|DOCK/PIERR model (light green) superposed with crystal structure of complex 3rd6 (dark green)|
Protein-protein docking algorithm based on residue contact potential PIE and atomic potential PISA.
The server uses SCWRL4 , released by the Dunbrack Lab for side chain remodeling.
MOIL, MD package developed in our lab is used for energy minimization.
For detailed instructions on how to use the server, including common mistakes in job submission, please refer to our article on DOCK/PIERR server referenced below.
Please upload the files in PDB format: (one model if NMR structure)
Note: Please make sure that the receptor and ligand PDBs have different chain names.
Also, please make sure you are submitting two protein chains and not small molecule ligands!