++ GAH-FIKSSTGFAEEAYAARQGNPVHSTPERAAAIAR-------YIKEKG 1VCV_B XXX BBBXXXXXXXAAAAAAXXXXXXXXAAAAAAAAA AAAAAX phh hhcpppphhcchhhhcppphhhpphcchhhhhc hhcccp 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:...iiiiiiiiiii.....:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file |++ ++ + +++ +++|+| ++++++ + +++ + YRLGVKMAGGIRTREQAKAIVDA-----------IGWGEDPARVRLGTST 1VCV_B XXXBBBBBXXXXXAAAAAAAAAA AXXXXXXXXBBBBBXX hchphchhpphcpccphchhhch hphpcchhchchpppp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +++++ PEALL 1VCV_B XXXXX hchhh 301- 305..... The seq2struc alignment: my_fasta_file ---> 2GUP_A align_len=314 ene=-123.00 identity=5.732484 hpc_err=44.585988 size_err=0.000000 ins=25 del=9 begin1=0 begin2=0 1- 50iiiiiiiiiiiii..ii..:iii......:.........:.....iiii: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ | + +++++ | + ++ + + + ++ + -------------MT--IAT---IDIGGTGIKFASLTPDGKILDK----T 2GUP_A XX BBB BBBBXXBBBBBBBXXXXXBBBB B hp hhp hchpppphchhphphcpchhcc p 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhchppchphhhhchhh phpp hhhhh p chphchhhppphpph BBBBBXXXXXXAAAAAAAA AXXX BBBBB X XXXXBBBBXXXXXXX CIMLEPGTRVSHAAVRLAA--QVGT-LLVWV-G--EAGVRVYASGQPGGA my_fasta_file +|++++ + ++ | ++ |++ +| | + + | + + ++ SISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPY 2GUP_A BBXXXXXAAAAAAAAAAAAXXXXXXBBBBBBXXBBXXXXXXBBXXXXXXX phpphcphcchhhhhcpchpcpchpphhhphhphhppcpphhcphphhhh 51- 100.........:.........dd....d...:.d.dd....:.........: 101- 150.........:.........:.........:......iii:.........: cpcchhhphchhhccc hchchhcchhchchpchhhhccphcphcphc AAAAAAAAAAAAXXAA AAAAAAAAAAAAAAXXXAAAAAAAAAAAAAA RSDKLLYQAKLALDED---LRLKVVRKMFELRFGEPAPARRSVEQLRGIE my_fasta_file ++ ++ | |+++ ++ + +++ + +||+ +++ + ++ +++ IHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPE---LENAACVVIGT 2GUP_A XXXXXAAAAXXXXXXXBBBBBAAAAAAAAAAAAXXX XXXBBBBBBXX hhphphhchhpphphhhhhcpchphhphpchhhhhc hcphhhhhhpp 101- 150.........:......ddd:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: ppchchphhhhhcphphphppcchchcchccpcphpphhphhpphhhphp AAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAA GSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVT my_fasta_file |+ ++ + +++ + + | +++ +++ | + | ++ +++ GIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRY 2GUP_A XBBBBBBBXXBBBXXXXXXXXXXXXXXXXXXXXXXXXAAAAAXAAAAAAA phpphhhhppchhcpchphppchphhpphhhhcchpphpphhpppphhch 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: chhhhhhphhhhhphhhppchhphhhchhchhchcphhhchhchhccphp AAAAAAXXXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXX EAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPG my_fasta_file + ++++ + +++ + ++ + +|+++++ + |++++++ VIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDP 2GUP_A AAAAAXXXXXXAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAXX hhccpphpchcpcchhpchhhpphhhpchhcchpcphhpphhphphhhch 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: chccchchhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhh XXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXX EPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAI my_fasta_file + ++ + + +++ ++++ ++ + ++ + + + + ++ + GVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANL 2GUP_A XBBBBBXXXXXXAAAAAAAAAAAAAAAAAXXXXXXXXXBBBXXXXXXAAA phhphppphppphchhpphcchhcchhchhcchphhhhhphhphhhchph 251- 300.........:.........:.........:.........:.........: 301- 314.........:.... hhhhphpchphcpp XXXXXXXXXXXXXX PLPVSLGDAGHRSS my_fasta_file + +++++ + + YGALVNWLQEEKQW 2GUP_A AAAAAAAAAAXXXX hphhhphhpcccph 301- 314.........:.... The seq2struc alignment: my_fasta_file ---> 1WDM_B align_len=715 ene=119.00 identity=2.237762 hpc_err=19.580419 size_err=0.000000 ins=0 del=410 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhh phhhhccchphhhh phpph c XBBXXX XXXXXXXXXBBBBB XXXBB B -MTWLPL-NPIPLKDRVSMIFL------QYGQI----------------D my_fasta_file ++++ + | ++ + ++ ++ | MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKAD 1WDM_B XXBBXXXBBBBBXXXXBBBBBBXXXXXXXXXXXAAAAAAAAAAAAAAAAX hhhcpchhphphhcpphhchchchcpcphpchpchphpchcphhchhchc 1- 50d......d.:.........:..dddddd.:...dddddddddddddddd: 51- 100.........:.........:.........:.........:.........: hhcphhhhhc BXXXBBBBBB VIDGAFVLID---------------------------------------- my_fasta_file ++ + + ASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFE 1WDM_B XXXXBBBBBBXXXXXXXXXXAAAAAAAXXXXAAAAAAAAAAAAAAAAAAA hphcphhhpppcchhhhphchpchhcphchhchchhhpphchpchhpchc 51- 100.........:dddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: cpphcphhh h p ph hhh hhc hppchp XXXXBBBBB X X XX BBB BBB XXXXXX -KTGIRTHIP--V--G--------SV--ACI---MLE-------PGTRVS my_fasta_file + + + | ++ + ++ DLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFG 1WDM_B XXXXXBBBBBXXXBBXAAAAAAAAXXBBBBBXXXBBBXXXXXXXXXXXXX chphhphhhhpphhhppphchhhhhchchhhcphchphhchchphhhphp 101- 150d........:dd.dd.dddddddd..dd.:.ddd...ddddddd.....: 151- 200.........:.........:.........:.........:.........: hhhhchhhph pphhhhh pchphchh AAAAAAAAAX XXBBBBB XXXXXBBB HAAVRLAAQV--------GTLLVWV------GEAGVRVY----------- my_fasta_file ++ ++ + ++ + +++++ + |+++| GTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALD 1WDM_B AAAAAAAAAXAAAAAAAAXXXXBBBAAAAAAXXXXXBBBXXXXAAAAAAA pphchhchhphcphhchhhppccpchcchhchphhchhhphcchphhhhc 151- 200.........:dddddddd.:.....dddddd........ddddddddddd 201- 250.........:.........:.........:.........:.........: hppphpph cpcchhhphchhhccchc h BXXXXXXX AAAAAAAAAAAAXXAAAA A ------------------ASGQPGGA-RSDKLLYQAKLALDEDLR----L my_fasta_file ++ ++ + + ++++ ++ ++ LIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYP 1WDM_B AAAAAAXXXXXAAAAAXXXXXXXXXXAAAAAAAAAAAAAAAAAAAXXXXA hhcchhppchchchccphchcchchphhcphhhhcphcphhhpphphphh 201- 250dddddddddddddddddd.:......d..:.........:.....dddd: 251- 300.........:.........:.........:.........:.........: chhcchhchch pch hhhccp hcphcphcppchch AAAAAAAAAAA XXX AAAAAA AAAAAAAAAAAAAA KVVRKMFELRF--GEP-----------APARRS---VEQLRGIEGSRVRA my_fasta_file + | + + + ++ +++ + +|+| ++ + APVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQEL 1WDM_B AAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAA hhhchhcphpchhphpccchhchchhphhchhcpphpphhhphhhpcpch 251- 300.........:.dd...ddddddddddd..:...ddd...:.........: 301- 350.........:.........:.........:.........:.........: phhhhhcp hphp hp pcch chc AAAAAAAA XXXX XX XXXX XXX TYALLAKQ----YGVT----WN-------------GRRY----DPK---- my_fasta_file ++ + + +++ ++ | KKKAKVYDKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI 1WDM_B AAAAAAAAXXXXXXXXBBBBXXAAAAAAAAAAAAAXXXXBBBBXXXAAAA ccchchhcchhcchcphhhhphphhppphhhpphpcpphhhhcchpchph 301- 350........dddd....dddd..ddddddddddddd....dddd...dddd 351- 400.........:.........:.........:.........:.........: chccpc phpphhph XXXXXX AAAAAAAA ---------------DWEKGD--TINQCISA------------------- my_fasta_file |+ + + + EQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEA 1WDM_B AAAAAAAAAAAAAAAXXXXXXAAAAAAAAAABBBBXXXXXXXXXXBBBBX cpphhchhchhhpchccpchphhchhchhpphchphphpchpphchhhch 351- 400ddddddddddddddd....:.dd......:.ddddddddddddddddddd 401- 450.........:.........:.........:.........:.........: hpphhhphpch hhhh AAAAAAAAAAA AAAA ----ATSCLYGVTEA------------------AILA------------- my_fasta_file +++ + +| +| VVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGM 1WDM_B XXXXAAAAAAAAAAAXXXXXXXXBBBBXXXXXXAAAAXXXXXXXXXBBBB hhcphchcphhhhchcphhccchhhhppppphphphhhchhcchcphhph 401- 450dddd.....:.....dddddddddddddddddd....ddddddddddddd 451- 500.........:.........:.........:.........:.........: hph hhh hphhh XXX XXX BBBBB ------------------AGY-------------APA-IGFVH------- my_fasta_file + + ++ + |+ HFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLV 1WDM_B BBXXXXXXXXBBBBBBXXXXXAAAAAAAAAAAAAXXXBBBBBBXXXXXXA hhhphhhhhhhhchhcpccppchhhhpphhhhcchpcphhhhpchhphhh 451- 500dddddddddddddddddd.:.ddddddddddddd...d.:...ddddddd 501- 550.........:.........:.........:.........:.........: ppchh p XXXXX X -------------------------------TGKPL--------S----- my_fasta_file ++ + NRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGH 1WDM_B AAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAXXXXXAAAAAAAAXAAAAA pchhhhhhpphhchhphphchhchcchhcchphhhphhhhhchhphcpph 501- 550ddddddddddddddddddddddddddddddd.....dddddddd.ddddd 551- 600.........:.........:.........:.........:.........: hhhch hchh chcphhhc AAAAA AAAA XAAAAAAA ----FVYDI-ADII-----KFDTVVPK----------------------- my_fasta_file + |+ + HGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQ 1WDM_B AAAAAAAAAXAAAAXXXXXXAAAAAAAXXXXXXXXXXXXXBBXXXXBBXX hpcchhhcphhcchcccccphhchhhchcchppcppcphhhhchcccpcp 551- 600dddd.....d....ddddd:.......ddddddddddddddddddddddd 601- 650.........:.........:.........:.........:.........: hhchhc cphpchc cchchhhcchhcppcphh chhhh AAAAAA XXXXXXX AAAAAAAAAAAAAAAAAA AAAAA -AFEIAR----RNPGEPD---REVRLACRDIFRSSKTLA------KLIPL my_fasta_file + +++ + |++ + + + + +++++++ ++ KKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVET 1WDM_B XAAAAAAXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAXXXXXXAAAAA cchhcpphhchhchhhhcpcchpccchhphhhhhhhhcphchhccphhcp 601- 650d......dddd.......ddd........:.........dddddd....: 651- 700.........:.........:.........:.........:.........: hcchhh hpchphhh h hcchphhhhhh AAAAAA XXXXXXXX X XXXXXXXXXXX IEDVLA-AGEIQPPA--------P----------PEDAQPVAIPL----- my_fasta_file + + +++++ +++| + + AAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAELGALYHPT 1WDM_B AAAAAAXXXXXXXXXAAAAAAAAXAAAAAAAAAAXXXXXXXXXXXAAAAA hhchchphhhphphhhhcpphhchhcphphhchhhhhcphhchphhhhhp 651- 700......d..:.....dddddddd.dddddddddd.....:.....ddddd 701- 715.........:..... hhphpchphcpp XXXXXXXXXXXX ---PVSLGDAGHRSS my_fasta_file +++ + +++ AKLREMAKNGQSFFG 1WDM_B AAAXXXXXXXXXXXX hchcchhcpppphhp 701- 715ddd......:..... The seq2struc alignment: my_fasta_file ---> 2F7L_A align_len=455 ene=-82.00 identity=4.395605 hpc_err=34.285715 size_err=0.000000 ins=0 del=150 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphh hhccch phhhhphpphchhcphhhhhccpphc XBBXXXXXX XXXXXX BBBBBXXXBBBBXXXBBBBBBXXXXB MTWLPLNPI----PLKDRV----SMIFLQYGQIDVIDGAFVLIDKTGIR- my_fasta_file | +| + ++ +| ++ ++ +++ | +++ + + + MGKLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGG 2F7L_A XXXXXXXXXBBBBXXXXXXAAAAAAAAAAAAAAAXXXXBBBBBBXXXXXA hpchhppcphcphhpcchphchhhchpchhpphhpcppchhhpcchchpp 1- 50.........dddd......dddd......:.........:.........d 51- 100.........:.........:.........:.........:.........: phhhhpphhhhhhchppchphhhhchhhphpphhhhh pch BBBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBB XXX -------THIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWV---GEA my_fasta_file ++ ++ + + ++++++ + + +++++ ++| + DMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNP 2F7L_A AAAAAAAAAAAAAXXXBBBBBBBXXAAAAAAAAAAAXXXBBBBBXXXXXX chhhchhcpphhphphchhcpphhhphhhphhhcphphcpphhhphphph 51- 100ddddddd..:.........:.........:.........:....ddd..: 101- 150.........:.........:.........:.........:.........: ph chhh ppphpph cpcchhhphchh hccc hch XX BBBB XXXXXXX AAAAAAAAAAAA XXAA AAA GV---RVYA-SGQPGGA-RSDKLLYQAKLA-----------LDED--LRL my_fasta_file + ++ ++ + + + + + |+ + + APYNGIKVVDKDGIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKREDR 2F7L_A XXBBBBBBBXXXXXXXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXBBXXX hhhpphchhcccphchcccccpchcchhhpcchpphchpphppchccccc 101- 150..ddd....d.......d.:.........:ddddddddddd....dd..: 151- 200.........:.........:.........:.........:.........: chhcchhchchpchhhhccph cphcphcppchchphhhhh AAAAAAAAAAAXXXAAAAAAA AAAAAAAAAAAAAAAAAAA KVVRKMFELRFGEPAPARRSV-------EQLRGIEGSRVRATYALLA--- my_fasta_file + + + + +++++ +++ + +++ ++++| + ++||+ VISTYVNGILSHVDIEKIKKKNYKVLIDPANSVGALSTPLVARALGCKIY 2F7L_A AAAAAAAAAAXXXXAAAAAAAXXBBBBBXXXXXXXXXAAAAAAAXXXBBB hhpphhpphhphhchcchcccphchhhchhpphphhpphhhhchhphchh 151- 200.........:.........:.ddddddd.:.........:.......ddd 201- 250.........:.........:.........:.........:.........: cphphphppcchchcchccpcphpphhphh AAXXXXXXXXXXXXXXXXXXXAAAAAAAAA -KQYGVTWNGRRYDPKDWEKGDTINQCISAA------------------- my_fasta_file + + ++ ++ | +++ + + ++ +++ TINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDADRAIFI 2F7L_A BXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAXXXXBBBBXXXXXXXXBBB phppphchhhphcphchphcphccphchhcphchchphhhcpchcchhhh 201- 250d........:.........:.........:.ddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: pphhhphpchhhhh hphhhhhphhhppchhphhhchh c AAAAAAAAAAAAAA XXXXXXBBBBBXXXXXXAAAAAA A --------TSCLYGVTEAAILA-AGYAPAIGFVHTGKPLSFVYDIA---D my_fasta_file +++ + + +++| +++ + + +++ +++ + + DSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKYNI 2F7L_A BXXXXXXXAAAAAAAAAAAAAAXXXXXXXBBBBBXXXXXAAAAAAAXXXX cpcpchphpccppphhphhhphcphchhcchhphhpppphhcchhpchph 251- 300dddddddd.:.........:..d......:.........:......ddd: 301- 350.........:.........:.........:.........:.........: hhchcphhhchhchhcc ph pchccchchhhcchhcpp AAXAAAAAAAAAAAAAX XX XXXXAAAAAAAAAAAAAA -----IIKFDTVVPKAFEIARR----NP----GEPDREVRLACRDIFRSS my_fasta_file + ++ | ++++ + ++|+ +||++ + +++ QVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALML 2F7L_A BBBBBXXXAAAAAAAAAAXXXXBBBBXXBBBBXXXXXXXXXAAAAAAAAA phchpchpphchhhchhccphhhphccppphhhhhhphhccphhphhhhh 301- 350ddddd....:.........:..dddd..dddd.......:.........: 351- 400.........:.........:.........:.........:.........: cphhchhhhhcchhhhpchp hhhhhc chph AAAAAAAAAAAAAAAXXXXX XXXXXX XXXX KTLAKLIPLIEDVLAAGEIQ--------PPAPPE------------DAQP my_fasta_file +|| ++ +++ ++++++ + + + + + ELLANENVSSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSS 2F7L_A AAAAAAXXXAAAAAAXXXXXBBBBBBBBXXXXXXAAAAAAAAAAAAXXXX chhhpcphpphchhcchhchhhhcpchchchphhhcchhcchhchhpppp 351- 400.........:.........:dddddddd.:....dddddddddddd...: 401- 450.........:.........:.........:.........:.........: h hhhh hh phpch ph X XXXX XX XXXXX XX V---AIPL-----PV-------SLGDA--------GH------------- my_fasta_file | +|++ ++ |+ + VKAITIDGVKIIGKDFWFLVRKSGTEPIIRIMAEAKDENVANNLVNELKK 2F7L_A XBBBXXXXBBBBBXXBBBBBBBXXXXXBBBBBBBBXXAAAAAAAAAAAAA hchhphcphchhpcchhhhhccpppchhhchhhchcccphhpphhpchcc 401- 450.ddd....ddddd..ddddddd.....dddddddd..ddddddddddddd 451- 455..... cpp XXX --RSS my_fasta_file IVEGK 2F7L_A AAXXX hhcpc 451- 455dd... The seq2struc alignment: my_fasta_file ---> 1CI9_B align_len=385 ene=-101.00 identity=8.051948 hpc_err=33.766234 size_err=0.000000 ins=8 del=80 begin1=0 begin2=0 1- 50.........:.........:.........:.........:........ii h phhhhphhhhccchphhhhphpphchhcphhhhhccpphcp X BBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBB M--------TWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRT my_fasta_file + +++ +++ ++++ +++ ++ |++| | ++ AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAG-- 1CI9_B XAAAAAAAAAAAAAAAAXXXXXBBBBBBBBXXBBBBBBBBBBBBXXXX hhphhhchchhhcphhcccchhphhhhhhchpchhhcchpphhccchp 1- 50.dddddddd:.........:.........:.........:.........: 51- 100i........:.........:.........:.........:.........: hhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphp BBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXX HIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPG my_fasta_file +| ++ +|+++| + | +|+ + +| +++ ++ ++ +++ -RPMREDTLFRLASVTKPIVALAVLRLVARGELALDAPVTRWLPEFRPRL 1CI9_B BBXXXXXBBBXXXXAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXX chhcccphhchhphpchhhhhhhhchhhcpchhhchhhpchhhchchch 51- 100.........:.........:.........:.........:.........: 101- 150.........:......iiiii........:.........:.........: phcpcchhhphchhhccchchchhcchhchchpchhhhccphcphcphcp XXAAAAAAAAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAA GARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEG my_fasta_file ++ | +| ++ +| ++ +++ +| ++ + +|+ ++ ADGSEPLVTIHHLLTH-----TSGLGYWLLEGAGSVYDRLGISDGIDLRD 1CI9_B XXXXXXXXXAAAAAXX XXXXXXXXXXXXXXAAAAAXXXXXXXXXX hcppchhhphhhhhph ppphphhhhcphpphhcchphpcphchcc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: pchchphhhhhcphphphppcchchcchccpcphpphhph hpphhhp AAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA AAAAAAA SRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISA---ATSCLYG my_fasta_file + + ++|| + +++ +| + + ++ ++++++ ++ ++ FDLDENLRRLASAPLSFAPGSGWQYSLALDVLGAVVERATGQPLAAAVDA 1CI9_B XXAAAAAAAAAXXXXXXXXXXXXXXXXAAAAAAAAAAAAAXXXAAAAAAA hchccphcchhphhhphhhppphphphhhchhphhhcchppphhhhhhch 151- 200.........:.........:.........:.........:ddd......: 201- 250.........:.........:.........:.........:.........: h pchh hhhhphhhhhphhhppchhp hhhc hhchhch A AAAA AAAXXXXXXBBBBBXXXXXX AAAA AAAAAXA V-TEAA------ILAAGYAPAIGFVHTGKPLS--FVYD----IADIIKF- my_fasta_file + +| ++ + | | |++ ++ + LVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHGAA 1CI9_B AXAAAAXXXXBBXXXXXXXXXXXXBBXXXXXXBBXXXXBBBBXXXXXXXB hhhphhphcchphhphchcchhhhhhcpphchhchccphchhhhcphphh 201- 250.d....dddddd.......:.........:..dd....dddd.......d 251- 300.........:.........:.........:.........:.........: cphhhchhchhccphpch ccchchhhcchhcp pcphhchh AAAAAAAAAAAAXXXXXX XAAAAAAAAAAAAA AAAAAAAA ---DTVVPKAFEIARRNPGEP--DREVRLACRDIFRS-----SKTLAKLI my_fasta_file ++++ ++ + ++ + ++|+ + |+ + ||| VRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAA 1CI9_B BBBXXXXXXXXXXXXXXXXXXBBBAAAAAAAAAAAAAXXXXXXAAAAAAA hchhhpchhchphhhppphphhpphcchhchhchhchphphhhcphhchh 251- 300ddd......:.........:.dd......:.......ddddd.......: 301- 350.........:.........:.........:.........:.........: hhhcchhhhpchphh hhhc ch phhhhhhh hph AAAAAAAAXXXXXXX XXXX XX XXXXXXXX XXX PLIEDVLAAGEIQPP---APPE---DA----QPVAIPLP-----VSL--- my_fasta_file +++ ++ +| + |+ + |+ + + ++ |++ RRDQAGVGAETRGPGWGFGYLSAVLDDPAAAGTPQHAGTLQWGGVYGHSW 1CI9_B AXXXXXXXXXXXXXXBBBXXXXBBBXXAAAAXXXXXXXXBBBBBXXXBBB cccphphphcpcphphphphhphhhcchhhhpphphhpphphpphhphph 301- 350.........:.....ddd.:..ddd..dddd........ddddd...ddd 351- 385.........:.........:.........:..... pchp h c p p XXXX X X X X ---GDAG-------H--R----S-----------S my_fasta_file + | + + + FVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA 1CI9_B BBBXXXXBBBBBBBXBBXAAAAXAAAAAAAAAAAX hhcchhphphhhhppphhcphpphhphhhcchhhh 351- 385ddd....ddddddd.dd.dddd.ddddddddddd. The seq2struc alignment: my_fasta_file ---> 1S6Y_A align_len=439 ene=-92.00 identity=5.011389 hpc_err=33.485195 size_err=0.000000 ins=0 del=134 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhhhphh hhccch phhhhphpph X BBXXXXXX XXXXXX BBBBBXXXBB M----TWLPLNPI----------PLKDRV--SMIFLQYGQI--------- my_fasta_file + | +++ + + + + + + RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA 1S6Y_A XBBBBBBXXXXXXAAAAAAAAAAXXXXXXBBBBBBBXXXXXAAAAAAAAA chchhphppppphphchhcphhcchhchhhpchhhhchhcpccchchhph 1- 50.dddd....:...dddddddddd......dd........:.ddddddddd 51- 100.........:.........:.........:.........:.........: chhcphhhhh c cpphcphh hhp ph BBXXXBBBBB B XXXXBBBB BXX XX --------DVIDGAFVLI-D-----KTGIRTHI--PVG----------SV my_fasta_file ++ +++ |+ | ++++++ +|| + LAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIP 1S6Y_A AAAAAAAAXXXXXBBBBBXXAAAAAXXXXBBBBXXXXXAAAAAAAAAAXX hhcchhcchphhhchhhphcccchhcphchhppphchpphchchcccchh 51- 100dddddddd.:........d:ddddd....:...dd...dddddddddd.: 101- 150.........:.........:.........:.........:.........: hhhhhchppchp hhhhchhhp hpphhhh hp BBBBBBXXXXXX AAAAAAAAA XXXBBBB BX ACIMLEPGTRVS---------------HAAVRLAAQ-VGTLLVW--VG-- my_fasta_file + + ++ + + + +++ + | + ++ LKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG 1S6Y_A XXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAXXXXBBBBXXXXAA hchphhppcppphpphhcphcphhhhhchhcchcchhhchhhhphpphhp 101- 150.........:..ddddddddddddddd..:......d..:....dd..dd 151- 200.........:.........:.........:.........:.........: chphchhhppphpphcpcchhhph ch XXXXBBBBXXXXXXXAAAAAAAAA AA ---------EAGVRVYASGQPGGARSDKLLYQA--------------KL- my_fasta_file + + | +++ ++++ + ++ MVTEAVLRYTKQEKVVGLCNVPIGMRMGVAKLLGVDADRVHIDFAGLNHM 1S6Y_A AAAAAAAAAXXXXXBBBXXXAAAAAAAAAAAAAXXXXXXBBBBBBBBXXB hhpchhhchpcpcchhphhphhhphchphhchhphchcchhhchhphphh 151- 200ddddddddd:.........:.........:...dddddddddddddd..d 201- 250.........:.........:.........:.........:.........: hh ccchchchh cchhchc hpchhhhccph AX XAAAAAAAA AAAAAAA AXXXAAAAAAA --------AL--DEDLRLKVV-------RKMFELR----FGEPAPARRSV my_fasta_file ++ + ++ | + |+ + ++ +++ + VFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKVL 1S6Y_A BBBBBBBBXXBBXAAAAAAAAXXXXXXXAAAAAAAXXXXXXXXAAAAXAA hhphhhhhcphchpcchhchhhhhccpphphcphhchphchchhcphchh 201- 250dddddddd.:dd.......:.ddddddd.:.....dddd:.........: 251- 300.........:.........:.........:.........:.........: cphcphcppchchphhhhhcphphphppcchchcchccpcphpphhphhp AAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAA EQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAAT my_fasta_file ++ ++++++ + ++ |++ + + + + ++ ++ ++ + + |+ PCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAI 1S6Y_A AAAAAAAAAAAXXXXAAAAAAAAAAAAAXXXXXXXXXXXAAAAAAAAAAA hhhhhchhhppcchhhcchchhcpcppchchhpphccchhchhcchphhh 251- 300.........:.........:.........:.........:.........: 301- 350.........:.........:.........:.........:.........: phhhphp chhhhhhphhhh hphhhpp chhphhhch AAAAAAA AAAAAAXXXXXX BBBBBXX XXXXAAAAA SCLYGVT-------EAAILAAGYAPA----IGFVHTG----KPLSFVYDI my_fasta_file +++ || + + + | |+| + +++ + KPPQLEKRGGAYYSDAACSLISSIYNDKRDIQPVNTRNNGAIASISAESA 1S6Y_A AAAXXXXBBBBBBBXXXXXXXXXXXXBBBBBBBBBXXBBBBXXXXXXXAA chhphcccpphhhpchhhphhpphhpcccchphhppcppphhhphphcph 301- 350.......ddddddd.....:......dddd.......dddd........: 351- 400.........:.........:.........:.........:.........: hchhchcphhhchhchhccphpchccchchhhcchhcppcphhchhhhhc AAAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAA ADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIE my_fasta_file ++ +|+++++ + +|++ +| + + ++++++ + ++ +++ VEVNCVITKDGPKPIAVGDLPVAVRGLVQQIKSFERVAAEAAVTGDYQTA 1S6Y_A AAAAAAAAAAAAAAAAAAAAAXXAAAAAAAAAAXXXXXXAAAAAAAAAAA hchphhhpccphchhhhpchhhhhcphhpphcphcchhhchhhppchpph 351- 400.........:.........:.........:.........:.........: 401- 439.........:.........:.........:......... chhhhpchphhhhhcc hphhhhhhhhphpchphcpp AAAAXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX DVLAAGEIQPPAPPED---AQPVAIPLPVSLGDAGHRSS my_fasta_file +| ++ + |+++++ + + +++|+ ++ + LVAMTINPLVPSDTIAKQILDEMLEAHKEYLPQFFKQAK 1S6Y_A AAAXXXXXXXXXXXXXAAAAAAAAAAAAAXXAAAAAAAA hhhhphphhhhpcphhcphhcchhchhcchhhphhcphc 401- 439.........:......ddd:.........:......... The seq2struc alignment: my_fasta_file ---> 1MHM_A align_len=305 ene=-53.00 identity=6.557377 hpc_err=40.327868 size_err=0.000000 ins=41 del=0 begin1=0 begin2=0 1- 50...iiiiiiii....i...:...ii....:.........:.........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++ ++ +| ++ ++ + +++ + + + +++ SLF--------VYSY-KIIIKTC--GTTKLLLAIPPILRLAETLSLKVQD 1MHM_A XBB BBXX BBBBXXX XXXXXXXXAAAAAAAAAAXXXXXXB phh hhph chhhcph pppchhhhhhhhhchhcphphchpc 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...iiiii.:.........:....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + + ++ ++|+++ ++ +|+ +| + +|+ VRYTRGSFIFPGAQSFPHRHFSE-----EVAVLDGYFGKLAAGS------ 1MHM_A BBBBBXXXXAAAAAAAAAAAAXX XXXXBBBBBBXXXXXX hchpcpphhhhphpphhhchhpc chhhhcphhpchhhpp 51- 100.........:.........:.........:.........:.........: 101- 150iii......:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file | + + ++++ | +++ ++ ++++ |+ + +++ ---KAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASV 1MHM_A XXBBBBBBBXXXXXXXXXXXBBBBBBBBBXAAAAAXXXXXXXXXAAA chhhhpphccppchhhhphphpphpppchhhphchhhpphcccchph 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:....iiiii:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file + + ++ ++ ++ ++ ++++ + ++ ++ ++ ++ +| FYKTEESSAAHMTVRSGIRKILPK-----SEICDFEFEPCGYSMNSIEGA 1MHM_A AAAAAXXXXXXXXXBBBBBBXXXX XBBBBBBBXXBBBBBBBBXXX hhcpccpphhhhphcpphcchhhc pchhchchchhphphpphcph 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iiiiiii........:.........:....iiii.: hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file | +++ ++ + | |+ + ++ + +|++ || AVSTIHITPEDGFT-------YASFESVGYNPKTMELGPLVERV----LA 1MHM_A XXXBBBBBBBXXXX XXXXAAAAAAAAAAAAXBBBBBB BB hhpphhhphccphp hhphcphphphcphchphhhcch hh 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file |+ +|++| ++ ++++++ +++++ + + |++ ++++| +++ CFEPAEFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQ 1MHM_A BBXXXAAAAAAAAXXXXXXBBBBBBBBBBXXXXXBBBBBBBBBXXXXXXX hhchhchphhhhhchhpchhcchhphchcphphhchphcchpcppphhhp 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file KFTRT 1MHM_A XXXXX chpcp 301- 305..... The seq2struc alignment: my_fasta_file ---> 2HI4_A align_len=480 ene=-70.00 identity=4.375000 hpc_err=29.166666 size_err=0.000000 ins=0 del=175 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhccchphh hhp hp phchhcph XBBXXXXXXXXXXXXBBB BBX XX BBBBXXXB --MTWLPLNPIPLKDRVSMI----FLQ------------YG-QIDVIDGA my_fasta_file +|+++|+| ++ ++ ++ + ++++| + RVPKGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGST 2HI4_A XXXXXXXXXXXXXXXXXXXXAAAAXXXAAAAAAAAAAAAXXBBBBBBXXB chhcphcphhchhphhhhphhhphpcphhhhhpchppchpchhphchppp 1- 50dd.......:.........:dddd...dddddddddddd:.d.......: 51- 100.........:.........:.........:.........:.........: hhhhc cpphcphhhh pphhhhhhchppchp BBBBB XXXXBBBBBX XXXBBBBBBXXXXXX FVLID-------------KTGIRTHIPV----GSVACIMLEPGTRVS--- my_fasta_file || + + + +++++++| | + PVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVW 2HI4_A BBBBBXXAAAAAAAAXXXXXXXXXXXXXAAAAXXXXXXXXXXXXXXXAAA hhhhhpchcphcphhhcppcchcpchchhppphhpcppphphppcpphhh 51- 100.....ddddddddddddd.:........dddd.......:.......ddd 101- 150.........:.........:.........:.........:.........: hhhhchhhphpphhhhhpchph chhhppp AAAAAAAAAXXXBBBBBXXXXX BBBBXXX ----HAAVRLAAQVGTLLVWVGEAGV-----------------RVYASGQ my_fasta_file + |+ + + ++ + + +|+ AARRRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGP 2HI4_A AAAAAAAAAAAAAXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAXX hhccchhpphhpphphhpchhpppphhhcchhpcchchhhpchpchhhph 101- 150dddd.....:.........:......ddddddddddddddddd......: 151- 200.........:.........:.........:.........:.........: hpphcpcchhhphchhhccchc hchhcch hchc XXXXAAAAAAAAAAAAXXAAAA AAAAAAA AAAA PGGARSDKLLYQAKLALDEDLR--------LKVVRKM---FELR------ my_fasta_file ++++++ ++ ++ + + + | + GHFDPYNQVVVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSG 2HI4_A XXXXAAAAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAXXXAAAAXXXXXX phhchhpphhhphhphhphhhhpphhhcppcchhphhcpphchhcphppp 151- 200.........:.........:..dddddddd.......ddd....dddddd 201- 250.........:.........:.........:.........:.........: hpchhhhccphcphcphcppchchphhhhhcphphphppcc AXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX --------FGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRR- my_fasta_file + + ++ ++ + + +++ ++ + ++ +|+++ + +| NPLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDKNSVRDI 2HI4_A XXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXA phhchhhhhchhhphhhpchchhppchhhhhpcphpchhpchccpphcch 201- 250dddddddd.:.........:.........:.........:.........d 251- 300.........:.........:.........:.........:.........: hc hc chc c pcphpphhphhpphhhphpchhh XX XX XXX X XXAAAAAAAAAAAAAAAAAAAAA ----------YD--PK--DWE----K-GDTINQCISAATSCLYGVTEAAI my_fasta_file ++ + + + |+ +++++ + + TGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYL 2HI4_A AAAAAAAAAAXXBBXXBBXXXAAAAXAAAAAAAAAAAAAAAAAAAAAAAA pphhhchpccphchppphhhpcchhphhpchhphphcphpphhphphhhh 251- 300dddddddddd..dd..dd.:.dddd.d..:.........:.........: 301- 350.........:.........:.........:.........:.........: hhh phhhhhphhhppchhphhhchhchhchcph AAX XXXXXBBBBBXXXXXXAAAAAAAAAXAAAA LAA-------------GYAPAIGFVHTGKPLSFVYDIADIIKFDTV---- my_fasta_file ++ + ++++ + |++ + + | ++ VTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLP 2HI4_A AAXAAAAAAAAAAAAAAXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXXXX hpchchpcchpcchcphhpcccchchpcchphhhhchhhhcphchpphhh 301- 350...ddddddddddddd...:.........:.........:......dddd 351- 400.........:.........:.........:.........:.........: hhchhc hh AAAAAA AA ---------------------------VPKAFE---------------IA my_fasta_file + ++ FTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFL 2HI4_A XXXXBBXXXXBBBXXBBBXXXXBBBBXAAAAAAXXXXXXXXXXXXXXXXX hphhhpppccpphpphhhhcchhhhhpphphphchchhcchpchchcchh 351- 400ddddddddddddddddddddddddddd..:...ddddddddddddddd.: 401- 450.........:.........:.........:.........:.........: ccphpchccchc hhhcchhcppcphhchhhhhcchhhh p AXXXXXXXAAAA AAAAAAAAAAAAAAAAAAAAAAAAAX X RRNPGEPDREVR--------LACRDIFRSSKTLAKLIPLIEDVLAA---G my_fasta_file + + + + +++|+|+ +++ ++ | ++ ++ + TADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSV 2HI4_A XXXXXXXXAAAAXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAXBBBX phcpphhpchhpcchhhhphpccchhpchhhchchhhhhhhhhpphchph 401- 450.........:..dddddddd.........:.........:......ddd: 451- 480.........:.........:.........: chphhhhhcchphhhhhhhhphpchphcpp XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EIQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file + + + + ++ + + ++++++++|+| PPGVKVDLTPIYGLTMKHARCEHVQARRFS 2HI4_A XXXXXXXXXXXXXXXXXXXXXXXXBBBXXX hhphchchphhhphphchhchchhphcchp 451- 480.........:.........:.........: The seq2struc alignment: my_fasta_file ---> 2IEE_A align_len=307 ene=-75.00 identity=5.863192 hpc_err=43.648207 size_err=0.000000 ins=56 del=2 begin1=0 begin2=0 1- 50iiiii....:.....iii.:iii......:iiiiii...:i........i hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file + ++ || + + + +++ ++++ ++ |+ -----TGWEQIKDKG---KI---VVATSGT------LYPT-SYHDTDSG- 2IEE_A XXAAAAAAAX BB BBBBXXX XXXX XBBBXXXX pphcphcccp ch hhhpppp hhhp phhcpcpp 1- 50.........:.........:.........:.........:.........: 51- 100.....ii..:.........:...iii..iiiii....ii:....iiiii: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++| ++++ + |+ |+ +| ++ +++ + SDKLT--GYEVEVVREAAKRLGL---KV-----EFKE--MGIDG-----M 2IEE_A XXBBB XAAAAAAAAAAAAXXX BB BBBB XXXXX A pcchp phchchhcchhcchph ch chcc hphcp h 51- 100.........:.........:.........:.........:.........: 101- 150........i:.........:.......iiii........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file |++++ +++ ++++ + +|+ +++ + +++| + ++ ++ LTAVNSGQ-VDAAANDIDVTKDREEKF----AFSTPYKYSYGTAIVRKDD 2IEE_A AAAAAAXX XXBBXXXXXXXAAAAXXB BBXXXXBBBBBBBBBXXXX hphhpppp hchhhpchchpcccccch hhpphhchphpphhhcccc 101- 150.........:.........:.........:.........:.........: 151- 200.........:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhph hpphhhphpchhhhhh AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAA AAAAAAAAAAAAAAAX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISA--ATSCLYGVTEAAILAA my_fasta_file |+++ +++ | +++++ +++ + + | ++++ + ++ | LSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVA 2IEE_A XXXXXXXXXXXXXBBBXXXXXAAAAAAAAXXXBBXXXXXXXAAAAAAAAA hpphcphcchcpcchhphhpphhhchhcchphcchhhcphppcphhcchh 151- 200.........:.........:.........:..dd.....:.........: 201- 250.........:iiiii....:.........:.........:.........: phhhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchc XXXXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAA GYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVR my_fasta_file ++++ + ++ + + |+ + |++ ++ |+++++ ++++ NGRTDVILND-----YYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKK 2IEE_A AXXXXBBBBB AAAAAAAAAAXXXXXXBBXXXXXBBBBBBXXBBBX ppcpchhhpc hhhpphhhhhhhchphphhhchchhhpcphhhhcc 201- 250.........:.........:.........:.........:.........: 251- 300.........:.........:.....iiiiiiiiii....:.........: hhhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphp AAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXX LACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLG my_fasta_file ++ ++++ + +|+ ++++ +++ ++ ++ + ++ SNAALQKKMNEALKEMSKDGSLTKL----------SKQFFNKADVSKKID 2IEE_A XXAAAAAAAAAAAAAAAAAXAAAAA AAAAXXXXXXXXXXX pphhhpcchpchhcchpccpphpch pcphhpchchpcchc 251- 300.........:.........:.........:.........:.........: 301- 307....... chphcpp XXXXXXX DAGHRSS my_fasta_file ++++ + ADVQDVD 2IEE_A XXXXXXX hchpchc 301- 307....... The seq2struc alignment: my_fasta_file ---> 3BUJ_A align_len=397 ene=-116.00 identity=6.297229 hpc_err=41.813603 size_err=0.000000 ins=0 del=92 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhph hh hccchphhhhphpphchh cp XBBXXXXX XX XXXXXBBBBBXXXBBBBX XX MTWLPLNP-----IP-------LKDRVSMIFLQYGQIDVI--------DG my_fasta_file | + + +| | + + ++ ++++ +++ VTAFDPTDADVRRDPYPSYHWLLRHDPVHRGAHRVWYVSRFADVRAVLGD 3BUJ_A XXXXXXXXAAAAAXXAAAAAAAAAAXXBBBXXXXXBBBXXAAAAAAAAXX hphhchpchchccchhhphhhhhchchhhcphhchhhhpchhchchhhpc 1- 50........ddddd..ddddddd.......:.........:dddddddd.: 51- 100.........:.........:.........:.........:.........: hhhhh ccpphcphhhhpphhhhhhchppchphhhhchhhp hpphh BBBBB BXXXXBBBBBXXXXBBBBBBXXXXXXAAAAAAAAA XXXBB AFVLI----DKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQ-VGTLL my_fasta_file ++ + ++ ++++ + +++ ++ + + +++ +++++ + +++ ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPDHGRLRGVVGPAFSP 3BUJ_A XXBBXAAAAAAAAAAAXXXAAAAAAXXXXXXXXXXAAAAAAAAAXXXXXX cchhcpphcchhpchhphphhhchhpchhhhpcchchpchcphhphhhph 51- 100.....dddd:.........:.........:.........:....d....: 101- 150.........:.........:.........:.........:.........: hhhpch phchhhppphpphcpcchhhphch h BBBXXX XXBBBBXXXXXXXAAAAAAAAAAA A VWVGEA----------------GVRVYASGQPGGARSDKLLYQAKL---A my_fasta_file + ++ +++ +++ +++++ +++| | SALRRLEPVIAGTVDDLLRPALARGAMDVVDELAYPLALRAVLGLLGLPA 3BUJ_A XXXXXXAAAAAAAAAAAAAAAAXXXBBBAAAAXAAAAAAAAAAAAAXXXX phhcchchhhhpphcchhchhhhcphhchhcchhhhhhhchhhphhphhh 101- 150......dddddddddddddddd.......:.........:......ddd: 151- 200.........:.........:.........:.........:.........: hccchchchhcchh chchpchhhhccphcphcphcppchchphhhhhcp XXAAAAAAAAAAAA AAAAXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA LDEDLRLKVVRKMF-ELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQ my_fasta_file |+ ++ +| + | +|++|+++| +++ +++++ +| ++ |+++ ADWGAVGRWSRDVGRTLDRGASAEDMRRGHAAIAEFADYVERALARRRRE 3BUJ_A XXAAAAAAAAAAAAXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAA hchphhpchpcchpcphccphphcchccphhhhhchhchhcchhhccccc 151- 200.........:....d....:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hphp hppcc hchcchccpcphpphhphhpphh XXXX XXXXX XXXXXXXXXXAAAAAAAAAAAAA YGVT----------WNGRR--------YDPKDWEKGDTINQCISAATSCL my_fasta_file +|+ + ++ +++ + + | + | +| | GGEDLLALMLDAHDRGLMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLL 3BUJ_A XXXXAAAAAAAAAAXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ppcchhhhhhchhccphhpcpchhpphhphhhpphcphhpphpphhhphh 201- 250....dddddddddd.....dddddddd..:.........:.........: 251- 300.........:.........:.........:.........:.........: h phpchhhhh h phhhh hphhhppc hh ph A AAAAAAAAA X XXXXX BBBBBXXX XX XA Y-GVTEAAILA---A-----------GYAPA-IGFVHTGK---PL---SF my_fasta_file ++ ++ ++ + + + ++ + ++ + AHPDQLDLLRRRPDLLAQAVEECLRYDPSVQSNTRQLDVDVELRGRRLRR 3BUJ_A AXAAAAAAAAAXXXXAAAAAAAAAAAXXXXXBBBBBBXXXBBBXXBBBXX hhhcphchhccchchhhphhcchhchchphppppcphchchchcpcchcc 251- 300.d.......:.ddd.ddddddddddd...:.d.......:ddd..ddd.: 301- 350.........:.........:.........:.........:.........: hh chhchhchcphhhchhchhccphpchccchchhhcchhcppcp AA AAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAAAAAAAAAAAA VY-----DIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKT my_fasta_file ++ ++|+++ +++++++ | |++++ ++++ +++ + +++ DDVVVVLAGAANRDPRRYDRPDDFDIERDPVPSMSFGAGMRYCLGSYLAR 3BUJ_A XXBBBBBAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAA cchhhhhhphhpcchcchcchcchchccchhhphphphphchhhpphhhc 301- 350..ddddd..:.........:.........:.........:.........: 351- 397.........:.........:.........:.........:....... hhchhhhhcchhhhpc hphhhhhcchphhhhhhhhphpchphcpp AAAAAAAAAAAAAXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAKLIPLIEDVLAAGE--IQPPAPPEDAQPVAIPLPVSLGDAGHRSS my_fasta_file ++++ ++ + |+ ++ ++ ++++++ ++ ||++|+++ TQLRAAVAALARLPGLRLGCASDALAYQPRTMFRGLASLPIAFTPGG 3BUJ_A AAAAAAAAAAAXXXXXBBXXXXXXXXXXXXXXXXXXXXXBBBXXXXX pphchhhhhhhchhphchphhpchhhhphcphhcphhphhhhhphpp 351- 397.........:......dd.:.........:.........:....... The seq2struc alignment: my_fasta_file ---> 2GWN_A align_len=451 ene=-105.00 identity=2.882483 hpc_err=35.254988 size_err=0.000000 ins=0 del=146 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h ph h hhphhhhccchphh X BB X XXXXXXXXXXXBBB ----------------M--------TW-L-------PLNPIPLKDRVSMI my_fasta_file + ++ +++| ++ + + SNAMKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEV 2GWN_A XXXXBBBBBBBBBBBXXBBBBBBBBBBXXBBBBBBBXXXXXXXXXXXXBB pphhchhhcphhhppcpcphhpphhhcphhhpchhcpchhhccphphcch 1- 50dddddddddddddddd.dddddddd..d.ddddddd...:.........: 51- 100.........:.........:.........:.........:.........: hhphpphchhcphhhhhccpphcphhhhp phhhhhhc BBXXXBBBBXXXBBBBBBXXXXBBBBBXX XXBBBBBB FLQYGQIDVIDGAFVLIDKTGIRTHIPVG----------SVACIMLE--- my_fasta_file +++|+++ + +++ ++ ++ + + ++ IECSGLRLFPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMPN 2GWN_A BBXXXXBBBBXBBBBBBXXXXXXXXXXXXAAAAAAAAAAXXBBBBBBXXX hchpphchhhphhccphhhcchphphchphhpcpchhhhpphpphhchhp 51- 100.........:.........:.........dddddddddd:.......ddd 101- 150.........:.........:.........:.........:.........: hppchp hhhhchhhphpp hhh hh pchph XXXXXX AAAAAAAAAXXX BBB BB XXXXX -PGTRVS-----HAAVRLAAQVGT-LLV-WV--------------GEAGV my_fasta_file +++ ++ ++++++|+ ++ + + ++ ++ TNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDNIDEIKRVDKHLVPG 2GWN_A XXXXXXXAAAAAAAAAAAAAAXXXBBBBXBBXXXXXAAAAAXXXXXXXXX pphhpphhcchhcccphphcphhhphphhhppppcphcchcchcchhhhp 101- 150d......ddddd.......:....d...d:.dddddddddddddd....: 151- 200.........:.........:.........:.........:.........: chhh ppphpphcpcchhhphc h hhccchchchhcchhc BBBB XXXXXXXAAAAAAAAAA A AXXAAAAAAAAAAAAA RVYA-----SGQPGGARSDKLLYQAK---L----ALDEDLRLKVVRKMFE my_fasta_file ++ + + + +++ ++ | + | +++++ + ++ LKLFLGSSTGNMLVDNKETLEKIFGECDLLIATHCEKEEIIRANKEHYKA 2GWN_A BBBBXXXXXXXXXXXXAAAAAAAAAAXXXXBBBBXXXAAAAAAAAAAAAA hchhhpppppphhhcpccphcchhpchchhhhphhcccchhchpcchhch 151- 200....ddddd:.........:......ddd:dddd.....:.........: 201- 250.........:.........:.........:.........:.........: hc hpchhhhc cphcphcphcppchchphhhh hcphphphpp AA AXXXAAAA AAAAAAAAAAAAAAAAAAAAA AAAXXXXXXX LR----FGEPAPAR--RSVEQLRGIEGSRVRATYALL---AKQYGVTWNG my_fasta_file ++ +++ | + +++ |++ ++ + + +++ + ++ KYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLSTEKELS 2GWN_A AAXXXXXXXXAAAAXXAAAAAAAAAAAAAAAAAAXXXBBBXXXXXXXXXX chppchchhhhhhhcpcchhhcpphchhchhcchphchhhhhhppccchp 201- 250..dddd...:....dd...:.........:.......ddd.........: 251- 300.........:.........:.........:.........:.........: cchchcchccpc phpph hphh pphhhphpc XXXXXXXXXXXX AAAAA AAAA AAAAAAAAA RRYDPKDWEKGD------TINQC-----ISAA---------TSCLYGVTE my_fasta_file +++ +++++ + ++ + + +++ + + LFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREA 2GWN_A XXXXXXXXXXXXBBBBBBAAAAAXXXXXAAAAXXXXXXXXXXXXAAAAAA hhcpchhphpcchppchhhhhhhhpcpchpchppchchphhhcccpccch 251- 300.........:..dddddd.:...ddddd.:..ddddddddd........: 301- 350.........:.........:.........:.........:.........: hhhhhhphhhhhphhhppchhphhh chhchhchcphhhchhchh AAAAAXXXXXXBBBBBXXXXXXAAA AAAAAAXAAAAAAAAAAAA AAILAAGYAPAIGFVHTGKPLSFVY------DIADIIKFDTVVPKAFEIA my_fasta_file + + ++ +|+ +++++ |++++ + + + + ++ + | LRAAVRNGRIDIIATDHAPHLLREKEGSCLQAASGGPLVQHSLLALLELC 2GWN_A AAAAAAAXXXXBBBXXXXXXXAAAAXXXXXXXXXXXXXXXXAAAAAAAAA hchhhcppchchhhpchhhhhhccccpphhphhppphhhphphhhhhchh 301- 350.........:.........:.....dddddd........:.........: 351- 400.........:.........:.........:.........:.........: ccphpchccchchh hcchhcp pcphhch hhhh cc AXXXXXXXAAAAAA AAAAAAA AAAAAAA AAAA AA RRNPGEPDREVRLA-CRDIFRS--------SKTLAKL-----IPLI--ED my_fasta_file + +| ++ ++ +++ + ++ ++ + NQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVS 2GWN_A AXXXXXAAAAAAAAXAAAAAAAXXXXXXXXXXXXXXXBBBBBXXXXBBXX ppphhphcchhpcphhhhhphhhhcccphhchphhhchhhhchpphhphp 351- 400.........:....d....:..dddddddd.......ddddd....dd.: 401- 450.........:.........:.........:.........:.........: hhhhpchphhhhhcch ph hh hh hhhphpchphcp AAAXXXXXXXXXXXXX XX XX XX XXXXXXXXXXXX VLAAGEIQPPAPPEDA--QP-------VA-----IP--LPVSLGDAGHRS my_fasta_file ++ + ++ +| | ++ ++ ++ + + ++ ADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLFF 2GWN_A XXXXXXXXXXXXXXXXBBXXBBBBBBBXXBBBBBXXBBXXXXXXXXXXXX hcphhphhphphhcphphphphhhphhpphhhhhcpchhcpchphhhhhh 401- 450.........:......dd.:ddddddd..ddddd..dd.:.........: 451- 451. p X S my_fasta_file N 2GWN_A X p 451- 451. The seq2struc alignment: my_fasta_file ---> 2O5E_A align_len=659 ene=68.00 identity=3.338391 hpc_err=24.127465 size_err=0.000000 ins=0 del=354 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: h phhh hphhhhc cchphhhhphpphch hcphhh X BBXX XXXXXXX XXXBBBBBXXXBBBB XXXBBB M---TWLP--------LNPIPLK--DRVSMIFLQYGQIDV--IDGAFV-- my_fasta_file | + ++ ++ + + ++ + + + + +++ ++ MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQ 2O5E_A XBBBBBXXAAAAAAAAXXXXXXXBBBXXBBBBXXXBBBBBXXXXXBBBXX hchhhhcchphhchhhchhhchhccpcphhchpppphhphhhphhhcphp 1- 50.ddd....dddddddd...:...dd....:.........:dd......dd 51- 100.........:.........:.........:.........:.........: hhccpphcphhhhpp hhhhhh BBBXXXXBBBBBXXX XBBBBB ----------------LIDKTGIRTHIPVGS-------------VACIML my_fasta_file |++ ++ + + ++| PDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVH 2O5E_A XXXXXXXXXXXXXXXXXXXXXXXXBBBXXXXAAAAAAAAAAAAAXXBBBB hchhcpchhchphhchhhhhcchphphchphpcphphhcchhhchpchhh 51- 100dddddddddddddddd...:.........:.ddddddddddddd.....: 101- 150.........:.........:.........:.........:.........: chppc hphhhhchhhp hp phh hhhpch phchh BXXXX XXAAAAAAAAA XX XBB BBBXXX XXBBB EPGTR--VSHAAVRLAAQ--VG------TLL-VWVGEA-------GVRVY my_fasta_file ++ + + + ++ + +++ + ++ ++| + AGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLR 2O5E_A BXXXXAAAAAAAAAAAAAXXXXAAAAAAXBBXXXXXXXAAAAAAAXXXXB hpchcccpphhhcchhchhphhhcccpphpchhhpchphphhcchhcchc 101- 150.....dd..:........dd..dddddd.:.d......ddddddd....: 151- 200.........:.........:.........:.........:.........: hppph pphcpcchhhphchh hc c BXXXX XXXAAAAAAAAAAAA XX A ASGQP----------------GGARSDKLLYQAKLA----------LD-E my_fasta_file + +| + ++ ++ ++ SNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQT 2O5E_A BXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXAA pppchhhhhhphhhchchchhhphphpchhphhpcphphpphhphpchpp 151- 200.....dddddddddddddddd........:......dddddddddd..d: 201- 250.........:.........:.........:.........:.........: chchchhcchhchch AAAAAAAAAAAAAAA DLRLKVVRKMFELRF----------------------------------- my_fasta_file + +++||| ++| + PVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQ 2O5E_A AAAAAAAAAAAAAAAXXXXBBBBBBBBBBXXXXXBBBBBBXXXXXXXXXX hhhphhhccccchcphhhcchhchchhhhphhccchphhhphpchhchhp 201- 250.........:.....ddddddddddddddddddddddddddddddddddd 251- 300.........:.........:.........:.........:.........: pch hhh ccphcph XXX AAA AAAAAAA --------GEP-----APA------------------------RRSVEQL my_fasta_file + ++ + + ++ DEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE 2O5E_A XXXXXXXXXXXAAAAAAAAXXBBBBBBBBBBBBBBBXXXXXXXAAAAAAA cccpchhhchhhchhhpchppphhhhpphpccccpcphhhhhphphhphc 251- 300dddddddd.:.ddddd...dddddddddddddddddddddddd......: 301- 350.........:.........:.........:.........:.........: cphcp pchchphhhhhcp hphphppcchchcchccpc phpp AAAAA AAAAAAAAAAAAA XXXXXXXXXXXXXXXXXXX AAAA RGIEG---SRVRATYALLAKQ---YGVTWNGRRYDPKDWEKGD---TINQ my_fasta_file +++ + + ++ ++ + +++ +++ + ++++ + |+ AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNA 2O5E_A AAAAAXXXAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXAAAAAAA hhcchphphpphhchhpchhcphchhphhcpchchhhcchhhpchhhhph 301- 350.....ddd.:.........:.ddd.....:.........:...ddd...: 351- 400.........:.........:.........:.........:.........: hhph hpph AAAA AAAA CISA------------------------------------------ATSC my_fasta_file ++ + ISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEA 2O5E_A AAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAA hphhhhchhhphhhchchcpchhcccchchhhhhhhphcpphhphpcpch 351- 400....dddddddddddddddddddddddddddddddddddddddddd...: 401- 450.........:.........:.........:.........:.........: hhphpchhhhh AAAAAAAAAAA LYGVTEAAILA--------------------------------------- my_fasta_file + ++++|++ KVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL 2O5E_A AAAAAAAAAAAXXXXXXBBBBBBBBBBBBXXBBBBBBBBBBBBXXXXXXX chhphhhcphhhphhhchhhcchhhchchhcpchhhchchhhchphcphh 401- 450.........:.ddddddddddddddddddddddddddddddddddddddd 451- 500.........:.........:.........:.........:.........: hphhhh hphhhppchhp hhhchhch XXXXXX BBBBBXXXXXX AAAAAAAA ---------------AGYAPA--------IGFVHTGKPLS--FVYDIADI my_fasta_file + +++ ++++| +|++ + ++ ++ GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM 2O5E_A XXXXXXXXXXXXXXXXXXXXXBBBBBBBBBBBBBXXXXXXBBAAAAAAAA ppccccccpcpphhhhhhcpcchhhccpchhccppphhchhpchphhphh 451- 500ddddddddddddddd....:.dddddddd:.........:dd.......: 501- 550.........:.........:.........:.........:.........: h c hcp hhhchhchhc cp A X AAA AAAAAAAAAA XX I-------K--FDT-------------VVPKAFEIAR-------RN---- my_fasta_file + + ++ ++ TGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHS 2O5E_A AXXXXXXXXAAAAAXXXXXXXXXXXXXAAAAAAAAAAXXXBBBXXXBBBB pphhchhpccchcchhchpcphppchpchphhchhhccphhpccpchhhp 501- 550.ddddddd.dd...ddddddddddddd..:.......ddddddd..dddd 551- 600.........:.........:.........:.........:.........: h pc hc cchchhhcc hhcppcphhchhh X XX XX AAAAAAAAA AAAAAAAAAAAAA P---------GE----PD-----REVRLACRD-----IFRSSKTLAKLIP my_fasta_file + ++ ++ +|++|+++ + ++ +| + TDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY 2O5E_A XAAAAAAAAAXXAAAAXXAAAAAAAAAAAAAAXXXXXAAAAAAAAAAAAA pchpchhhhphhchhpchchphhhcphhpphpccphchpchhphhhpphh 551- 600.ddddddddd..dddd..ddddd......:..ddddd..:.........: 601- 650.........:.........:.........:.........:.........: hhcchhh hpch phhhhhcchphhhhhhhhp AAAAAAA XXXX XXXXXXXXXXXXXXXXXXX LIEDVLA------------AGEI--------QPPAPPEDAQPVAIPLPVS my_fasta_file + +|+ + | + +|+++++ + | |++ ++ QLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSG 2O5E_A AAAAAAAXXXXXXXXXXXXXXXXAAAAAAAAXXXXXXXXXXXXXXXXXXX phhcphccphhcphcphhhhppppphcccchhhcccphccphhhcchppp 601- 650.......dddddddddddd:...dddddddd........:.........: 651- 659......... hpchphcpp XXXXXXXXX LGDAGHRSS my_fasta_file ++ +|+++ AIAHHHHHH 2O5E_A XXXXXXXXX hhhhhhhhh 651- 659......... The seq2struc alignment: my_fasta_file ---> 2AEM_A align_len=305 ene=-46.00 identity=3.934426 hpc_err=38.360655 size_err=0.000000 ins=79 del=0 begin1=0 begin2=0 1- 50.ii......:.....iii.:.........:.........:i........: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file ++++ + + +++++++ + + + + ++++|+ ++ A--KSRHVVICGWSE---STLECLRELRGSEVFVLAEDEN-VRKKVLRSG 2AEM_A X XXXXBBBBXXXA AAAAAAAAXXXXXBBBBBXXXX XAAAAAXXX h cpchhhhhphpc pphchhcchcppchhhhhcccp hccchhcpp 1- 50.........:.........:.........:.........:.........: 51- 100.....i...:.iii.....:i..iiiii.:.......iii....iiiiii hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file + + | ++ | + + + + ++++| ++ + ANFVH-GDPTR---VSDLEK-AN-----VRGARAVIV---DLES------ 2AEM_A XBBBB XXXXX AAAAAA XX XXXXXBBBB XXXX hphhh pchpc hpchcc hp hcphchhhh chcp 51- 100.........:.........:.........:.........:.........: 101- 150......ii.:.........:.........:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file + + ++| + + + +++ + + ++ +| ++++ + + DSETIH--CILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVIS 2AEM_A AAAAAA AAAAAAAAXXXXXBBBBXXXXXXAAAAAAAXXXBBBXAAAAA cpcphh hhhphcchccphchhhchcchcphcphchhphcphhphhhhp 101- 150.........:.........:.........:.........:.........: 151- 200.....iiiiiiiiiiiii.:....iiiiiiiiiiiii..:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file ++ + ++ | ++ ++ | + GRLMS-------------RSIDDG-------------YEAMFVQDVLAEE 2AEM_A AAAAA XXXXXX AAAAAAAAAAXXX pchhp cphccp hchhhhpchhhcc 151- 200.........:.........:.........:.........:.........: 201- 250.........:....iiiiiii........:.........:....iiiiii hhhhphhhppchhphhhchhchhchcphhhchhchhccphpchccchchh XXXBBBBBXXXXXXAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAAA APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA my_fasta_file +++++ + +++++| + ++ | +++ ++ + ++++ STRRMVEVPIPEGS-------KLEGVSVLDADIHDVTGVIIIGV------ 2AEM_A XXXBBBBBBXXXXX XXXXXXAAAAXAAAAAXXBBBBB ppcchhchhhhcpp chcphphhchchhchpphhhhph 201- 250.........:.........:.........:.........:.........: 251- 300iiiiiiiiiiiii......:.........:.........:.........: hcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpch AAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXX CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA my_fasta_file +++++++ + +|++++ ++ ++ + | -------------GRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNY 2AEM_A BBXXBBBXXXXXXXXXXXXXBBBBBBXAAAAAAAAAA pcpcchhhchhcchphchpchhhphpchcchcchcph 251- 300.........:.........:.........:.........:.........: 301- 305..... phcpp XXXXX GHRSS my_fasta_file +++++ ISALV 2AEM_A AXXXX hphhh 301- 305..... The seq2struc alignment: my_fasta_file ---> 2AMX_A align_len=364 ene=-121.00 identity=3.571429 hpc_err=42.307693 size_err=0.000000 ins=0 del=59 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhphhhhcc chphhhhph pphchhcphhhhhccpphcp XBBXXXXXXXXXX XXBBBBBXX XBBBBXXXBBBBBBXXXXBB MTWLPLNPIPLKD----RVSMIFLQY----GQIDVIDGAFVLIDKTGIRT my_fasta_file ++ ++ +|+ + +++ ++++ + |++++++ +| +++ + GLVPRGSEIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTF 2AMX_A XXXXXXXXXXXXXAAAAXXXXXXXXXAAAAAAAAAAXXBBBXXXXXXXXX phhhcppchchhcccchpphchpphpcccchchhcchhchchhhhhchph 1- 50.........:...dddd..:......dddd.........:.........: 51- 100.........:.........:.........:.........:.........: hhhhpphhhhhhchppchphhhhchhhphpphhhhhpchphchhhppphp BBBXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXX HIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPG my_fasta_file + + +++ ++ + |+++ ++ + ++++ +| ++ ++ + SAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLAEFIRKAISVSDLY 2AMX_A XAAAAAAAAAAXXXXXXXXAAAAAAAAXXXXXXXXAAAAAAAAAAAXXXX phchhhchhcchphphphpccchhchhhhpccpcphhchhcchhphpchh 51- 100.........:.........:.........:.........:.........: 101- 150.........:.........:.........:.........:.........: phcpcchhhphchhhccchch chhcchhchchpchhhhccphcp XXAAAAAAAAAAAAXXAAAAA AAAAAAAAAAAXXXAAAAAAAAA GARSDKLLYQAKLALDEDLRL------KVVRKMFELRFGEPAPARRSVEQ my_fasta_file ++ ++++ +++ ++ + ++ + |++ + ++ ++ RDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFI 2AMX_A XXAAAAAAAAAAAAAAAAAXXBBBBBBBBXAAAAAAXXXXXAAAAAAAAA cchchhcchhchhhhcchccphhhhchchphphhppphphchchhhchhh 101- 150.........:.........:.dddddd..:.........:.........: 151- 200.........:.........:.........:.........:.........: hcphcppch chphh hhhcphphp hppcc AAAAAAAAA AAAAA AAAAAXXXX XXXXX LRGIEGSRV------------------RATYA---LLAKQYGVT-WNGRR my_fasta_file + ++ + +| + + |+ + + KGIKNATELLNNKIHVALICISDTGHAAASIKHSGDFAIKHKHDFVGFDH 2AMX_A AAAAAAAAAXXXXXBBBBBBBXXXXXXAAAAAXXXAAAAAXXXXBBBBBX cphcphpchhppchhhhhhhhpcpphhhhphchppchhhchchchhphch 151- 200.........dddddddddddddddddd..:..ddd....:....d....: 201- 250.........:.........:.........:.........:.........: hchcchccpcphpphhphh pphhhphpchhhhhhphhhh XXXXXXXXXXAAAAAAAAA AAAAAAAAAAAAAAXXXXXX YDPKDWEKGDTINQCISAA-----------TSCLYGVTEAAILAAGYAPA my_fasta_file + + +++| + +++ ++++ ++| + ++ + + GGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINILNVE 2AMX_A XXXXXXXXXXAAAAAAAAAXXXBBBBBBXXXXXXXXXAAAAAAAAXXXXX ppcchchcchcchhhphcchphhhphhhpcchphhphpphhphhphhphc 201- 250.........:.........ddddddddddd.........:.........: 251- 300.........:.........:.........:.........:.........: hphhhppchhp hhhchhchhch cphhhchhchhccphpchccchch BBBBBXXXXXX AAAAAAAAAXA AAAAAAAAAAAAXXXXXXXAAAAA IGFVHTGKPLS-FVYDIADIIKF---DTVVPKAFEIARRNPGEPDREVRL my_fasta_file +++ ++ +++| + ++ ++ + ++++ ++ ++ RIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLY 2AMX_A BBBBXXXXXXXAAAAAAAAAAXXBBBBXAAAAAAXXXXXXXXXXXAAAAA chphphchpcpcchhchhcccchhhchhhhpphhhpphcphcphhhcchh 251- 300.........:.d.......:...ddd...:.........:.........: 301- 350.........:.........:.........:.........:.........: h hcchhcppcphhchhhhhcchhhhpc hphhhhhcchphhhh A AAAAAAAAAAAAAAAAAAAAAAAXXX XXXXXXXXXXXXXXX A-------CRDIFRSSKTLAKLIPLIEDVLAAGE-IQPPAPPEDAQPVAI my_fasta_file + + |+ +++ + ++ ++++ ++ + + +|++++ DAGVKVSVNSDDPGMFLSNINDNYEKLYIHLNFTLEEFMIMNNWAFEKSF 2AMX_A AXXXBBBBXXXXAAAAXXXAAAAAAAAAAAAXXXAAAAAAAAAAAAAAXX chphchphppcchphhhpphpcphcchhhhhphphcchhhhpphhhccph 301- 350.ddddddd.:.........:.........:....d....:.........: 351- 364.........:.... hhhhphpchphcpp XXXXXXXXXXXXXX PLPVSLGDAGHRSS my_fasta_file +++++ +++ VSDDVKSELKALYF 2AMX_A XXAAAAAAAAAAAX hpcchcpchchhhh 351- 364.........:.... The seq2struc alignment: my_fasta_file ---> 1O97_C align_len=306 ene=-62.00 identity=7.189543 hpc_err=42.156863 size_err=0.000000 ins=45 del=1 begin1=0 begin2=0 1- 50...iiiiiii.........:...iiii..:iiiiii...:iii......: hphhhhphhhhccchphhhhphpphchhcphhhhhccpphcphhhhpphh XBBXXXXXXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBBBXXXXB MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA my_fasta_file | |++++ + | + + + +| + MKI-------LVAVKQTAALEED----FEI------REDG---MDVDEDF 1O97_C XBB BBBXXBBBBBXXX XXX XXXX XXXXXXX hch hhhhcpphhhccc hch cccp hchccch 1- 50.........:.........:.........:.........:.........: 51- 100.........:.........:...iiiii.:.........:....iii..: hhhhchppchphhhhchhhphpphhhhhpchphchhhppphpphcpcchh BBBBBXXXXXXAAAAAAAAAXXXBBBBBXXXXXBBBBXXXXXXXAAAAAA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL my_fasta_file +++ + +++ +++ + + ++++| |+ | ++ MMYDLNEWDDFSLEEAMKIKESS-----DTDVEVVVVSVGPDRV---DES 1O97_C BBBBBXAAAAAAAAAAAAAAAAX XXXXBBBBBBBXXXXX AAA hhhchpchcchphcchhchccpp cpchchhhhphphcch ccp 51- 100.........:.........:.........:.........:.........: 101- 150........iiiiiiiiiiiiiiii.....:.........:.........: hphchhhccchchchhcchhchchpchhhhccphcphcphcppchchphh AAAAAAXXAAAAAAAAAAAAAAAAXXXAAAAAAAAAAAAAAAAAAAAAAA YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA my_fasta_file ++||+ + +| +++ ++++ ++++++| +++ LRKCLAKG----------------ADRAVRVWDDAAEGSDAIVVGRILTE 1O97_C AAAAAAXX XXBBBBBXXXXXXXXXAAAAAAAAAA hcchhhcp hcchhchhcchhcppchhhhpchhpc 101- 150.........:.........:.........:.........:.........: 151- 200.....i...:.........:.........:.........:.........: hhhcphphphppcchchcchccpcphpphhphhpphhhphpchhhhhhph AAAAAXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAXXX LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY my_fasta_file +| + +++ + |++++ |++ | + +|+++ + + |+ VIKKE-APDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGD 1O97_C AAAAA XXXBBBBBXXXXXXXXXXAAAAAAAAAXXXBBBBBBBBBXXXXX hhccc hhchhhhphpppcphhhppphphhphhphhhhhhhhchphchpc 151- 200.........:.........:.........:.........:.........: 201- 250.........:.........:.........:.........:.........: hhhhphhhppchh phhhchhchhchcphhhchhchhccphpchccchch XXXBBBBBXXXXX XAAAAAAAAAXAAAAAAAAAAAAAXXXXXXXAAAAA APAIGFVHTGKPL-SFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRL my_fasta_file ++| +++++ + +|+++ + +++ + + | + ++ +++ ++ NKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPI 1O97_C XBBBBBBBXXXXXBBBBBBBXXXBBBBXXXXXXXXXXXXXBBBXXXXXXX pchhhccchcpphhpchchphhhhhphphphpchchhphcphcphhpchh 201- 250.........:...d.....:.........:.........:.........: 251- 300.........:.........:.........:.........:.........: hhcchhcppcphhchhhhhcchhhhpchphhhhhcchphhhhhhhhphpc AAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXX ACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGD my_fasta_file +++ + + + + + +++ + + +|+++++ ++++|+++ ++++ EEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQAAKII 1O97_C XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAXAAAA cchphhchphphpchphhpphpchcchhhhccpchphhcpphpcphhchh 251- 300.........:.........:.........:.........:.........: 301- 306...... hphcpp XXXXXX AGHRSS my_fasta_file ++ + QIINEF 1O97_C AAAAAA phhpch 301- 306...... The seq2struc alignment: my_fasta_file ---> 1Y4I_A align_len=397 ene=-95.00 identity=5.793451 hpc_err=37.027708 size_err=0.000000 ins=0 del=92 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hphhhhp hhhhccchphhhhphpphchhcphhhhhccpphcphh XBBXXXX XXXXXXXXBBBBBXXXBBBBXXXBBBBBBXXXXBBBB MTWLPLN------PIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHI my_fasta_file + ++ ++ + |++ | +++ ++ + |++ + |+ SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFAL 1Y4I_A XXXXXXXAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAX pchcphphppphhhhppphchppphhpphhhpppphhhcphcpphhchhh 1- 50.......dddddd......:.........:.........:.........: 51- 100.........:.........:.........:.........:.........: hhpphhhhhhchppchphhhhchhhphpphhhhh p ch BXXXXBBBBBBXXXXXXAAAAAAAAAXXXBBBBB X XX PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWV-G------------EA my_fasta_file ++ ++| ++| ++ ++++ +| + + ++ EESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ 1Y4I_A XXXXXXXXXXXXAAAAAAAAAAAAAAXXXBBBBBXXAAAAAAAAAAAAXX ccpphhhpchpphppchhccchhhhccpchphhphpphphhppphhphhp 51- 100.........:.........:.........:....d.dddddddddddd.: 101- 150.........:.........:.........:.........:.........: phchhhppphpphcpcchhhphchhhcc chchchhcchhchch XXBBBBXXXXXXXAAAAAAAAAAAAXXA AAAAAAAAAAAAAAA GVRVYASGQPGGARSDKLLYQAKLALDE-----DLRLKVVRKMFELRF-- my_fasta_file + |+ ++++ ++ |++++ + + | +++++ ++++ QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETK 1Y4I_A XXXBBBBBXXXXAAAAAAAAXAAAAXXXBBBBBXXXXAAAAAAAXXXXBB ppchhhphphhhphphhhhphphhchphphchhchpchcchchhhchcpc 101- 150.........:.........:........ddddd......:........dd 151- 200.........:.........:.........:.........:.........: pchhhhccphcphcphcppchchp hhhhhcphphphppcc XXXAAAAAAAAAAAAAAAAAAAAA AAAAAAAXXXXXXXXX -----GEPAPARRSVEQLRGIEGSRVRAT-----YALLAKQYGVTWNGRR my_fasta_file + +|++ +| ++ + ++++ ++ ++ +++ ++ + + VVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGA 1Y4I_A BBBBBXXXXXXXXXXXAAAAAAAAAAXXXBBBBBXXXXXXXXXXXXXXXX hhhhcphhphphphhchcphhphhhppphhhhhcpphhphhhpphhphph 151- 200ddddd....:.........:.........ddddd.....:.........: 201- 250.........:.........:.........:.........:.........: h chcchccpcphpp hhphhpphhhphpchhhhhhphhhhhp X XXXXXXXXXAAAA AAAAAAAAAAAAAAAAAAAXXXXXXBB Y-----DPKDWEKGDTINQ----CISAATSCLYGVTEAAILAAGYAPAIG my_fasta_file + ++|+ + + ++ + + + ++| +++|++++ +| ++ DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNA 1Y4I_A XBBBBBXXXXXXXXXXXXXBBBBBXAAAAAAAAAXAAAAXXXXXXXAAAA chhhhphpchhpphpchhpphhhpcpchhcphchhphcchppphhphhph 201- 250.ddddd...:.........dddd......:.........:.........: 251- 300.........:.........:.........:.........:.........: hhhppchhphhhchhchhchcphhhchhc h hccphpchccch BBBXXXXXXAAAAAAAAAXAAAAAAAAAA A AAXXXXXXXAAA FVHTGKPLSFVYDIADIIKFDTVVPKAFE---I-----ARRNPGEPDREV my_fasta_file ++ + + + ++++ | + + ++ +| +| WLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL 1Y4I_A AAAAAAAXXAAAAAAAAAAAAAAAAAAAAXXXXBBBBBXXXXXXXXXAAA hhphcphcphphchcchhcphhchhchhcphhphpchhhhphpphhphch 251- 300.........:.........:.........ddd.ddddd.:.........: 301- 350.........:.........:.........:.........:.........: chhh cchhc ppcphhchhhhhcchhh hpchphhhh hcc AAAA AAAAA AAAAAAAAAAAAAAAAA XXXXXXXXX XXX RLAC-RDIFR------SSKTLAKLIPLIEDVLA--AGEIQPPAP---PED my_fasta_file +++ + + + ++| ++ + ++| |+ ++++ ++ GQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPA 1Y4I_A AAAAXXXXXXBBBBBBXXAAAAAAAAAAXXXXXBBXXXXXXXXXBBBXXX ppcphphhpphhphchhpphchpcchhpphchhhhhhphpcpcphhphhh 301- 350....d....:dddddd...:.........:...dd....:....ddd..: 351- 397.........:.........:.........:.........:....... hphhhhhh hhphpc hphcp p XXXXXXXX XXXXXX XXXXX X AQPVAIPL------PVSLGD-----AGHRS----------------S my_fasta_file +++ + +++ | + SMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF 1Y4I_A XXXXXXXXAAAAAAXXXXXXBBBBBXXXXXAAAAAAAAAAAAAAAAX phphphhhhccchchphpcphhchphphcchcchhpchchhhcchph 351- 397........dddddd.....:ddddd....:dddddddddddddddd. The seq2struc alignment: my_fasta_file ---> 1Y2M_B align_len=691 ene=110.00 identity=2.604920 hpc_err=22.141823 size_err=0.000000 ins=0 del=386 begin1=0 begin2=0 1- 50.........:.........:.........:.........:.........: hp hhhhph hhhccchphh h hp XB BXXXXX XXXXXXXBBB B BX --MT----WLPLNP---------IPLKDRVSMI-----F---------LQ my_fasta_file + ++ |++ ++ +++ ++ + ++ ASTNLAVAGSHLPTTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSA 1Y2M_B XXXXAAAAXXXXXXAAAAAAAAAXXXXXXXBBBXXXXXXAAAAAAAAAXX hppphhhhpphhhppphpphchhcchhhhhpcpphchcphphphpchhph 1- 50dd..dddd.:....ddddddddd......:...ddddd.ddddddddd.: 51- 100.........:.........:.........:.........:.........: hpphc XXBBB YGQID--------------------------------------------- my_fasta_file + ARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSMSVYGVTTGFGGSADTRTE 1Y2M_B XXBBBXXXAAAAAAAAAAAAAAAAAAAAXXAAAAAAAAAAAAAAXXXXXX hccpchhchccpcchcpchccphchhcpphphphhphppphppphcpcpc 51- 100.....ddddddddddddddddddddddddddddddddddddddddddddd 101- 150.........:.........:.........:.........:.........: hhcphhhhhccpp hcphhhhp BXXXBBBBBBXXX XBBBBBXX ----VIDGAFVLIDKTG---------------IRTHIPVG---------- my_fasta_file + + + +++ + + + +|+ DAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNS 1Y2M_B XXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAXXXXXXXXAAAAAAAAAA chhphpchhhchphhphhhpphcphchpcphcpphhhchhcphhphchpp 101- 150dddd.....:.......ddddddddddddddd.......:dddddddddd 151- 200.........:.........:.........:.........:.........: phhh hhhchpp chp hhhhchhhp hpphhhhhpchphchh XXBB BBBBXXX XXX AAAAAAAAA XXXBBBBBXXXXXBBB ---SVAC--IMLEPGT-RVS--HAAVRLAAQ---VGTLLVWVGEAGVRVY my_fasta_file + ++++ + + + + ++ ++ + + + + LTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAI 1Y2M_B AAAXXBBXXXXXXXXXAXXXAAAAAAAAAAAXXXXXXBBBBBBXXBBBBB hpcphphhchhhhchhpphhphphphhhhhcpp